Mus Musculus Populations Research Articles

Breeding by Barn Owls Tyto alba in artificial nest hollows established for an endangered black cockatoo in the northern wheatbelt of Western Australia

ABSTRACT Barn Owls Tyto alba were recorded breeding in natural nest hollows in a Wandoo Eucalyptus wandoo woodland in the northern wheatbelt of Western Australia infrequently and at low densities during the period 1969-2022. During a record cropping season in 2022, Barn Owls were first recorded nesting successfully in natural hollows and in artificial nest hollows designed for use by Carnaby’s Cockatoos. The large clutch sizes (5-7) and complete fledging success observed in three artificial nest hollows was likely facilitated by a large House Mouse Mus musculus population associated with the record cropping season experienced at the study site.

Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis.

For more than 100 years, house mice (Mus musculus) have been used as a key animal model in biomedical research. House mice are genetically diverse, yet their genetic background at the global level has not been fully understood. Previous studies have suggested that they originated in South Asia and diverged into three major subspecies, almost simultaneously, approximately 110,000–500,000 years ago; however, they have spread across the world with the migration of modern humans in prehistoric and historic times (∼10,000 years ago to the present day) and have undergone secondary contact, which has complicated the genetic landscape of wild house mice. In this study, we sequenced the whole-genome sequences of 98 wild house mice collected from Eurasia, particularly East Asia, Southeast Asia, and South Asia. Although wild house mice were found to consist of three major genetic groups corresponding to the three major subspecies, individuals representing admixtures between subspecies were more prevalent in East Asia than has been previously recognized. Furthermore, several samples exhibited an incongruent pattern of genealogies between mitochondrial and autosomal genomes. Using samples that likely retained the original genetic components of subspecies with the least admixture, we estimated the pattern and timing of divergence among the subspecies. The estimated divergence time of the three subspecies was 187,000–226,000 years ago. These results will help us to understand the genetic diversity of wild mice on a global scale, and the findings will be particularly useful in future biomedical and evolutionary studies involving laboratory mice established from such wild mice.

Mus musculus populations in Western Australia lack VKORC1 mutations conferring resistance to first generation anticoagulant rodenticides: Implications for conservation and biosecurity.

Humans routinely attempt to manage pest rodent populations with anticoagulant rodenticides (ARs). We require information on resistance to ARs within rodent populations to have effective eradication programs that minimise exposure in non-target species. Mutations to the VKORC1 gene have been shown to confer resistance in rodents with high proportions of resistance in mice found in all European populations tested. We screened mutations in Mus musculus within Western Australia, by sampling populations from the capital city (Perth) and a remote island (Browse Island). These are the first Australian mouse populations screened for resistance using this method. Additionally, the mitochondrial D-loop of house mice was sequenced to explore population genetic structure, identify the origin of Western Australian mice, and to elucidate whether resistance was linked to certain haplotypes. No resistance-related VKORC1 mutations were detected in either house mouse population. A genetic introgression in the intronic sequence of the VKORC1 gene of Browse Island house mouse was detected which is thought to have originated through hybridisation with the Algerian mouse (Mus spretus). Analysis of the mitochondrial D-loop reported two haplotypes in the house mouse population of Perth, and two haplotypes in the population of Browse Island. Both house mouse populations exhibited no genetic resistance to ARs, in spite of free use of ARs in Western Australia. Therefore weaker anticoagulant rodenticides can be employed in pest control and eradication attempts, which will result in reduced negative impacts on non-target species. Biosecurity measures must be in place to avoid introduction of resistant house mice, and new house mouse subspecies to Western Australia.

Polymorphism in vkorc1 Gene of Natal Multimammate Mice, Mastomys natalensis, in Tanzania.

Resistance of rodents to anticoagulant rodenticides has emerged in several areas across the world. Single nucleotide mutations in the vkorc1 gene have been shown to elicit various levels of anticoagulant resistance, and these mutations are prevalent in several Rattus and Mus musculus populations. In sub-Saharan Africa, the Natal multimammate mouse, Mastomys natalensis, is one of the most damaging pests to crops, and anticoagulant poisons such as bromadiolone are frequently used to control these rodents in agricultural fields. Here, we investigate if vkorc1 shows any polymorphism in natural populations of M. natalensis. We sequenced the third exon of vkorc1 of 162 M. natalensis captured from 14 different agricultural sites in Morogoro Region, Tanzania. In addition to 6 SNPs in the noncoding flanking region, we detected 3 nonsynonymous SNPs in this exon: 10 animals (6.2%) carried a Leu108Val variant, 2 animals (1.2%) an Ala140Thr variant, and 1 animal (0.6 %) an Arg100His variant, all 3 in heterozygous form. Ala140Thr is just one residue from a mutation known to be involved in anticoagulant resistance in Rattus and Mus. While in vitro or in vivo experiments are needed to link vkorc1 genetic polymorphisms to level of VKOR activity and anticoagulant susceptibility, our results suggest that M. natalensis individuals may vary in their response to anticoagulant rodenticides. This is the first vkorc1 sequence data from a species outside the Rattus or Mus genera, and for the first time from a rodent species endemic to Africa.

