Multilocus Phylogenetic Analysis Research Articles

First report of leaf blight on pumpkin caused by Nigrospora sphaerica in China.

Pumpkin (Cucurbita moschata), which belongs to the gourd family (Cucurbitaceae), is widely planted throughout the world. In June 2023, many pumpkin plants (cv. Miben) displayed leaf blight and chlorosis in fields located in Suizhou (31.99°N, 113.02°E), Hubei Province, China. The disease incidence ranged from 30 to 40% in nine fields, 6.3 ha in total. The symptoms were irregularly shaped lesions that expanded along the mid-vein until the leaf turned brown and wilted. Fungal isolations were performed as described previously (Liu et al. 2023). Twenty pumpkin leaf samples with typical symptoms were collected and cut into 1 cm×1 cm pieces. The diseased tissue was surface-sterilized in 75% ethanol for 30 sec, plated on potato dextrose agar (PDA) medium and incubated at 25℃ for 3 days. Then, the emerging single fungal hyphal tip was transferred onto PDA plates to obtain purified isolates. A total of eighteen isolates on PDA plates were initially white and then developed to dark gray. The 5-day-old cultures growing on mung bean medium produced conidia that were black, single-celled, smooth, spherical or oblate, and ranged in size from 14.5 to 20.8 μm×13.3 to 20.5 μm (n=50). Therefore, the isolates were morphologically identified as Nigrospora sphaerica. Moreover, the genomic DNA of the isolates (HB-P1,HB-P2, and HB-P3) was extracted for amplification and sequencing of the regions of internal transcribed spacer (ITS) (White et al. 1990), nuclear large subunit rRNA (nLSU) (O'Donnell 1992; Rehner and Samuels 1994), and β-tubulin (TUB2) (Glass and Donaldson 1995), with primers ITS1/ITS4, LROR/LR3, and Bt2a/Bt2b, respectively. Sequences were submitted to GenBank under accession numbers PP348112, PP348113, PP348114 (ITS), PP411414, PP411415, PP411416 (nLSU), and PP357438, PP357439, PP357440 (TUB2). BLASTn showed that the sequences ITS, nLSU, and TUB2 of HB-P1, HB-P2, and HB-P3 had >99% nucleotide identities ((ITS: 100%, 508/508 bp, MF996488.1; 99.8%, 506/507, ON326588.1; 100%, 500/500 ,MK748317.1), (nLSU: 99.83%, 573/574, KT462720.1; 99.83% , 574/575 bp, KT462720.1; 99.65%, 575/577, KT462720.1), and (TUB2: 100%, 388/388, MN719407.1; 99.74%, 387/388, MN719407.1; 100%, 387/387, MN719407.1)) with Nigrospora sphaerica, respectively. A multilocus (ITS, nLSU and TUB2) phylogenetic analysis indicated that the isolates were Nigrospora sphaerica. Pathogenicity of three isolates were tested on pumpkin plants (cv. Miben). Fifteen pumpkin plants were inoculated by spraying the leaves (1×106 spores/ml), respectively, and 10 pumpkin plants were treated with sterile water as a negative control. All plants were incubated in an artificial climate box (LongYue, ShangHai) at 25℃ for 12 days. The experiment was repeated three times. Twelve days later, the inoculated pumpkin plants developed symptoms of leaf blight, while the control plants remained healthy. Then, pathogens were re-isolated from the each leaf of inoculated pumpkin plants and not from the control plants. Nigrospora sphaerica has been previously reported to cause leaf spot on watermelon in Malaysia (Ismail and Abd Razak 2021). To our knowledge, this is the first report of N. sphaerica causing leaf blight on pumpkin in China. This new disease can cause leaf blight, which may affect pumpkin productivity.

Revisiting Stygocapitella (Annelida, Parergodrilidae) in Japan, with insights into their amphi-Pacific diversification.

