Mycobacterium Senegalense Research Articles

Mycobacterium senegalense Infection in Kidney Transplant Patient with Diabetes, Memphis, Tennessee, USA.

Fewer than 30 cases of Mycobacterium senegalense infection have been reported. We report a complicated case of M. senegalense infection in Memphis, Tennessee, in the southeastern United States. The patient's comorbidities of past organ transplant and insulin-dependent diabetes required delicate consideration of those health conditions to guide treatment.

An Unusual Case of Renal Infection with Mycobacterium senegalense

Mycobacterium senegalense is a Non Tuberculous Mycobacteria (NTM) belonging to rapid growers Mycobacterium fortuitum group. Authors describe a unique case of Mycobacterium senegalense infection in a 62-year-old diabetic male with bilateral pyelonephritis and acute kidney injury, as patient had complaints of haematuria on and off for a week. Mycobacterium senegalense is difficult to diagnose as the symptoms are expansive and routine diagnostic tests have lesser sensitivity. It remains resistant to the commonly used antibiotics. The patient was under multiple antibiotic regimens for a long period of time and the isolate grown from the urine sample was identified by Matrix Assisted Laser Desorption Ionisation- Time of Flight (MALDI-TOF) as Mycobacterium senegalense. Later, the patient was started on antitubercular therapy and finally responded.

Bioprospecting of Chitinolytic Diazotroph Rhizospheric Bacterial Isolated From Mucuna bracteata as Biocontrol Against Ganoderma boninense

Ganoderma boninense is an infectious phytopathogenic fungus of basal stem rot in oil palm with the need of significant biocontrol strategy or alternative. Bioprospecting of chitinolytic diazotroph bacteria from rhizosphere of Mucuna bracteata as Legume Crop Cover (LCC) in oil palm plantations is potential to investigated. The aims of this study were to obtain total population of diazotroph bacteria and chitinolytic diazotroph bacteria, to evaluate its antagonistic properties followed by identification of the isolate based on 16S rRNA gene encoding. Diazotroph bacteria were isolated from M. bracteata rhizosphere originating from three oil palm plantations (PTPN III, PTPN IV unit Adolina Medan, and Perkebunan rakyat Simalingkar), followed with chitinolytic assay, morphological characterization, antagonistic assay against G. boninense, lytic assay of G. boninense mycelium by using crude chitinase and molecular identification of potential isolate. Total population of diazotroph bacteria in M. bracteata rhizosphere ranged between 2.80–3.83 × 106 CFU/g. Screening of chitinolytic diazotrophs using colloidal chitin medium obtained 23 bacterial isolates and 14 of them were known as antagonists to G. boninense. Five isolates with the highest anti Ganoderma were DK17 (71,15%), DK10 (69,70%), DK07 (59,63%), DK21 (53,48%), and DK19 (52,0%). The highe1st lytic activity of crude chitinase to G. boninense mycelium was produced by DK17. Molecular identification of five potential isolates revealed different identities, e.g. Enterobacter aerogenes (DK07), Mycobacterium senegalense (DK10), Bulkhoderia cepacia (DK17), Pseudomonas stutzeri (DK19), and Bulkhoderia cepacia (DK21). Based on these results, chitinolytic diazotroph bacteria isolated from M. bracteata rhizosphere were able to control G. boninense

Isolation, Screening, and Characterization of Methane-Utilizing Bacteria From the Sediment of Lowland Rice

Methane is a major greenhouse gas that contributes to climate change. Methanogen and methanotrophic group microbes play a role in methane emissions in lowland rice fields. Methane is produced by methanogenic bacteria that decompose organic matter in anaerobic conditions. These bacteria will be active if the soil is inundated for an extended period of time. Some of this methane will be oxidized by methanotrophic bacteria in the rhizosphere. The researchers aimed to isolate, screen, and characterize methane-utilizing bacteria in lowland rice sediment from several Indonesian provinces. 27 methane- utilizing bacteria were isolated from rice field sediments in Lampung, West Java, and East Nusa Tenggara Province. Six of them had the potential to reduce methane emissions by more than half. A pmoA-like gene could be found in all of the selected isolates. The bacterial isolates were identified as Mycobacterium senegalense, Bacillus marisflavi, Bacillus methylotrophicus, Flavobacterium tirrenicum, Providencia stuartii, and Rhizobium rhizoryzae after characterization and identification with the Biolog OmniLog® ID system. These were all capable of nitrogen fixation, phosphorus solubilization, and IAA production. These isolates have the potential to be used as biofertilizers and methane mitigation agents.
 Keywords: biofertilizers, greenhouse gas, lowland rice, methane-utilizing bacteria