Abundance, age structure and reproductive patterns of Rattus norvegicus and Mus musculus in two areas of the city of Buenos Aires

The aim of this research was to compare the abundance, growth, age structure and reproductive patterns of Rattus norvegicus and Mus musculus populations of a shanty town and a parkland in the city of Buenos Aires, Argentina. Live trapping of rodents was conducted in each area every 2 months, from September 2006 to August 2007. Abundance of R. norvegicus and M. musculus was significantly higher in the shanty town than in the parkland. Abundance of both species showed significant differences between trapping sessions in both study sites. Both species showed a peak in abundance in summer in the parkland and also in autumn in the shanty town. Age structure of both species differed between summer–autumn and winter–spring in the shanty town. In the parkland, pregnant females of both species were only found in spring–summer. No significant differences were found in any of the reproductive parameters compared between the shanty town and the parkland. Our results suggest that the shanty town represents a favourable but not constant habitat for rodents throughout the year.

The expression of transmission ratio distortion (TRD) and the frequency of carriers of t haplotypes in natural populations of house mice Mus musculus

The character of TRD (transmission ratio distortion) was analyzed using the database formed on the basis of the results obtained for a collection of mice carrying different t haplotypes during 30 years of experimental observations. Quantitative TRD parameters were determined in male mice with T/tw genotypes from natural populations in crosses with females from laboratory collections. The TRD value varied in the range from 0.41 to 0.74. The frequencies of t haplotypes in natural Mus musculus populations from different regions (Moscow, Moscow oblast, Tajikistan, Lithuania, and Mongolia) varied from 12% (Tigrovaya Balka, Tajikistan) to 44% (Ulan-Bator, Mongolia). The factors and mechanisms determining a low frequency of t haplotypes in natural populations are discussed.

Using blocks of linked single nucleotide polymorphisms as highly polymorphic genetic markers for parentage analysis

Single nucleotide polymorphisms (SNPs) are plentiful in most genomes and amenable to high throughput genotyping, but they are not yet popular for parentage or paternity analysis. The markers are bi-allelic, so individually they contain little information about parentage, and in nonmodel organisms the process of identifying large numbers of unlinked SNPs can be daunting. We explore the possibility of using blocks of between three and 26 linked SNPs as highly polymorphic molecular markers for reconstructing male genotypes in polyandrous organisms with moderate (five offspring) to large (25 offspring) clutches of offspring. Haplotypes are inferred for each block of linked SNPs using the programs Haplore and Phase 2.1. Each multi-SNP haplotype is then treated as a separate allele, producing a highly polymorphic, 'microsatellite-like' marker. A simulation study is performed using haplotype frequencies derived from empirical data sets from Drosophila melanogaster and Mus musculus populations. We find that the markers produced are competitive with microsatellite loci in terms of single parent exclusion probabilities, particularly when using six or more linked SNPs to form a haplotype. These markers contain only modest rates of missing data and genotyping or phasing errors and thus should be seriously considered as molecular markers for parentage analysis, particularly when the study is interested in the functional significance of polymorphisms across the genome.

Pattern of segmental recombination in the distal inversion of mouse t haplotypes.

