Museum Specimens Research Articles

Historical DNA from a rediscovered nineteenth-century paratype reveals genetic continuity of a Bahamian hutia (Geocapromys ingrahami) population.

Past and ongoing human activities have shaped the geographical ranges and diversity of species. New genomic techniques applied to degraded samples, such as those from natural history collections, can uncover the complex evolutionary consequences of human pressures and generate baselines for interpreting magnitudes of species loss or persistence relevant to conservation. Here we integrate mitogenomic data with historical records from a recently rediscovered Bahamian hutia (Geocapromys ingrahami; (FMP Z02816)) specimen at the Fairbanks Museum & Planetarium (Vermont, USA) to determine when and where the specimen was collected and to place it in a phylogenetic context with specimens that both predate (palaeontological) and postdate (archaeological) human arrival in The Bahamas. We determined that this specimen was part of the same population as the named holotype specimen in 1891 on East Plana Cay (EPC). Bahamian hutia populations were widely extirpated following European colonization. Today, EPC hosts the last remaining natural Bahamian hutia population. Mitogenomic data places the focal specimen within the southern Bahamian hutia population, which is now largely restricted to EPC. The results reveal previously undocumented genetic continuity among the EPC population for at least the past 500 years, highlighting how 'dark' museum specimens inform new conservation-relevant understandings of diversity.

Novel Osteo Refurbishment Method and Choice of Colouring Materials for Anatomy Specimens.

The introduction of competency-based medical education curriculum and a shifted focus towards self-directed learning (SDL) in medical schools across the world has necessitated a reduction of didactic teaching hours. Museum specimens are an indispensable tool in anatomy teaching and can play a pivotal role in fostering and reinforcing SDL. Coloring of specimens makes it attractive and facilitates understanding anatomy. The aims of this study were: (1) weigh up the two commonly used coloring materials in anatomy viz. acrylic paint and nail polish; and (2) to assess the perception of anatomy students towards a Novel Osteo Refurbishment Method (NORM) for restoration of partially damaged osteology specimens. Undergraduate and postgraduate students of anatomy were recruited in the study. Participants responded to a 5-point Likert scale questionnaire. Obtained data were analyzed using Microsoft Excel version 2019. For a comparison of the two coloring agents Mann-Whitney U test was applied to the responses toward the Likert scale-based questionnaire. P-value <0.05 was considered significant. Out of 318 study participants, 63.7% and 36.3% of the respondents were male and female, respectively. 90.5 % were new entrants to university and the remainder 9.5% had a prior university degree. Students found the acrylic paint to be a better coloring agent and they also opined that NORM generated refurbished osteology specimens could serve as a useful self-learning tool. Acrylic paint was found to be more suitable as compared to nail polish with significant p-value in most of the parameters tested. Acrylic colour holds a good place in coloring both specimens and models in anatomy. Nail polish can be an alternative but with some noted disadvantages. The initial experience with NORM yielded encouraging results with potential practical utility.

"Type D" killer whale genomes reveal long-term small population size and low genetic diversity.

Genome sequences can reveal the extent of inbreeding in small populations. Here, we present the first genomic characterization of type D killer whales, a distinctive eco/morphotype with a circumpolar, subantarctic distribution. Effective population size is the lowest estimated from any killer whale genome and indicates a severe population bottleneck. Consequently, type D genomes show among the highest level of inbreeding reported for any mammalian species (FROH ≥ 0.65). Detected recombination cross-over events of different haplotypes are up to an order of magnitude rarer than in other killer whale genomes studied to date. Comparison of genomic data from a museum specimen of a type D killer whale that stranded in New Zealand in 1955, with 3 modern genomes from the Cape Horn area, reveals high covariance and identity-by-state of alleles, suggesting these genomic characteristics and demographic history are shared among geographically dispersed social groups within this morphotype. Limitations to the insights gained in this study stem from the nonindependence of the 3 closely related modern genomes, the recent coalescence time of most variation within the genomes, and the nonequilibrium population history which violates the assumptions of many model-based methods. Long-range linkage disequilibrium and extensive runs of homozygosity found in type D genomes provide the potential basis for both the distinctive morphology, and the coupling of genetic barriers to gene flow with other killer whale populations.

