Multicolor Fluorescence Imaging Research Articles

Nano-graphene oxide-mediated In vivo fluorescence imaging and bimodal photodynamic and photothermal destruction of tumors

Cancer is one of the major life-threatening diseases among human beings. Developing a simple, cost-effective and biocompatible approach to treat cancers using ultra-low doses of light is a grand challenge in clinical cancer treatments. In this study, we report for the first time that nano-sized graphene oxide (GO) exhibits single-photon excitation wavelength dependent photoluminescence in the visible and short near-infrared (NIR) region, suitable for in vivo multi-color fluorescence imaging. We also demonstrate in both in vitro and in vivo experiments to show that nano GO can sensitize the formation of singlet oxygen to exert combined nanomaterial-mediated photodynamic therapeutic (NmPDT) and photothermal therapy (NmPTT) effects on the destruction of B16F0 melanoma tumors in mice using ultra-low doses (∼0.36 W/cm2) of NIR (980 nm) light. The average half-life span of the mice treated by the GO-PEG-folate-mediated NmPDT effects is beyond 30 days, which is ∼1.8 times longer than the mice treated with doxorubicin (17 days). Overall, the current study points out a successful example of using GO-PEG-folate nanocomposite as a theranostic nanomedicine to exert simultaneously in vivo fluorescent imaging as well as combined NmPDT and NmPTT effects for clinical cancer treatments.

A method for detailed analysis of the structure of mast cell secretory granules by negative contrast imaging.

Secretory granules (SGs) in mast cells contain various molecules that elicit allergy symptoms and are generally considered therapeutic targets. However, the biogenesis, maintenance, regulation, and recycling of these granules remain controversial, mainly due to the lack of suitable live-cell imaging methods. In this study, we applied negative contrast imaging with soluble green fluorescent protein (GFP) expressed in the cytoplasm as a method to validate structural information of mast cell SGs. We evaluated the accuracy of the method in detail, and we demonstrated that it can be used for quantitative analysis. Using this technique, secretory granules, the nucleus, mitochondria, and the cell body were visualized in individual RBL-2H3 mast cells without any influence. When combined with conventional multicolor fluorescence imaging, visualization of SG-associated proteins and SG–SG fusion was achieved. Moreover, 3D images were constructed based on this method, and detailed information on the number, size, and shape of individual SGs was obtained. We found that cell volume was correlated with SG number. In summary, the technique provides valuable and unique data, and will therefore advance SG research.

Multichannel Hyperspectral Imaging and Characterization of Far-Red Fluorophores using a Thin-Film Tunable Filter

Multicolour fluorescence imaging has traditionally been limited to the use of fluorophores with non-overlapping emission spectra. The advent of hyperspectral imaging has made it possible to distinguish signals with partial overlap by acquiring fluorescence over narrow emission bands. We report here the implementation of one such approach, using the Semrock Versachrome™ thin film tunable filter integrated via a custom-built insert into an Olympus IX-83 dual-deck inverted TIRF microscope. We demonstrate the ability to distinguish and resolve the emission spectra of two far-red fluorophores, Alexa 647 and ATTO 680, by varying the angle of incidence of the emitted light on the Versachrome. We have implemented a galvanometer based solution that provides fast and precise control over the transmission band. The high transmission coefficient of the thin film filter allowed us to reduce the exposure time and acquire a full-spectrum sequence in less than 100ms. Deconvolution of the fluorescence signals allowed determination of the relative fluorophore population maximizing the recovery of information. We demonstrate the application of the technique to imaging multiple sub-cellular targets with well-characterized supra-molecular morphology, including cytoskeletal, mitochondrial, plasma membrane and nuclear proteins. This technique for high-speed spectral imaging will bring new applications into focus and improve performance in already established approaches.

Preparation of water-soluble conjugated polymers based multi-color fluorescent systems for biomedical applications

Conjugated polymers (CPs) have gained increasing attention as an optical platform for sensitive detection of biomacromolecules and fluorescent imaging in cellular and animal level due to its excellent light-harvesting and light-amplifying properties. Over the past decades, in order to meet the needs of multi-color fluorescent detection and imaging, researchers have designed and developed a series of multicolor fluorescent systems based on the fluorescence resonance energy transfer properties of conjugated polymers (CPs-FRET). The advantages of these systems include high brightness, excellent photostability, and low cytotoxicity. Multicolor fluorescence encoded detection of target molecules and fluorescence imaging can be achieved using such systems under a single excitation wavelength. In this tutorial review, we describe the FRET mechanism of CPs and the preparation of CPs-FRET based multicolor fluorescent systems, provide a brief review of the recent research progress of such systems in biochemical detection and cell imaging, and discuss the current problems and future direction of such systems.

