Duchenne Muscular Dystrophy (DMD) is one of the most common and severe inherited neuromuscular disease caused by the loss-of-function mutations in Dystrophin gene on X chromosome. Currently, no effective treatment available for DMD, including gene augmentation therapy, since large size of the Dystrophin gene hamper the delivery by viral vectors. Exon skipping to modulate mRNA splicing patterns using antisense oligonucleotide is a promising approach currently investigated in clinical trials, however, the effect of antisense oligos is transient.Recent progress on targeted gene editing by engineered nucleases, such as TALENs or CRISPR/Cas9, have evolutionally broaden our ability to precisely modify the genomic sequence at desired locus, including genetic correction of Dystrophin gene. At the same time, however, undesired mutagenesis at the off-target loci with a few base-pair mismatches is a big concern.To this end, we previously developed a method to identify “unique sequence” in the human genome by using a database of short and unique k-mer sequences [Li HL et al., Stem Cell Reports, 4(1):143-54, 2015]. Our “uniqueness” data is useful to design a target site for engineered nucleases with high sequence specificity and minimum number of putative off-target sites, and the data is publically available at https://apps.cira.kyoto-u.ac.jp/igeats/.Moreover, to precisely control the genomic cleavage activity of CRISPR-Cas9, we constructed doxycycline inducible expression vector and Cas9 protein fused a nuclear receptor to mediate nuclear shuttling upon addition of receptor substrate. We show that both transcriptional and posttranscriptional regulations of CRISPR-Cas9 protein are effective to modulate DNA cleavage activity.To test the effectiveness of CRISPR system to correct disease mutation, we took advantages of patient-derived induced pluripotent stem cells (iPSCs) as a platform for testing various gene correction approaches. As a disease modeling for DMD gene thrapy, we derived integration-free iPS cell lines from a DMD patient who lacks the exon 44 in the Dystrophin gene, which is one of the most comon deletions of single exon. We will evaluate the dual-controlable Cas9 approache in patient-derived iPSCs, since gene-corrected iPSCs hold a promise to serve as a cell source for future DMD therapy.