A new, rare, small-ranged, and endangered mountain snake of the genus Elaphe from the Southern Levant

The genus Elaphe Fitzinger, 1833 includes 17 species of charismatic, large-sized, non-venomous, Eurasian snakes. In the Western Palearctic, the genus is represented by three species from the Elaphe quatuorlineata group ranging from the Apennine peninsula to Central Asia. The southernmost population of this group is distributed in the mountains of the Southern Levant, with more than 400 km gap to other Elaphe populations. This population has been known to science for only 50 years and is virtually unstudied due to its extreme rarity. We studied these snakes’ morphological and genetic variation from the three countries where they are known to occur, i.e., Israel (Hermon, the Israeli-controlled Golan Heights), Lebanon, and Syria. We used nine mitochondrial and nuclear genes, complete mitogenome sequences, and a comprehensive morphological examination including published data, our own field observations, and museum specimens, to study its relationship to other species in the group. The three currently recognized species of the group (E. quatuorlineata, E. sauromates, E. urartica), and the Levant population, form four deeply divergent, strongly supported clades. Three of these clades correspond to the abovementioned species while the Southern Levant clade, which is genetically and morphologically distinct from all named congeners, is described here as a new species, Elaphe druzei sp. nov. The basal divergence of this group is estimated to be the Late Miocene with subsequent radiation from 5.1 to 3.9 Mya. The revealed biogeography of the E. quatuorlineata group supports the importance of the Levant as a major center of endemism and diversity of biota in Eurasia. The new species is large-sized and is one of the rarest snakes in the Western Palearctic. Because of its small mountain distribution range, in an area affected by land use and climate change, the new Elaphe urgently needs strict protection. Despite political issues, we hope this will be based on the cooperation of all countries where the new species occurs.

Predicting daily activity time through ecological niche modelling and microclimatic data.

Climate temporality is a phenomenon that affects species activity and distribution patterns across spatial and temporal scales. Despite the global availability of microclimatic data, their use to predict activity patterns and distributions remains scarce, particularly at fine temporal scales (e.g. < month). Predicting activity patterns based on climatic data may allow us to foresee some of the consequences of climate change, particularly for ectothermic vertebrates. The Gila monster exhibits marked daily and seasonal activity patterns linked to physiology and reproduction. Here we evaluate whether ecological niche models fitted using microclimate data can predict temporal activity patterns using the Gila monster Heloderma suspectum as a study system. Furthermore, we identified whether the activity patterns are related to physiological constraints. We used dated occurrences from museum specimens and human observations to generate and test ecological niche models using minimum volume ellipsoids. We generated hourly microclimatic data for each occurrence site for 10 years using the NicheMapR package. For ecological niche modelling, we compared the traditional seasonal approach versus a daily activity pattern strategy for model construction. We tested both using the omission rate of independent observations (citizen science data). Finally, we tested whether unimodal and bimodal activity patterns for each season could be recreated through ecological niche modelling and whether these patterns followed known physiological constraints. The unimodal and bimodal activity patterns previously reported directly from tracking individuals across the year were recovered using niche modelling and microclimate across the species' geographical range. We found that upper thermal tolerances can explain the daily activity patterns of this species. We conclude that ecological niche models trained with microclimatic data can be used to predict activity patterns at high temporal resolutions, particularly on ectotherm species of arid zones coping with rapid climate modifications. Furthermore, the use of high temporal resolution variables can lead to a better niche delimitation, enhancing the results of any research objective that uses correlative models.