To examine genetic exchange between t haplotypes and their wild-type homologs, four previously identified mouse Chromosome (Chr) 17 variants termed mosaic haplotypes were analyzed in detail. Three of these haplotypes-one from a Mus musculus population in Bulgaria, one from a Mus domesticus population in Chile, and one from a M. domesticus population in Germany-display properties indicative of the t complex. All four haplotypes are exceptional because they are characterized by the presence of a few wild-type DNA markers in the distal inversion [In(17)4] of a t haplotype chromosome: thus, they are classified as mosaic t haplotypes. The mosaic pattern for each haplotype is distinct, however. We compared the mosaic haplotypes with each other, and with several well-characterized laboratory t haplotypes, by analyzing several DNA markers in the In(17)4 region of the t complex, where all of the mosaicism occurs. We used a combination of high-resolution restriction mapping, DNA sequencing, and analysis of new DNA markers to classify the haplotypes. This analysis shows that segmental exchange, either by gene conversion or double crossing-over, has occurred at molecular markers in the vicinity of a gene, Dnahc8, that is a candidate for the t complex distorter locus Tcd2. While it is unclear whether segmental exchanges have included the Tcd2 gene, it is apparent that several independent recombination events have occurred in In(17)4 during the recent evolution of t haplotypes.

Salivary Androgen-binding Protein Variation in Mus and Other Rodents

We have searched for genetic variation in the expression of salivary androgen-binding protein (ABP) in a wide variety of mice and other rodents. ABP was present in the salivas of mice of all species and subspecies studied. Genetic studies have identified three common variants of the ABP Alpha subunit (Abpaa, Abpab, and Abpac) in Mus musculus populations with distributions that correspond roughly to those of the subspecies studied (domesticus, musculus, and castaneus, respectively). It appears that the ABP a and b polymorphisms conform to the hybrid zone between the domesticus and musculus subspecies characterized by others. Our studies suggest that the presence of Abpab in inbred strains may be due to a M. m. musculus contribution, perhaps via oriental fancy mice bred to European mice in the early lines leading to the common inbred strains. The relatively common occurrence of the ABP a type in other Mus species leads us to conclude that it is the ancestral type in mice. Further, the observation of what amounts to unique alleles in the three different subspecies indicates that microevolution of the protein has occurred. In a broader survey, ABP was also found in the salivas of Murid and Cricetid rodents generally. These findings suggest that ABP has an important functional role in rodent salivas.

The use of restriction endonucleases to compare mitochondrial dna sequences in Mus musculus: A detailed restriction map of mitochondrial DNA from mouse L cells

The complete mitochondrial genome of a chloramphenicol-resistant, oligomycin-resistant mouse L cell has been cloned in E. coli. Using fragments of this DNA, purified by preparative agarose gel electrophoresis, we have mapped 139 restriction sites cleaved by 15 endonucleases. We have then compared the positions of these sites with those found in mtDNA purified from several other L-cell lines, from the tissue of several strains of laboratory mice, and from a plasmid containing mtDNA of a single, wild Mus musculus sample. The results indicate that all of the L-cell mtDNAs are identical except at a single EcoRI site, and that the L-cell sequence is identical to that found in mtDNA from normal tissue. They also suggest that mtDNA sequences found in North American Mus musculus populations may be much more homogeneous than expected from analysis of other rodents.

New Robertsonian metacentrics in another 22-chromosome mouse population in Central Apennines.

New centric fusions (Rb 8-14 Rma) have been described in a 22-chromosome karyotype from a Mus musculus population in southern Central Italy. The diakinesis of hybrids obtained by crossing mice with different 22-chromosome complements show a ring-multivalent made up 16 metacentrics pairing arm-to-arm.

STUDIES OF NATURAL POPULATIONS OF MUS. I. BIOCHEMICAL POLYMORPHISMS AND THEIR BEARING ON BREEDING STRUCTURE.

Although the house mouse (Mus musculus L.) has received considerable attention from both the ecologist and the geneticist, very little information is available about genetic aspects of natural Mus musculus populations. Reasons for the paucity of such information are without doubt numerous. One which became obvious early in the current study is that most of the genetic variants known in the house mouse were discovered and studied in mice bred in the laboratory, under highly protective conditions. These same variants do not exist with any high frequency under more stringent conditions of the natural environment and so are of little value in the investigations of genetic aspects of natural populations. Only three systems have given any information about genetic parameters in natural populations of Mus musculus: (1) the agouti locus (Philip, 1938; Engels, 1948), (2) the T locus (Dunn, 1957a, b; Dunn and Suckling, 1956; Lewontin and Dunn, 1960) and (3) discontinuous skeletal variants (Gruneberg, 1952; Weber, 1950; Deol, 1958; Berry, 1963). Of these, the first is relatively straightforward, and has given some evidence, unfortunately very limited and conflicting, about breeding structure in the house mouse. The T locus is likewise of limited value in this respect because of the number of complications involved (e.g., homozygous lethality, high transmission ratio of t-bearing sperm in heterozygous males, the vari-