Self-Aggregation and Denitrifying Strains Accelerate Granulation and Enhance Denitrification

A long start-up period is one of the main factors limiting the practical application of aerobic granular sludge (AGS). Bioaugmentation could be a good strategy to accelerate aerobic granulation. In this research, four denitrifying strains were isolated from mature AGS. Mycobacterium senegalense X3-1 exhibited the strongest self-aggregation ability and good denitrification ability. Ensifer adhaerens X1 showed the strongest denitrification ability but poor self-aggregation ability. Additionally, strain X3-1 demonstrated the highest extracellular polymeric substances (EPS) contents accompanied by relatively high N-acyl-homoserine lactones (AHLs) concentrations, which could illustrate its predominant aggregation ability—AHLs produced by bacteria regulate EPS secretion to accelerate cell aggregation. Strain X3-1 and X1 were chosen as inoculated bacterium to verify the effects of bioaugmentation on AGS granulation and denitrification. Granulation was achieved in the sequential batch reactors (SBRs) added strain X3-1 10 days earlier than the control group. The particle morphology and TIN removal rate of X3-1 were both superior to the latter. The introduction of strains reduced the richness and diversity of the microbial community, but the key functional bacteria, Candidatus_Competibacter, proliferates in the SBR inoculated with X3-1. Conclusively, it is suggested Mycobacterium senegalense X3-1 could be a prospective strain for enhancing AGS formation and denitrification.

Impact of methane-utilizing bacteria on rice yield, inorganic fertilizers efficiency and methane emissions

Methane (CH4) is one of the greenhouse gases that contribute to climate change. Lowland rice cultivation is one of the main sources of methane emissions, accounting for around 5 to 19% of total global CH4. One of the efforts to reduce CH4 gas emissions that is environmentally friendly is through methane-utilizing bacteria. This study aimed to determine the effect of methane-utilizing bacteria on rice yield and methane emissions. The bacterial strains used were Mycobacterium senegalense LM1, Providencia stuartii LM18, Rhizobium rhizoryzae BMU, and Bacillus methylotrophicus N2P4. The research was conducted in the experimental field of The Indonesian Center for Rice Research, Bogor, Indonesia. The experiment was carried out by using a factorial randomized block design with two factors and three replications. The first factor was the dose of NPK inorganic fertilizer (50%, 75%, 100%). The second factor was bacterial consortium formulas (without bacteria, bacterial consortium 1, bacterial consortium 2). The application of a bacterial consortium containing all strains increased the efficiency of inorganic fertilizers by 25%, increased rice production by 33.55%, and reduced CH4 emissions by 37.26%. It seems that the consortium of methane-utilizing bacteria has the prospect of biofertilizer and mitigation agents to mitigate the impact of global warming.

Infectious complications related to medical tourism

Medical tourism has been increasing dramatically globally, with people travelling from developed countries to low-income or middle-income countries, often to avoid high costs or long delays associated with seeking healthcare in their countries of origin. The current review summarizes healthcare-related infections associated with medical tourism, focusing on cosmetic surgery and organ transplantation. A systematic MEDLINE and PubMed search from January 2010 to December 2019 yielded 80 relevant articles, including 49 articles on medical tourism-related infections focusing on cosmetic surgery and organ transplantation, which were included in this reviews. The literature reveals specific types of cross-border, healthcare-related infections depending on medical intervention. Destinations include low-income countries such as countries of Asia and the Indian subcontinent, middle-income countries including Central and South America, and high-income countries such as the United States and Europe. In terms of type of infections, in 36 (68%) and 15 (28.3%) studies, wound and blood-borne infections were documented, respectively, while in 21 studies (58.3%) non-tuberculous mycobacteria were isolated, including Mycobacterium abscessus, Mycobacterium chelonae, Mycobacterium senegalense and Mycobacterium fortuitum. The choices of medical tourists could have significant consequences for them and their home countries, including infectious complications and importation of pathogens, particularly antibiotic-resistant microorganisms, with public health implications. There is a need for public health strategies in order to prevent morbidity and mortality as well as future management and education of patients engaging in medical tourism.

Mycobacterium senegalense Osteomyelitis of the Distal Tibia: A Case Report.

Mycobacterium senegalense infection is rare. We present the third documented case of M. senegalense infection and the first to involve the musculoskeletal system. A 55-year old immunocompetent male developed chronic osteomyelitis of the ankle and required antibiotic spacers, an Ilizarov external fixator and multiple antibiotic regimens to eradicate the infection.

Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish.