Evolutionary history and patterns of divergence in three tropical east Asian squirrels across the Isthmus of Kra

AbstractAimUnderstanding the biotic and abiotic mechanisms underlying the generation and maintenance of biogeographic transitions represent long‐standing topics in evolutionary biology. The Isthmus of Kra (IOK) divides Sundaland and Indochina and constitutes a poorly characterized terrestrial biogeographic transition. Here we looked at population genetic structure of three species that are distributed across the IOK to gain insights into the drivers that have shaped this transition and regional diversification patterns.LocationTropical east Asia: Sundaland and Indochina.TaxaCallosciurus caniceps, Tamiops mcclellandii, and Dremomys rufigenis‐ornatus species complex (Mammalia: Rodentia: Sciuridae).MethodsWe generated complete mitogenomes and sequences of 11 nuclear intron fragments from 61 and 67 museum specimen samples, respectively. We assessed population structure by constructing Maximum Likelihood mitogenome phylogenies (IQTREE2), and nuclear marker haplowebs and conspecificity matrices (HaplowebMaker and CoMa). We estimated divergence dates through Bayesian phylogenetic inference (BEAST2) and put these results in the context of climatic and geological history.ResultsHigh levels of mitochondrial and nuclear divergence were identified across the IOK in all three squirrels. Lineage turnover was consistent with the two major mammal species distribution transitions near the Kangar‐Pattani Line and at the juncture between the Thai‐Malay peninsula and the mainland. Divergence of mitochondrial lineages across Kra was estimated in the late Pliocene/ early Pleistocene for all three taxa. Older Miocene/Pliocene divergences were estimated within Indochina in D. rufigenis‐ornatus and T. mcclellandii, which were paraphyletic.Main ConclusionsSundaic and Indochinese populations have possibly diverged in allopatric habitat refugia in or around mountains during periods of increased aridity and evergreen forest contraction. Ecological differences and/or topography might have influenced genetic differentiation during periods of rainforest expansion. Alternative hypotheses remain to be tested with more informative nuclear markers and additional geographic sampling.

Going, Going, Gone The Diminishing Capacity of Museum Specimen Collections to Address Global Change Research: A Case Study on Urban Reptiles

It has been increasingly popular to use natural history specimens to examine environmental changes. As the current functionality of museum specimens has extended beyond their traditional taxonomic role, there has been a renewed focus on the completeness of biological collections to provide data for current and future research. We used the collections of the Western Australian Museum to answer questions about the change in occurrence of five common reptile species due to the rapid urbanization of Perth. We recorded a significant decline in collection effort from the year 2000 onwards (F = 7.65, p < 0.01) compared to the period 1990-1999. Spatial analysis revealed that only 0.5% of our study region was well sampled, 8.5% were moderately sampled and the majority of the regions (91%) were poorly sampled. By analysing the trend of specimen acquisition from 1950 to 2010, we discovered a significant inconsistency in specimen sampling effort for 13 common reptile species across time and space. A large proportion of past specimens lacked information including the place and time of collection. An increase in investment to museums and an increase in geographically and temporally systematic collecting is advocated to ensure that collections can answer questions about environmental change.

Brain malformations in diprosopia observed in clinical cases, museum specimens and artistic representations

BackgroundDiprosopus is a rare malformation of still unclear aetiology. It describes a laterally double faced monocephalic and single-trunk individual and has to be distinguished from the variant Janus type diprosopus.ResultsWe examined seven double-faced foetuses, five showing true diprosopus, and one each presenting as monocephalic Janiceps and parasitic conjoined twins. Four of the foetuses presented with (cranio)rachischisis, and two had secondary hydrocephaly. Three foetuses showed cerebral duplication with concordant holoprosencephaly, Dandy-Walker cyst and/or intracranial anterior encephalocele. In the Janiceps twins, cerebral duplication was accompanied by cerebral di-symmetry. In the parasitic twins the cyclopic facial aspects were suggestive of concordant holoprosencephaly. In one of the true diprosopus cases, pregnancy was achieved after intracytoplasmic sperm injection. Whole-exome sequencing, perfomed in one case, did not reveal any possible causative variants.The comparison of our double-faced foetuses to corresponding artistic representations from the Tlatilco culture allowed retrospective assignment of hairstyles to brain malformations.ConclusionBrain malformations in patients with diprosopus may not be regarded as an independent event but rather as a sequel closely related to the duplication of the notochord and neural plate and as a consequence of the cerebral and associated craniospinal structural instabilities.