Polychaetes are typically found in marine environments with limited species adapting to semi-terrestrial habitats. The genus Stygocapitella comprises interstitial polychaetes dwelling in sandy beach areas around or above the high-water line. Based on molecular data, previous studies suggested the presence of multiple cryptic species in some different localities in the world lumped together as Stygocapitella subterranea. In Japan, reports on Stygocapitella were scarce, with only one species having been documented 40 years ago at Ishikari Beach in Hokkaido by the name of S. subterranea. We revisited these earlier findings and uncovered the presence of two distinct species in Stygocapitella. One of these species is herein named Stygocapitella itoi sp. nov., while the other corresponds to S. budaevae, originally described from the Russian Far East. Stygocapitella itoi sp. nov. possesses a chaetal pattern similar to that of S. australis, S. furcata and S. pacifica but can be distinguished from the congeners by two characters: a slightly forked pygidium and forked chaetae consisting of two teeth and two outer prongs. Our multi-locus phylogenetic analysis showed close relationships across the Pacific Ocean in two separated lineages in the genus, suggesting ancient dispersal or allopatric speciation after vicariance events.

A New Species of Biscogniauxia Associated with Pine Needle Blight on Pinus thunbergii in China

In June 2020, needle blight symptoms on Pinus thunbergii were discovered in Bazhong City, Sichuan Province, China. Fungal isolates were obtained from the pine needles of P. thunbergii. After examining morphological characteristics and conducting multi-locus (ITS, ACT, TUB2 and RPB2) phylogenetic analyses, the isolates SC1–SC5 were determined to be a new species, Biscogniauxia sinensis. Genealogical Concordance Phylogenetic Species Recognition with a pairwise homoplasy index test was used to further verify the results of the phylogenetic analyses. The morphology and phylogenetic relationships between this new species and other related Biscogniauxia species were discussed. To our knowledge, this is also the first report of Biscogniauxia sinensis associated with pine needle blight on P. thunbergii in China. The needle damage of P. thunbergii associated with Biscogniauxia sinensis will detrimentally affect the carbon absorption and photosynthetic efficiency of P. thunbergii, further reduce the absorption of nutrients by Japanese black pine and may lead to the imbalance of pine forest conditions, which will have a negative impact on the forest ecological system.

Didymellaceae species associated with tea plant (Camellia sinensis) in China

Tea plant is one of the most important commercial crops worldwide. The Didymellaceae fungi can cause leaf blight disease of tea plant. In this study, 240 isolates were isolated from tea plant leaves of 10 provinces in China. Combined with multi-locus (ITS, LSU, RPB2 and TUB2) phylogenetic analysis and morphological characteristics, these isolates were identified as 25 species of six genera in Didymellaceae, including 19 known species Didymella coffeae-arabicae, D. pomorum, D. segeticola, D. sinensis, Epicoccum catenisporum, E. dendrobii, E. draconis, E. italicum, E. latusicollum, E. mackenziei, E. oryzae, E. poaceicola, E. rosae, E. sorghinum, E. tobaicum, Neoascochyta mortariensis, Paraboeremia litseae, Remotididymella anemophila and Stagonosporopsis caricae, of which 15 species were new record species and six novel species, named D. yunnanensis, E. anhuiense, E. jingdongense, E. puerense, N. yunnanensis and N. zhejiangensis. Amongst all isolates, D. segeticola was the most dominant species. Pathogenicity tests on tea plant leaves showed that E. anhuiense had the strongest virulence, while E. puerense had the weakest virulence. Besides, D. pomorum, D. yunnanensis, E. dendrobii, E. italicum, E. jingdongense, E. mackenziei, E. oryzae, E. rosae, E. tobaicum, N. mortariensis, N. yunnanensis, N. zhejiangensis and R. anemophila were non-pathogenic to the tea plant.

Aeromonas trota Is Highly Refractory to Acquire Exogenous Genetic Material.