Two closely related isolates, 27335T and 24999, of rapidly growing, non-pigmented mycobacteria, were cultured from two clinically ill fish of the family Syngnathidae. Whole genome sequencing of the two isolates revealed low sequence homology to documented mycobacteria within public databases such as the NCBI. Evaluation of targeted housekeeping genes, including 16S rRNA, ITS, rpoB and hsp65, related the two bacteria distantly to Mycobacterium senegalense CK2 M4421 and Mycobacterium farcinogenes DSM 43637. Phenotypic, biochemical and dDNA-DNA hybridization tests demonstrated that Mycobacterium syngnathidarum is a new species distinct from other recognized rapidly growing mycobacterial species. Phenotypic, chemotaxonomic and phylogenetic data evaluation provided evidence that the two strains represent one novel species. We propose the formal recognition of Mycobacterium syngnathidarum sp. nov., with isolate 27335T as the type strain (=ATCC TSD-89T,=DSM 105112T).

Mycobacterium farcinogenes and Mycobacterium senegalense as new environmental threats

Background: Mycobacterium farcinogenes and Mycobacterium senegalense are the causes of the bovine farcy, a chronic granulomatous disease of the skin of zebu cattle. The zoonotic potential of these bacteria is unclear. The high contamination rate of these bacteria (as species of nontuberculous mycobacteria) has been reported in environmental samples. This study aimed to determine the prevalence of these bacteria in the water and soil environment in four suburbs of Tehran, Iran. Methods: A total of 4014 soil and water samples were collected from four areas of Tehran including Robat Karim, Firuzkuh, Shahr-e-Ray, and Varamin. In each city, at least one sample was collected per 1002 m. The sediment samples were cultured on the Lowenstein–Jensen medium. Twice a week was observed to study the growth of colony, morphology, and pigmentation. Colonies were studied using phenotypic tests. Molecular analysis was also carried out on colonies. Results: Among samples, the number of collected water samples was 48.48% (1946/4014), and the number of soil samples was 51.51% (2068/4014). Results of cultures from collected samples showed that 21.47% (862/4014) of them were positive. Among the studied areas, Rabat Karim has been identified as the most polluted region (169/480; 35%). The abundance of M. farcinogenes has been dominant in Ray. The least infection has been reported in Varamin. Conclusion: The results showed that the prevalence of these two strains was very high in water and soil. Due to these two strains are the main and effective factors of bovine farcy in zebu cattle (the most farmed cows in Iran), surveillance of the zoning potential of this disease is very important.

Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098.

Mycobacterium peregrinum is a nonpigmented rapid growing nontuberculosis species belonging to the Mycobacterium fortuitum group. The draft genome of M. peregrinum type I CSUR P2098 comprises 7,109,836 bp exhibiting a 66.23% G+C content, 6,894 protein-coding genes, and 100 predicted RNA genes. Its genome analysis suggests this species differs from Mycobacterium senegalense.

Rapid identification of environmental NTM species using molecular genotyping

Background and objectiveNontuberculosis mycobacteria (NTM) are free-living saprophytes that are found in water, soil, animals and dairy products. During recent years, advances in molecular biology improved the recovery and accuracy of NTM identification. In the present study, similar approaches were used to differentiate environmental NTM. For this reason, the prevalence of environmental NTM in soil and water in two densely populated areas of Tehran were investigated. Material and methodsA total of 2,540 samples were collected from soil (n=1237) and water (n=1303) resources. For the soil sample: digestion and decontamination were performed using modified Engbaeks method, and for the water sample: decontamination followed with ethylpyridinium chloride (CPC; final concentration of 0.05%) and standard protocol. The phenotypic and genotyping tests were performed on all positive cultures. For molecular tests, both 16S-23S RNA and hsp65 genes spacer PCR-RFLP were used. ResultsOf the 2,540 collected samples, 285 (12%) were positive for mycobacterium. One hundred and sixty-nine (169; 60%) belonged to a slow growing mycobacteria (SGM) and 116 (41%) were rapid growing mycobacteria (RGM). The most frequent NTM were identified as Mycobacterium farcinogenes (51/485; 10.5%) and Mycobacterium fortuitum (38/485; 7.8%). However, M. farcinogenes is found to be dominant in both studied areas, but the frequency of RGM was different. In Shahre-ray, Mycobacterium senegalense was identified as the most frequent RGM (22/65; 34%), while in Varamin, M. fortuitum (20/51; 40%) had the most frequency. ConclusionThe molecular genotyping methods facilitate the rapid identification of environmental NTM. As the higher prevalence of NTM within a region increases the risk of human infection, this study outlines the importance of further investigation.

