This study presents a novel GNN-based model for multiscale thermal characterization of heterogeneous materials with complex microstructures. It incorporates relationships between composition, structure, and thermal transport across multiple scales, leveraging the structure of GNNs. Results demonstrate enhanced performance of the GNN-based model compared with existing methods. Specifically, the GNN model improved thermal conductivity prediction with a mean absolute error of 0.18 W/mK (15 % improvement over the Bayesian neural network-based model) and provided a 30x speedup in computation time. The model successfully connected atomic-scale interactions to macroscale properties, achieving less than 5 % error in predicting effective thermal conductivity from one scale to another. Furthermore, it demonstrated the ability to capture nonlinear thermal transport phenomena with 92 % accuracy. The model also improved the prediction of the transient thermal responses by 20 %, accurately capturing the time-varying behaviour of materials. This work also proved the model’s ability to handle new material systems with transfer learning, achieving 88 % accuracy. Finally, Bayesian neural networks integrated into the model provided uncertainty quantification, with 95 % of experimental measurements falling within the predicted bounds. This work demonstrated the ability of the framework to handle complex microstructures, nonlinear phenomena, and transient responses while maintaining a computationally efficient model that can enable real-time applications in design and optimization needed in modern materials innovation. It represents a powerful tool for data-driven multiscale mechanics that could accelerate materials research and development for the aerospace, electronics cooling, and additive manufacturing industries.
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