Aeromonas trota is sensitive to most antibiotics and the sole species of this genus susceptible to ampicillin. This susceptibility profile could be related to its inability to acquire exogenous DNA. In this study, A. trota isolates were analyzed to establish their capacity to incorporate foreign DNA. Fourteen strains were identified as A. trota by multilocus phylogenetic analysis (MLPA). Minimal inhibitory concentrations of antibiotics (MIC) were assessed, confirming the susceptibility to most antibiotics tested. To explore their capacity to be transformed, A. trota strains were used as recipients in different horizontal transfer assays. Results showed that around fifty percent of A. trota strains were able to incorporate pBAMD1-2 and pBBR1MCS-3 plasmids after conjugal transfer. In all instances, conjugation frequencies were very low. Interestingly, several isoforms of plasmid pBBR1MCS-3 were observed in transconjugants. Strains could not receive pAr-32, a native plasmid from A. salmonicida. A. trota strains were unable to receive DNA by means of electroporation, natural transformation or vesiduction. These results confirm that A. trota species are extremely refractory to horizontal gene transfer, which could be associated to plasmid instability resulting from oligomerization or to the presence of defense systems against exogenous genetic material in their genomes. To explain the poor results of horizontal gene transfer (HGT), selected genomes were sequenced and analyzed, revealing the presence of defense systems, which could prevent the stable incorporation of exogenous DNA in A. trota.

Novel species, morpho‐molecular identification and pathogenicity of Allophoma (Didymellacaeae) causing leaf spots of true mangroves and mangrove associates in Thailand

AbstractTrue mangroves and mangrove associates are salt‐tolerant trees and shrubs that serve a critical role in preserving the ecological balance of tropical and subtropical estuarine environments. However, they are not immune to the damage caused by fungal pathogens. In this study, leaves exhibiting leaf spot symptoms were gathered from mangrove estuary and forests in Prachuap Khiri Khan, Thailand. Through morphological and multilocus phylogenetic analyses (LSU, ITS, RPB2 and TUB2) along with genealogical concordance phylogenetic species recognition, we identified Allophoma acanthi sp. nov. from Acanthus ilicifolius. Additionally, A. minor was identified as the causative agent of leaf spots in true mangrove and mangrove associate species, namely, Acanthus ilicifolius, Combretum sp., Hibiscus tiliaceus, Intsia bijuga, Lumnitzera racemosa and Sonneratia alba. We also provide evidence to support the synonymization of A. thunbergiae with A. minor. All eight isolates of Allophoma species in this study demonstrated pathogenicity to their original hosts with varied virulence, confirming Koch's postulates. Our findings contribute to the understanding of fungal pathogens affecting true mangroves and mangrove associates.

Harposporium incensis sp. nov. a South American cordycipitoid species exhibiting inter-phylum host-jumping and having potential as a biological control agent for pest management

ABSTRACT Macro- and microscopic morphological studies and multilocus phylogenetic analysis were made on larval specimens of a ghost moth collected from a pigeon pea plantation in Huánuco, Peru. DNA sequences from the cadaver and the fungal isolates obtained represented a monophyletic clade based on the phylogeny. All morphological characters and molecular data showed that the pathogenic fungus infecting the ghost moth larvae was an unknown cordycipitoid species, herein described as, Harposporium incensis sp. nov. based on morphological features and multilocus phylogenetic analysis on the cadaver and fungus isolated from the same specimen. The far-related and ecologically different hosts of teleomorph and anamorph of this new species display a peculiar inter-phylum host jumping between the insect Trichophassus giganteus of the phylum Arthropoda and the nematode Caenorhabditis elegans of the phylum Nematoda and have biological control potential.

Identification and pathogenicity of Clonostachys spp. and its co‐inoculation with Fusarium species on soybean root

AbstractSoybean is an important protein and oil crop around the world, widely cultivated in Heilongjiang province, China. In the summer of 2021, soybean root rot samples were collected from farms in multiple regions of Heilongjiang province to isolate pathogens. Twenty‐seven fungal isolates with similar morphology were found, causing soybean root discolouration and blackness leading to root rot, but which had relatively mild pathogenicity, with an average disease index of 13.69–32.25. Morphological features and multilocus phylogenetic analyses divided these isolates into four species: Clonostachys rosea (48.2%), C. rosea f. sp. rosea (14.8%), C. chloroleuca (29.6%) and Clonostachys sp. (7.4%). Co‐inoculation of these four species with two important pathogenic Fusarium species that can cause soybean root rot, F. annulatum and Fusarium sp. 1 in the Fusarium oxysporum species complex (FOSC), showed that C. rosea and Clonostachys sp. significantly reduced the pathogenicity of F. annulatum to soybean root, while C. rosea f. sp. rosea and C. chloroleuca slightly increased the pathogenicity of F. annulatum. C. rosea, Clonostachys sp., C. chloroleuca and C. rosea f. sp. rosea slightly reduced the pathogenicity of Fusarium sp. 1 in the FOSC. Our research is the first to report Clonostachys sp., C. chloroleuca and C. rosea f. sp. rosea causing soybean root rot in Heilongjiang province, China, and that these four Clonostachys species can affect the pathogenicity of Fusarium species, alleviating or aggravating soybean root rot. The findings of this study provide new insights into exploring the interactions between pathogens and thus effectively controlling them.