Current Perspectives on Mycobacterium farcinogenes and Mycobacterium senegalense, the Causal Agents of Bovine Farcy.

Mycobacterium farcinogenes and M. senegalense are the causal agents of bovine farcy, a chronic, progressive disease of the skin and lymphatics of zebu cattle. The disease, which is prevalent mainly in sub-Saharan Africa, was in earlier times thought to be caused by Nocardia farcinica and can be described as one of the neglected diseases in cattle. Some aspects of the disease have been investigated during the last five decades but the major development had been in the bacteriological, chemotaxonomic, and phylogenetic aspects. Molecular analyses confirmed that M. farcinogenes and M. senegalense fall in a subclade together with M. houstonense and M. fortuitum. This subclade is closely related to the one accommodating M. peregrinum, M. porcinum, M. septicum, M. neworleansense, and M. alvei. DNA probes were designed from 16S-23S rRNA internal transcribed spacer and could be used for the rapid diagnosis of bovine farcy. An ELISA assay has been evaluated for the serodiagnosis of the disease. The zoonotic potentials of M. farcinogenes and M. senegalense are unknown; few studies reported the isolation of M. senegalense and M. farcinogenes from human clinical sources but not from environmental sources or from other domestic or wild animals.

Mycobacterium senegalense Tissue Infection in a Child After Fish Tank Exposure

The present report describes the first known case of an otherwise healthy child who developed a soft tissue infection due to Mycobacterium senegalense - a pathogen usually found in east Africa that is responsible for infecting various animals. The patient presented with nonhealing wounds after sustaining facial lacerations from the shattered glass of a fish tank. The patient responded well to scar revision and antibiotics, with no subsequent relapse.

Catheter-associated bacteremia by Mycobacterium senegalense in Korea

BackgroundRapidly growing mycobacteria is recognized as one of the causative agents of catheter-related infections, especially in immunocompromised hosts. To date, however, Mycobacterium senegalense, which was known as the principal pathogen of bovine farcy, has not been reported in human infection.Case presentationWe describe the first case of human infection by M. senegalense, which has caused catheter-related bloodstream infection in a cancer patient in Korea. The microorganism was identified by the 16S rRNA gene, rpoB, and 16S-23S rRNA gene internal transcribed spacer (ITS) sequence analyses.ConclusionOur first report of catheter-associated bacteremia caused by M. senegalense suggests the zoonotic nature of this species and indicates the expansion of mycobacterial species relating to human infection. M. senegalense should be considered as one of the causes of human infections in the clinical practice.

Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases.

A novel genus-specific PCR for mycobacteria with simple identification to the species level by restriction fragment length polymorphism (RFLP) was established using the 16S-23S ribosomal RNA gene (rDNA) spacer as a target. Panspecificity of primers was demonstrated on the genus level by testing 811 bacterial strains (122 species in 37 genera from 286 reference strains and 525 clinical isolates). All mycobacterial isolates (678 strains among 48 defined species and 5 indeterminate taxons) were amplified by the new primers. Among nonmycobacterial isolates, only Gordonia terrae was amplified. The RFLP scheme devised involves estimation of variable PCR product sizes together with HaeIII and CfoI restriction analysis. It yielded 58 HaeIII patterns, of which 49 (84%) were unique on the species level. Hence, HaeIII digestion together with CfoI results was sufficient for correct identification of 39 of 54 mycobacterial taxons and one of three or four of seven RFLP genotypes found in Mycobacterium intracellulare and Mycobacterium kansasii, respectively. Following a clearly laid out diagnostic algorithm, the remaining unidentified organisms fell into five clusters of closely related species (i.e., the Mycobacterium avium complex or Mycobacterium chelonae-Mycobacterium abscessus) that were successfully separated using additional enzymes (TaqI, MspI, DdeI, or AvaII). Thus, next to slowly growing mycobacteria, all rapidly growing species studied, including M. abscessus, M. chelonae, Mycobacterium farcinogenes, Mycobacterium fortuitum, Mycobacterium peregrinum, and Mycobacterium senegalense (with a very high 16S rDNA sequence similarity) were correctly identified. A high intraspecies sequence stability and the good discriminative power of patterns indicate that this method is very suitable for rapid and cost-effective identification of a wide variety of mycobacterial species without the need for sequencing. Phylogenetically, spacer sequence data stand in good agreement with 16S rDNA sequencing results, as was shown by including strains with unsettled taxonomy. Since this approach recognized significant subspecific genotypes while identification of a broad spectrum of mycobacteria rested on identification of one specific RFLP pattern within a species, this method can be used by both reference (or research) and routine laboratories.