The effects of ecology and behavior on the evolution of coloration in Coraciiformes

Abstract What drives the evolution of plumage color in birds? Bird color is likely to be under both natural and sexual selection where natural selection may favor evolution toward crypsis or camouflage whereas sexual selection may favor evolution toward conspicuousness. The responses to selection are predicted to relate to species’ ecology, behavior, and life history. Key hypotheses have focused on habitat and light environment, breeding strategy, territoriality, and hunting behavior. We tested these potential causes of color variation in the Coraciiformes, a colorful clade of non-passerine birds, using phylogenetic comparative methods and data on chromatic and achromatic properties of plumage coloration measured from museum specimens. We found that correlates of color evolution in Coraciiformes vary across body regions and depend on the focal color property (chromatic or achromatic properties of plumage coloration). While the light environment showed widespread effects on coloration in multiple body regions for both color properties, selection pressures related to behavioral characteristics had more spatially localized effects (e.g. territoriality on achromatic properties of wing feathers and hunting strategy on chromatic properties of belly feathers). Our results reveal both general patterns that may hold across other bird clades and more nuanced effects of selection that are likely to be mediated through the visual ecology of the signaler and receiver and the behavioral characteristics of Coraciiform species.

Island volcanism predicts pheomelanin‐based plumage colouration in a cosmopolitan raptor

AbstractAimPheomelanin is a pigment responsible for yellowish‐to‐reddish colours of vertebrate teguments. Its biosynthesis is favoured under high concentration of intracellular thiols, which, in turn, can depend on the environmental exposure to sulphur. Thus, pheomelanin production should be more intense and frequent in environments characterized by high level of sulphur, such as volcanic regions. In this study, we aimed at addressing this hypothesis by investigating variation in plumage colour of insular populations of the cosmopolitan barn owl (Tyto alba species complex) according to the presence of soils of volcanic origin (i.e. andosols) and recent volcanic activity.LocationWorld.TaxonBarn owl species complex.MethodsWe measured plumage colouration of more than 2000 museum specimens from 50 islands and archipelagos worldwide. We then compared plumage colouration between populations living on volcanic (i.e. where andosols and/or recent volcanic activity are present) and non‐volcanic islands/archipelagos.ResultsConsistently with the prediction, plumage colouration is significantly darker (i.e. pheomelanic) on islands/archipelagos where andosols and/or recent volcanic activity are present than absent, although this environmental factor explains a small fraction of plumage colour variability across islands (&lt;10%). Similar results were obtained when specimens' sex and climatic predictors were included in the analyses.Main ConclusionsBecause excessive intracellular levels of thiols can be toxic, pheomelanin synthesis may function as a mechanism keeping these compounds below the toxicity threshold and limiting their detrimental effects on physiology. Darker plumage may also be favoured because it promotes background matching against the dark environment typical of volcanic islands (dense vegetation cover and/or dark soil). Our results add to the little evidence that the environmental exposure of compounds that are involved in melanin biosynthesis can affect animal pigmentation and suggest that soil composition may be a factor that affects melanogenesis, possibly contributing to generate spatial variation in pheomelanin‐based traits in animals.

Biometric data for ten species from the families Malaconotidea, Platysteridae and Laniidae based on museum specimens and ringing data

Biometric data for ten species from the families Malaconotidea, Platysteridae and Laniidae based on museum specimens and ringing data

Identifying the Most Probable Mammal Reservoir Hosts for Monkeypox Virus Based on Ecological Niche Comparisons.

Previous human cases or epidemics have suggested that Monkeypox virus (MPXV) can be transmitted through contact with animals of African rainforests. Although MPXV has been identified in many mammal species, most are likely secondary hosts, and the reservoir host has yet to be discovered. In this study, we provide the full list of African mammal genera (and species) in which MPXV was previously detected, and predict the geographic distributions of all species of these genera based on museum specimens and an ecological niche modelling (ENM) method. Then, we reconstruct the ecological niche of MPXV using georeferenced data on animal MPXV sequences and human index cases, and conduct overlap analyses with the ecological niches inferred for 99 mammal species, in order to identify the most probable animal reservoir. Our results show that the MPXV niche covers three African rainforests: the Congo Basin, and Upper and Lower Guinean forests. The four mammal species showing the best niche overlap with MPXV are all arboreal rodents, including three squirrels: Funisciurus anerythrus, Funisciurus pyrropus, Heliosciurus rufobrachium, and Graphiurus lorraineus. We conclude that the most probable MPXV reservoir is F. anerythrus based on two niche overlap metrics, the areas of higher probabilities of occurrence, and available data on MPXV detection.

