Developing a green and efficient catalyst for oxidant activation to tackle refractory organics pollution is challenging for water purification. In this study, we prepared a zero-valent iron-based bimetallic catalyst (ZVI/Mn3O4) for periodate (PI) activation using a simple and convenient ball-milling method. Electrochemical characterization and theoretical calculations confirm that the synergy between Fe and Mn enables the ZVI/Mn3O4 system to exhibit higher electron transfer efficiency compared to its individual components. Consequently, the ZVI/Mn3O4/PI system demonstrated enhanced PI activation and significantly improved removal of sulfamethoxazole (SMX), with reaction rates being 18.61 to 57.01 times higher than the comparison systems. The influence of various physicochemical parameters on SMX removal was investigated, confirming the wide tolerance ZVI/Mn3O4/PI system towards multiple aqueous matrices. Furthermore, the scalability of this system for industrial applications was validated through the preparation of larger batches of catalysts (4.21 g per batch) and testing in a custom-designed magnetic plate continuous-flow reactor. Quenching experiments and electron spin resonance tests confirmed that •O2– and 1O2 were the primary reactive species responsible for SMX degradation, with no toxic iodine byproducts detected, attributed to the carefully designed catalyst, which optimized the interaction between PI and the catalyst. Based on these findings, a potential catalytic mechanism and degradation pathway were proposed, highlighting ZVI's role as an electron pump to enhance Mn3O4's activation of PI. Additionally, toxicity assessments via prediction, zebrafish cultivation, wheat germination, and E. coli culture confirmed the excellent detoxification capability of ZVI/Mn3O4/PI system for SMX degradation. Overall, this work provides a new research paradigm for the convenient manufacture of ZVI-based catalysts and the development of advanced techniques for PI activation in water purification.