Identification and Pathogenicity of Fungal Species Associated with Branch Canker and Shoot Blight on Persimmons (Diospyros kaki) in California.

Persimmon is a relatively new crop to California agriculture. Asian persimmons (Diospyros kaki) are the dominant species commercially cultivated in the United States, primarily grown in California, covering approximately 1,153 ha of bearing trees. In the growing seasons of 2020 and 2021, unusual shoot blight and branch cankers were observed in several persimmon orchards in San Joaquin and Solano counties in California. The most prevalent symptoms were well-defined black discoloration in the cambium and streaking in the vascular tissues of green shoots. On woody branches and old pruning wounds, symptoms manifested as black wedge-shaped cankers. Isolations from affected tissues revealed the occurrence of Diaporthe species, including D. chamaeropis, D. foeniculina, and an undescribed Diaporthe sp. as the most frequent isolated pathogens, followed by Eutypella citricola and Phaeoacremonium iranianum. The isolates were identified through multilocus phylogenetic analyses using nucleotide sequences of the rDNA internal transcribed spacer, β-tubulin, and translation elongation factor 1-alpha genes. To fulfill Koch's postulates, mycelium plugs of the various fungal species identified were inserted in 2-year-old branches of mature persimmon trees after making wounds using a corkborer in field conditions. Results showed that Diaporthe spp., E. citricola, and P. iranianum are the main causal agents of branch canker and shoot dieback of persimmon trees in California, with Diaporthe spp. being the most frequently isolated pathogen.

Endophytic species of Nigrospora from grasses and shrubs of Shadegan International Wetland, with new species and records from Iran.

The"Shadegan International Wetland" (SIW) is one of the wetlands internationally recognized in the Ramsar convention. The vegetation of this wetland ecosystem consists of mostly grasses and shrubs that host a large number of fungi including endophytes. In this study, Nigrospora isolates were obtained from healthy plants of this wetland and its surrounding salt marshes and identified based on morphological features and multilocus phylogenetic analyses based on three DNA loci, namely the internal transcribed spacer regions 1 and 2 including the intervening 5.8S nuclear ribosomal DNA (ITS), β-tubulin (tub2), and elongation factor 1-α (tef1-α). Accordingly, the following Nigrospora species were identified: N. lacticolonia, N. oryzae, N. osmanthi, N. pernambucoensis and a novel taxon N. shadeganensis sp. nov., which is described and illustrated. To the best of our knowledge, 10 new hosts for Nigrospora species are here reported, namely Aeluropus lagopoides, Allenrolfea occidentalis, Anthoxanthum monticola, Arthrocnemum macrostachyum, Cressa cretica, Halocnemum strobilaceum, Seidlitzia rosmarinus, Suaeda vermiculata, Tamarix passerinoides, and Typha latifolia. Moreover, the species N. lacticolonia and N. pernambucoensis are new records for the mycobiota of Iran.

Cordyceps cateniannulata: An endophyte of coffee, a parasite of coffee leaf rust and a pathogen of coffee pests

Here, we report on a Cordyceps species entering into a multi-trophic, multi-kingdom association. Cordyceps cateniannulata, isolated from the stem of wild Coffea arabica in Ethiopia, is shown to function as an endophyte, a mycoparasite and an entomopathogen. A detailed polyphasic taxonomic study, including a multilocus phylogenetic analysis, confirmed its identity. An emended description of C. cateniannulata is provided herein. Previously, this species was known as a pathogen of various insect hosts in both the Old and New World. The endophytic status of C. cateniannulata was confirmed by re-isolating it from inoculated coffee plants. Inoculation studies have further shown that C. cateniannulata is a mycoparasite of Hemileia vastatrix, as well as an entomopathogen of major coffee pests; infecting and killing Hypothenemus hampei and Leucoptera coffeella. This is the first record of C. cateniannulata from Africa, as well as an endophyte and a mycoparasite. The implications for its use as a biocontrol agent are discussed.