Is it inappropriate to ask for your age? Evaluating parameter impact on tree dating in a challenging clade (Macroscelidea)

Sengis (order Macroscelidea) are small mammals endemic to Africa. The taxonomy and phylogeny of sengis has been difficult to resolve due to a lack of clear morphological apomorphies. Molecular phylogenies have already significantly revised sengi systematics, but until now no molecular phylogeny has included all 20 extant species. In addition, the age of origin of the sengi crown clade and the divergence age of its two extant families remain unclear. Two recently published studies based on different datasets and age-calibration parameters (DNA type, outgroup selection, fossil calibration points) proposed highly different divergent age estimates and evolutionary scenarios. We obtained nuclear and mitochondrial DNA from mainly museum specimens using target enrichment of single-stranded DNA libraries to generate the first phylogeny of all extant macroscelidean species. We then explored the effects of different parameters (type of DNA, ratio of ingroup to outgroup sampling, number and type of fossil calibration points) and their resulting impacts on age estimates for the origin and initial diversification of Macroscelidea. We show that, even after correcting for substitution saturation, both using mitochondrial DNA in conjunction with nuclear DNA or alone results in much older ages and different branch lengths than when using nuclear DNA alone. We further show that the former effect can be attributed to insufficient amounts of nuclear data. If multiple calibration points are included, the age of the sengi crown group fossil prior has minimal impact on the estimated time frame of sengi evolution. In contrast, the inclusion or exclusion of outgroup fossil priors has a major effect on the resulting node ages. We also find that a reduced sampling of ingroup species does not significantly affect overall age estimates and that terminal specific substitution rates can serve as a means to evaluate the biological likeliness of the produced temporal estimates. Our study demonstrates how commonly varied parameters in temporal calibration of phylogenies affect age estimates. Dated phylogenies should therefore always be seen in the context of the dataset which was used to produce them.

Nurturing Italian Geo-palaeontological Heritage with Virtual Palaeontology: Preliminary Report of Its Application in Two Natural History Museums

In this manuscript, we present a preliminary report on the use of virtual palaeontology methodologies in two natural history museums in central Italy, the Geology and Paleontology Museum of Florence and the Civic Museum of Natural Sciences of Faenza. Despite the differences between the museums (in terms of history, type and size of the collections, etc.), the use of surface and computed tomography (CT) scans has allowed the acquisition of a consistent amount of data to create digital copies of selected specimens and to plan several future projects sparked from the use of these methodologies. Our first step focused on the selection of the scanning sample: type and historically relevant specimen in the case of the Florence museum, and fragile and relevant specimens for the Faenza museum from a local yet internationally known site, Cava Monticino, dated to the Late Miocene. The scanning techniques included the use of three high-resolution scanners, with different specifications, to acquire surface data and a medical scanner to obtain CT scans. The outputs of the surface scans were excellent digital copies of the specimens, whereas tomography allowed the first investigations and visualisations of the presence of embedded bones in the fossiliferous blocks of Cava Monticino. The resulting 3D and raw data represent invaluable resources that the two museums are currently planning to implement in their exhibitions using digital visualisation devices and techniques (e.g. AR web apps, touchscreens) or 3D-printed touchable specimens.

Molecular Phylogenetic Relationships and Unveiling Novel Genetic Diversity among Slow and Pygmy Lorises, including Resurrection of Xanthonycticebus intermedius.