Mycobacterium septicum sp. nov., a new rapidly growing species associated with catheter-related bacteraemia.

Rapidly growing mycobacteria are capable of causing several clinical diseases in both immunosuppressed and immunocompetent individuals. A previously unidentified, rapidly growing mycobacterium was determined to be the causative agent of central line sepsis in a child with underlying metastatic hepatoblastoma. Four isolates of this mycobacterium, three from blood and one from the central venous catheter tip, were studied. Phenotypic characterization, HPLC and genetic analysis revealed that while this organism most closely resembled members of the Mycobacterium fortuitum complex and Mycobacterium senegalense, it differed from all previously described species. Phenotypic tests useful in differentiating this species from similar rapidly growing mycobacteria included: growth at 42 degrees C, hydrolysis of acetamide, utilization of citrate, production of arylsulfatase (3-d), acidification of D-mannitol and i-myo-inositol, and susceptibility to erythromycin, vancomycin and tobramycin. The name Mycobacterium septicum is proposed for this new species. The type strain has been deposited in Deutsche Sammlung von Mikroorganismen und Zellkulturen as DSM 44393T and in the American Type Culture Collection as strain ATCC 700731T.

Differentiation of Mycobacterium senegalense from Related Non-chromogenic Mycobacteria Using Pyrolysis Mass Spectrometry

Twenty-six representative strains of Mycobacterium chelonae, Mycobacterium fortuitum, Mycobacterium peregrinum and Mycobacterium senegalense were compared by Curie point pyrolysis mass spectrometry. The M. chelonae and M. senegalense strains formed distinct groups. A third, relatively diffuse group, contained the M. fortuitum and M. peregrinum strains. These results, together with those from corresponding analyses, suggest that pyrolysis mass spectrometry provides a rapid and reliable way of distinguishing between members of closely related mycobacterial species which are difficult to differentiate using conventional taxonomic procedures.

Identification of mycobacteria from animals by restriction enzyme analysis and direct DNA cycle sequencing of polymerase chain reaction-amplified 16S rRNA gene sequences

Two methods, based on analysis of the polymerase chain reaction-amplified 16S rRNA gene by restriction enzyme analysis (REA) or direct cycle sequencing, were developed for rapid identification of mycobacteria isolated from animals and were compared to traditional phenotypic typing. BACTEC 7H12 cultures of the specimens were examined for "cording," and specific polymerase chain reaction amplification was performed to identify the presence of tubercle complex mycobacteria. Combined results of separate REAs with HhaI, MspI, MboI, and ThaI differentiated 12 of 15 mycobacterial species tested. HhaI, MspI, and ThaI restriction enzyme profiles differentiated Actinobacillus species from mycobacterial species. Mycobacterium bovis could not be differentiated from M. bovis BCG or Mycobacterium tuberculosis. Similarly, Mycobacterium avium and Mycobacterium paratuberculosis could not be distinguished from each other by REA but were differentiated by cycle sequencing. Compared with traditional typing, both methods allowed rapid and more accurate identification of acid-fast organisms recovered from 21 specimens of bovine and badger origin. Two groups of isolates were not typed definitively by either molecular method. One group of four isolates may constitute a new species phylogenetically very closely related to Mycobacterium simiae. The remaining unidentified isolates (three badger and one bovine) had identical restriction enzyme profiles and shared 100% nucleotide identify over the sequenced signature region. This nucleotide sequence most closely resembled the data base sequence of Mycobacterium senegalense.

Structures of the glycopeptidolipid antigens of two animal pathogens: Mycobacterium senegalense and Mycobacterium porcinum.

The structures of the major glycolipid antigens of two animal pathogens Mycobacterium senegalense and Mycobacterium porcinum were elucidated by a combination of fast-atom bombardment mass spectrometry, nuclear magnetic resonance spectroscopy, chemical analyses and radiolabeling experiments. Five glycoconjugates belonging to the class of C-mycoside glycopeptidolipids were characterized in each species. They shared with those recently described in M. peregrinum the same unusual distribution of the disaccharides on the alaninol end of the molecules. Both species showed the presence of the novel sulfated glycopeptidolipid. In addition, some acetylated forms of the glycolipids were also present in the species examined. Identical seroreactivities were observed between the glycolipid antigens extracted from M. senegalense, M. porcinum and M. peregrinum and an antiserum raised against the whole lipid antigens of M. peregrinum. These data reinforce the close taxonomic relationships between the three mycobacterial species and demonstrate the antigenicity of the new variants of mycobacterial glycopeptidolipids.