Mixed infections of Tomato yellow leaf curl New Delhi virus and a ‘Candidatus Phytoplasma asteris’ strain in zucchini squash in Italy

A new disease syndrome of zucchini squash was observed in Southern Italy, in 2018 and again in 2020. Affected plants were severely stunted and leaves were bent downwards, small, stiff, thick, leathery, and had interveinal chloroses. In addition, flowers were virescent and fruits were deformed and often cracked. Disease incidence was 20 and 30% in two different zucchini cultivations in Campania region (Southern Italy). Tomato yellow leaf curl New Delhi virus (ToLCNDV) was detected in eight samples, by loop-mediated isothermal amplification–based (LAMP) kit and by PCR and Sanger sequencing of the AV1 gene. Phytoplasmas were detected in the same samples using nested PCR assays with primer pairs P1/P7 and R16F2n/R16R2. Phytoplasma associations in plant samples were confirmed using specific primers for the multilocus genes SecY, tuf and rp. Sequence comparison of multilocus genes and phylogenetic analyses of the 16S rDNA gene confirmed the association of a phytoplasma strain closely related to ‘Candidiatus Phytoplamsa asteris’. This is the first report of mixed infections of ToLCNDV and a putative ‘Ca. Phytoplamsa asteris’ strain in zucchini, associated with a new Squash-Phytoplasma-Begomovirus (SqPB) disease syndrome.

First Report of Neofusicoccum parvum Causing Seedpod Blight on Lotus (Nelumbo nucifera) in China.

Lotus (Nelumbo nucifera Gaertn.) is a widely cultivated plant in China, and the fruit lotus variety has a high economic value attributed to the exquisite flavor of its fresh seeds. During the summer of 2023, an unidentified blight was observed affecting lotus seedpods in Jiande City, Zhejiang province, with approximately 65% of seedpods impacted in a 130-hectare area. The initial symptoms included dark purple spots on the lotus seedpod surface, which gradually expanded over time. After 5 to 7 days, the entire seedpod turned black, withering, and rendering the lotus seeds inedible. To identify the causal agent, tissues from symptomatic seedpods were excised and disinfected in 75% ethanol for 60 s, and washed twice in sterile distilled water. The disinfected symptomatic tissues (5 × 5 mm) were plated on potato dextrose agar (PDA), incubated at 25 ℃, transferred hyphal tips to obtain pure isolates after 3 days. Fungal colonies exhibiting Botryosphaeriaceae morphology were isolated from 33% of the samples (n = 15). Pure cultures were grown on PDA for both morphological and molecular identification. The colonies displayed a white aerial mycelium, turning olivaceous grey after 7 days. Pycnidia were produced within 3 weeks on PDA with added sterilized healthy lotus seedpod pieces on the surface. Conidia were hyaline, unicellular, ellipsoidal, 12.65 to 20.72 × 3.92 to 9.38 μm in size (mean 16.67 × 6.24 μm, n = 100). To determine the fungal species, genomic DNA was extracted from one representative isolate (ZJUP1112-1), to amplify four gene loci through polymerase chain reactions (PCR): rDNA internal transcribed spacer (ITS) with primers ITS1/ITS4, rDNA large subunit (LSU) with LR0R/LR5, the translation elongation factor 1-alpha gene (tef1) with EF1-728F/EF1-986R, and β-tubulin gene (tub2) with Bt2a/Bt2b. The PCR products were Sanger sequenced in Zhejiang Shangya biotechnology co., LTD, and the resulting sequences were assembled and deposited in GenBank (ITS: OR740546; LSU: OR740547; tef1: OR776996; tub2: OR776997). BLAST searches indicated the highest nucleotide sequence identity with the reference strains of Neofusicoccum parvum CMW 9081 (ITS: 98.8%, AY236943; LSU: 100%, AY928045; tef1: 99.6%, AY236888; tub2: 99.3%, AY236917). Multi-locus phylogenetic analyses revealed that isolate ZJUP1112-1 formed a highly supported clade with N. parvum. Pathogenicity tests were performed on healthy lotus seedpods using mycelial plugs (5 mm diameter) from actively growing colonies of ZJUP1112-1 that were placed onto the front and side of the seedpods (6 each). Controls received PDA plugs. Treated seedpods were wrapped with parafilm and incubated at 25 ℃ and the experiment was repeated three times. After 5 days, dark purple lesions were observed on the inoculated seedpods, whereas controls remained symptomless. The same isolate was recovered from the margin of resulting lesions and confirmed by morphology, thus fulfilling Koch's postulates. N. parvum is a polyphagous pathogen causing blights and fruit rot on multiple economically important fruit crops, such as cacao (Puig et al. 2019), walnut (Chen et al. 2019), pistachio (Lopez-Moral et al. 2020), chestnut (Seddaiu et al. 2021), blueberry (Spetik et al. 2023) and mango (Polizzi et al. 2022), among others. To the best of our knowledge, this is the first report of N. parvum causing seedpod blight on lotus seedpods in China, which contributes to a better understanding of the pathogens affecting this plant species in China.