Genetic analysis of historical museum collections presents an opportunity to clarify the evolutionary history of understudied primate groups, improve taxonomic inferences, and inform conservation efforts. Among the most understudied primate groups, slow and pygmy lorises (genera Nycticebus and Xanthonycticebus) are nocturnal strepsirrhines found in South and Southeast Asia. Previous molecular studies have supported five species, but studies using morphological data suggest the existence of at least nine species. We sequenced four mitochondrial loci, CO1, cytb, d-loop, and ND4, for a total of 3324 aligned characters per sample from 41 historical museum specimens for the most comprehensive geographic coverage to date for these genera. We then combined these sequences with a larger dataset composed of samples collected in Vietnam as well as previously published sequences (total sample size N = 62). We inferred phylogenetic relationships using Bayesian inference and maximum likelihood methods based on data from each locus and on concatenated sequences. We also inferred divergence dates for the most recent common ancestors of major lineages using a BEAST analysis. Consistent with previous studies, we found support for Xanthonycticebus pygmaeus as a basal taxon to the others in the group. We also confirmed the separation between lineages of X. pygmaeus from northern Vietnam/Laos/China and southern Vietnam/Cambodia and included a taxonomic revision recognizing a second taxon of pygmy loris, X. intermedius. Our results found support for multiple reciprocally monophyletic taxa within Borneo and possibly Java. The study will help inform conservation management of these trade-targeted animals as part of a genetic reference database for determining the taxonomic unit and provenance of slow and pygmy lorises confiscated from illegal wildlife trade activities.

Temporal stability of the hybrid zone between Calocitta magpie-jays revealed through comparison of museum specimens and iNaturalist photos.

Hybrid zones are natural experiments for the study of avian evolution. Hybrid zones can be dynamic, moving as species adjust to new climates and habitats, with unknown implications for species and speciation. There are relatively few studies that have comparable modern and historic sampling to assess change in hybrid zone location and width over time, and those studies have generally found mixed results, with many hybrid zones showing change over time, but others showing stability. The white-throated magpie-jay (Calocitta formosa) and black-throated magpie-jay (Calocitta colliei) occur along the western coast of Mexico and Central America. The two species differ markedly in throat color and tail length, and prior observation suggests a narrow hybrid zone in southern Jalisco where individuals have mixed throat color. This study aims to assess the existence and temporal stability of this putative hybrid zone by comparing throat color between georeferenced historical museum specimens and modern photos from iNaturalist with precise locality information. Our results confirm the existence of a narrow hybrid zone in Jalisco, with modern throat scores gradually increasing from the parental ends of the cline toward the cline center in a sigmoidal curve characteristic of hybrid zones. Our temporal comparison suggests that the hybrid zone has not shifted its position between historical (pre-1973) and modern (post-2005) time periods-a surprising result given the grand scale of habitat change to the western Mexican lowlands during this time. An anomalous pocket of white-throated individuals in the northern range of the black-throated magpie-jay hints at the possibility of prehistorical long-distance introduction. Future genomic data will help disentangle the evolutionary history of these lineages and better characterize how secondary contact is affecting both the DNA and the phenotype of these species.

Feeding morphology and body size shape resource partitioning in an eared seal community.

Body size and feeding morphology influence how animals partition themselves within communities. We tested the relationships among sex, body size, skull morphology and foraging in sympatric otariids (eared seals) from the eastern North Pacific Ocean, the most diverse otariid community in the world. We recorded skull measurements and stable carbon (δ13C) and nitrogen (δ15N) isotope values (proxies for foraging) from museum specimens in four sympatric species: California sea lions (Zalophus californianus), Steller sea lions (Eumetopias jubatus), northern fur seals (Callorhinus ursinus) and Guadalupe fur seals (Arctocephalus townsendi). Species and sexes had statistical differences in size, skull morphology and foraging significantly affecting the δ13C values. Sea lions had higher δ13C values than fur seals, and males of all species had higher values than females. The δ15N values were correlated with species and feeding morphology; individuals with stronger bite forces had higher δ15N values. We also found a significant community-wide correlation between skull length (indicator of body length), and foraging, with larger individuals having nearshore habitat preferences, and consuming higher trophic level prey than smaller individuals. Still, there was no consistent association between these traits at the intraspecific level, indicating that other factors might account for foraging variability.

