Multigenerational Pedigrees Research Articles

The detection of major loci by segregation and linkage analysis: A simulation study

Simulated multigenerational pedigrees were analyzed using the program GENPED and POINTER to examine the 1) limits of segregation analysis for detecting single locus, two-allele transmission of a dichotomous trait and 2) accuracy of the parameter estimates. Ten data sets of 30 pedigrees each (approximately 25 persons per pedigree) were simulated. The genotypic penetrance values were varied but the population prevalence of the trait was kept constant at 2%. For some data sets a linked marker locus was also simulated. Previous results had shown that a single major locus could be easily detected when the heterozygote penetrance (f1) was high or midway between the two homozygote penetrances. In this study, we found a single major locus could not be consistently detected by either method of segregation analysis when f1 was "low" to "intermediate." Accuracy of the parameter estimates depended on assumptions about the population prevalence. In those cases where the major locus could not be detected by segregation analysis, linkage to a marker locus could be detected as long as the marker was closely linked and there were not phenocopies in the population. Owing to the limited number of simulations in this study, we cannot generalize these findings. However, they provide a basis for further testing of methods of segregation analysis when factors such as the parameter values, family structure, and ascertainment scheme are varied.

Index measures for assessing the mode of inheritance of continuously distributed traits: I, theory and justifications

A class of indices that may be applied to quantitative data on nuclear families and that can help to assess degrees of mode of inheritance is developed. Given phenotype values of spouses x (1) and x (2) and offspring y, the deviation of an offspring value from the midparent is ¦y − 1 2 (x (1) + x (2))¦ , and those from the separate parents are ¦y − x (1)¦ and ¦y − x (2)¦ . The indices called major-gene indices (MGI) investigated are functions of the deviations from midparental values compared to corresponding symmetric functions of the deviations from separate parents. Major-gene indices exceeding 1 may indicate some extent of major-gene inheritance, whereas an MGI less than 1 is suggestive of relatively more polygenic inheritance. Superposition of assortative mating and environmental effects will tend not to shift the MGI greater than 1 for polygenic inheritance, nor will they shift the MGI less than 1 for major-gene factors. The reliance on the proposed indices is reinforced on the basis of a hierarchy of representative models of monogenic and multifactorial inheritance. Extensions of the method to deal with multigenerational pedigrees are briefly discussed.

Linkage relations among 25 autosomal blood, urine, and saliva markers in two large multigenerational pedigrees.

Linkage relations among 25 autosomal blood, urine, and saliva markers in two large multigenerational pedigrees.