Lappodochium lageniforme transferred to Botryoderma, with validation of the name Botryoderma rostratum (Chaetomiaceae, Sordariales)

The phylogenetic position and taxonomic status of the monotypic genus Lappodochium Matsush. and its constituent species Lappodochium lageniforme Matsush. have long been uncertain. A multilocus phylogenetic analysis of combined ITS, LSU, rpb2 and tub2 datasets and morphological data were used to establish relationships of Lappodochium lageniforme within the Chaetomiaceae. Phylogenetic analyses revealed a strongly supported monophyletic clade of Lappodochium lageniforme with Botryoderma strains. These results provide sufficient data to re-examine the phylogenetic position of Lappodochium and propose the new combination Botryoderma lageniforme (Matsush.) Gusmão, G.G.Barreto & M.G.A.Primo. The previously invalidly published B. rostratum is also validated, as B. rostratum Papendorf & H.P.Upadhyay ex Gusmão & G.G.Barreto. We also provide a key and synopsis of all accepted Botryoderma species.

Diversity of culturable fungi in six Tibetan Plateau lakes, with descriptions of eight new taxa

ABSTRACT The combination of low temperatures, oligotrophic conditions, high altitude, and varying salinity in Tibetan Plateau lakes endows them with a wealth of distinctive fungal resources. This study aimed to investigate the diversity of culturable fungi in sediment and water samples collected from six lakes located on the Tibetan Plateau at elevations above 4,500 m. A total of 843 fungal strains were isolated by dilution plate method using four different media. Initial ITS analyses revealed that they belong to 156 species across 83 genera, spanning 50 families, 26 orders, 12 classes, and 6 phyla. Further morphological and multi-locus phylogenetic analyses were conducted, resulting in the formal descriptions of a new genus, Xizangia, and seven new species, including Alternaria xizangensis, Emericellopsis ovoidea, Myceliophthora xizangica, Preussia cylindricalis, Preussia sedimenticola, Pseudeurotium sedimenticola, and Xizangia sedimenticola. This research provides insights into the biodiversity of culturable fungi in the unique and extreme ecosystem, shedding light on the potential discovery of novel species and genera.

Shoot blight of Pinus bungeana caused by Diplodia sapinea newly reported in China

Pinus bungeana is a rare and endangered plant in China with high ornamental value. In September 2022, P. bungeana shoot blight was discovered in Changzhou, Jiangsu, China. This disease led to the chlorosis, withering and death of the stems and needles of shoot tips of the host. It seriously affected the growth of plants. The fungus was identified to be Diplodia sapinea, based on morphological characteristics and multilocus phylogenetic analyses of ITS region (the internal transcribed spacer) and EF gene (elongation factor 1-alpha). The pathogenicity test was carried out by inoculating the tips of the shoots using conidial suspension, and the Koch's postulates were confirmed. This is the first report of P. bungeana blight caused by D. sapinea in the world.