Rediscovery of the presumably extinct fairy lantern Thismia kobensis (Thismiaceae) in Hyogo Prefecture, Japan, with discussions on its taxonomy, evolutionary history, and conservation

Thismia (commonly known as fairy lanterns) is a genus of strange-looking, elusive, and non-photosynthetic plants. Thismia kobensis was first discovered in Kobe City, Hyogo Prefecture, Japan in 1992, but it was believed to be extinct, given that its type locality was destroyed during the construction of an industrial complex. Here, we have reported the rediscovery of T. kobensis in Sanda City, Hyogo Prefecture, which is located approximately 30 km from the type locality. The new locality of T. kobensis is the northernmost distributional limit of Asian Thismiaceae species. As the original description of the species was based on a single museum specimen that lacked two of the three inner perianth lobes, we have provided an amended description of T. kobensis, highlighting its differences from the morphologically similar species T. huangii. Specifically, our morphological re-examination has revealed that T. kobensis is distinguishable from T. huangii by its short but expanded annulus and many short hairs on each stigma lobe. We have also demonstrated that the genetic distance between these taxa is comparable to that between other closely related species pairs. Finally, we have provided brief notes on the taxonomy, biogeography, evolutionary history, and conservation of T. kobensis and its closely related species, including an enigmatic species T. americana.

Historical and citizen-reported data show shifts in bumblebee phenology over the last century in Sweden

Bumblebees are a key taxon contributing to the provision of crop pollination and ecosystem functioning. However, land use and climate change are two of the main factors causing bee decline across the world. In this study, we investigated how the flight period of bumblebee spring queens has shifted over the last century in Sweden, and to what extent such shifts depended on climate change, landscape context, latitude, and the phenology of bumblebee species. We studied ten species of bumblebees and used observations from museum specimens covering 117 years from the southernmost region in Sweden (Scania), combined with citizen-reported observations during the past 20 years across Sweden. We found that the flight period of bumblebees has advanced by 5 days on average during the last 20 years across Sweden. In the agriculture-dominated region of Scania, we found that in the late 2010s bumblebee spring queen activity in simplified landscapes had advanced by on average 14 days, compared to 100 years ago. In addition, in simplified landscapes the flight period of early species was significantly earlier compared to in complex landscapes. Our results provide knowledge on the intraspecific variation of phenological traits, indicating that early species (often common species) exhibit a higher plastic response to the environment, which may facilitate adaptation to both climate and landscape changes, compared to the late species of which many are declining.

HOMECOMING OR NEW PAD: HISTORICAL EVIDENCE FOR CALIFORNIA RED-LEGGED FROGS AND OTHER AMPHIBIANS IN THE YOSEMITE REGION, CALIFORNIA

Establishing historical species distributions can assist conservation translocations for threatened species, and yet, ecological changes necessitate developing restoration targets that are not analogous to historical baselines. Despite its recent conservation translocation to Yosemite Valley in Yosemite National Park, Sierra Nevada Mountains, USA, the historical distribution of the federally threatened California Red-legged Frog (Rana draytonii) in the valley remains unclear. Using archival records, interviews, and museum specimens, we examined the historical evidence for California Red-legged Frogs and sympatric amphibian species in the Yosemite region. We found a paucity of reliable amphibian records for Yosemite Valley since the 19th century, one of the most-visited sites in the US National Park System, and conclude that this is the result of historically low collecting and survey effort prior to the introduction of invasive American Bullfrogs (Lithobates catesbeianus; also Rana catesbeiana after Yuan and others 2016) in concert with a bird and mammal study bias from largely diurnal collecting that occurred when California Red-legged Frogs were extant regionally. We found previously undocumented records for individuals of the genus Rana for Yosemite Valley, consistent with a dominant historical hydrology more compatible for Foothill Yellow-legged Frogs (Rana boylii), though none could be definitively identified as California Red-legged Frogs. We conclude that extensive anthropogenic impacts, including acute ecosystem alteration and American Bullfrog introduction, contributed to the failure to detect California Red-legged Frogs in many places regionally once amphibians became a research priority in the latter 20th century. The conservation translocation of California Red-legged Frogs to Yosemite Valley illustrates the integration of historical baselines with contemporary realities, allowing for the complexities of change over time rather than focusing on restoration to an imagined, ideal environment in the past.