Ascochyta erotica sp. nov. Pathogenic on Convolvulus arvensis

Convolvulus arvensis is an herbaceous dicotyledonous plant in the Convolvulaceae family that is native to Europe and Asia. It is a perennial soboliferous plant and is one of the most harmful weeds. This weed is successful in many types of climates, including temperate, tropical, and Mediterranean climates, but it is most troublesome for agriculture throughout the temperate zone. In this study, several pathogenic isolates were collected from this host. The internal transcribed spacer (ITS) and large subunit (28S) or ribosomal DNA, partial DNA-directed RNA polymerase II subunit (rpb2), and β-tubulin (tub2) genes were amplified and sequenced for all the isolates studied. Further, both a multilocus phylogenetic analysis of DNA sequences and an analysis of morphological features were implemented. Based on the results obtained, all the studied isolates were found to be distinct from any described species in the genus Ascochyta and are, therefore, described here as a new species Ascochyta erotica sp. nov. The pathogenicity of A. erotica sp. nov. was also tested and confirmed on leaf segments of C. arvensis.

Paramphibambusabambusicola gen. et. sp. nov., Arecophilaxishuangbannaensis and A.zhaotongensis spp. nov. in Cainiaceae from Yunnan, China.

Morphological comparisons and multi locus phylogenetic analyses (base on the combined genes of ITS, LSU, rpb2 and tub) demonstrated that three new saprobic taxa isolated from bamboo belong to Cainiaceae. These taxa comprise a novel genus Paramphibambusa (P.bambusicolasp. nov.) and two new species, Arecophilaxishuangbannaensis and A.zhaotongensis. The three new taxa belong to Cainiaceae (Xylariales, Sordariomycetes) a poorly studied family, which now comprises eight genera. Paramphibambusa can be distinguished from other Cainiaceae genera in having ascomata with a neck and ascospores lacking longitudinal striation, germ slits or germ pores. The two new Arecophila species clustered in a clade with Arecophila sp. and A.bambusae. Detailed morphological descriptions, illustrations, and an updated phylogenetic tree are provided for the new taxa.

First report of Pythium aphanidermatum and Pythium myriotylum causing root rot on chili pepper (Capsicum annuum L.) in Guizhou, China

Chili peppers (Capsicum annuum L.) are popular globally as a vegetable and condiment and are particularly popular in Guizhou, China. Root rot, the most prevalent soil-borne disease affecting chili peppers, is widespread in Guizhou. In 2023, it was observed in 10–20% of six fields, leading to significant economic losses. Eight strains were isolated from rotten roots of ‘Huaxi’ chili samples to support the need for appropriate pathogen control. Four strains were identified as Pythium aphanidermatum (strains: HSLJ-2, HSLJ-4) and Pythium myriotylum (strains: LDLJY-1, LDLJJ-3) through morphological analysis of sporangia, oospores, antheridia, and oogonia; multi-locus phylogenetic analysis of the internal transcribed spacer and mitochondrial cytochrome c oxidase subunit 1 gene regions; followed by pathogenicity testing using inoculated autoclaved wheat seeds. The two Pythium species were thus identified as novel causal agents of chili pepper root rot in Guizhou, China.

Phaeoacremonium philippinense (Togniniales, Sordariomycetes), a novel freshwater fungus from the Philippines

An investigation of freshwater fungi in the Philippines resulted in the collection and isolation of a new species of Phaeoacremonium (Togniniaceae) from unidentified decayed submerged wood. The novel hyphomycetous species, Phaeoacremonium philippinense, shares the same morphology with other members of the genus, such as having short, usually unbranched conidiophores, the presence of three types of phialides, and oblong-ellipsoidal to oblong conidia. A multi-locus phylogenetic analysis of the combined ITS-tub2-act-tef1-α-LSU dataset placed P. philippinense as a sister taxon to P. thailandense and indicated a shared clade with P. sicilianum. Detailed descriptions and photographic illustrations of P. philippinense are provided.