Novel Mn3[Co(CN)6]2@SiO2@Ag Core–Shell Nanocube: Enhanced Two‐Photon Fluorescence and Magnetic Resonance Dual‐Modal Imaging‐Guided Photothermal and Chemo‐therapy

The versatile Mn3[Co(CN)6]2@SiO2@Ag core-shell NCs are prepared by a simple coprecipitation method. Ag nanoparticles with an average diameter of 12 nm deposited on the surface of Mn3[Co(CN)6]2@SiO2 through S-Ag bonding are fabricated in ethanol solution by reducing silver nitrate (AgNO3 ) with NaBH4 . The NCs possess T1 -T2 dual-modal magnetic resonance imaging ability. The inner Prussian blue analogs (PBAs) Mn3[Co(CN)6]2 exhibit bright two-photon fluorescence (TPF) imaging when excited at 730 nm. Moreover, the TPF imaging intensity displays 1.85-fold enhancement after loading of Ag nanoparticles. Besides, the sample also has multicolor fluorescence imaging ability under 403, 488, and 543 nm single photon excitation. The as-synthesized Mn3[Co(CN)6]2@SiO2@Ag NCs show a DOX loading capacity of 600 mg g(-1) and exhibit an excellent ability of near-infrared (NIR)-responsive drug release and photothermal therapy (PTT) which is induced from the relative high absorbance in NIR region. The combined chemotherapy and PTT against cancer cells in vitro test shows high therapeutic efficiency. The multimodal treatment and imaging could lead to this material a potential multifunctional system for biomedical diagnosis and therapy.

Contribution of the non-effector members of the HrpL regulon, iaaL and matE, to the virulence of Pseudomonas syringae pv. tomato DC3000 in tomato plants.

BackgroundThe phytohormone indole-3-acetic acid (IAA) is widely distributed among plant-associated bacteria. Certain strains of the Pseudomonas syringae complex can further metabolize IAA into a less biologically active amino acid conjugate, 3-indole-acetyl-ε-L-lysine, through the action of the iaaL gene. In P. syringae and Pseudomonas savastanoi strains, the iaaL gene is found in synteny with an upstream gene, here called matE, encoding a putative MATE family transporter. In P. syringae pv. tomato (Pto) DC3000, a pathogen of tomato and Arabidopsis plants, the HrpL sigma factor controls the expression of a suite of virulence-associated genes via binding to hrp box promoters, including that of the iaaL gene. However, the significance of HrpL activation of the iaaL gene in the virulence of Pto DC3000 is still unclear.ResultsA conserved hrp box motif is found upstream of the iaaL gene in the genomes of P. syringae strains. However, although the promoter region of matE is only conserved in genomospecies 3 of this bacterial group, we showed that this gene also belongs to the Pto DC3000 HrpL regulon. We also demonstrated that the iaaL gene is transcribed both independently and as part of an operon with matE in this pathogen. Deletion of either the iaaL or the matE gene resulted in reduced fitness and virulence of Pto DC3000 in tomato plants. In addition, we used multicolor fluorescence imaging to visualize the responses of tomato plants to wild-type Pto DC3000 and to its ΔmatE and ΔiaaL mutants. Activation of secondary metabolism prior to the development of visual symptoms was observed in tomato leaves after bacterial challenges with all strains. However, the observed changes were strongest in plants challenged by the wild-type strain, indicating lower activation of secondary metabolism in plants infected with the ΔmatE or ΔiaaL mutants.ConclusionsOur results provide new evidence for the roles of non-type III effector genes belonging to the Pto DC3000 HrpL regulon in virulence.Electronic supplementary materialThe online version of this article (doi:10.1186/s12866-015-0503-8) contains supplementary material, which is available to authorized users.

Visible-wavelength two-photon excitation microscopy for fluorescent protein imaging

The simultaneous observation of multiple fluorescent proteins (FPs) by optical microscopy is revealing mechanisms by which proteins and organelles control a variety of cellular functions. Here we show the use of visible-light based two-photon excitation for simultaneously imaging multiple FPs. We demonstrated that multiple fluorescent targets can be concurrently excited by the absorption of two photons from the visible wavelength range and can be applied in multicolor fluorescence imaging. The technique also allows simultaneous single-photon excitation to offer simultaneous excitation of FPs across the entire range of visible wavelengths from a single excitation source. The calculation of point spread functions shows that the visible-wavelength two-photon excitation provides the fundamental improvement of spatial resolution compared to conventional confocal microscopy.

Focus on lasers and imaging

Focus on lasers and imaging

Single Probe for Imaging and Biosensing of pH, Cu2+Ions, and pH/Cu2+in Live Cells with Ratiometric Fluorescence Signals

It is very essential to disentangle the complicated inter-relationship between pH and Cu in the signal transduction and homeostasis. To this end, reporters that can display distinct signals to pH and Cu are highly valuable. Unfortunately, there is still no report on the development of biosensors that can simultaneously respond to pH and Cu(2+), to the best of our knowledge. In this work, we developed a single fluorescent probe, AuNC@FITC@DEAC (AuNC, gold cluster; FITC, fluorescein isothiocyanate; DEAC, 7-diethylaminocoumarin-3-carboxylic acid), for biosensing of pH, Cu(2+), and pH/Cu(2+) with different ratiometric fluorescent signals. First, 2,2',2″-(2,2',2″-nitrilotris(ethane-2,1-diyl)tris((pyridin-2-yl-methyl)azanediyl))triethanethiol (TPAASH) was designed for specific recognition of Cu(2+), as well as for organic ligand to synthesize fluorescent AuNCs. Then, pH-sensitive molecule, FITC emitting at 518 nm, and inner reference molecule, DEAC with emission peak at 472 nm, were simultaneously conjugated on the surface of AuNCs emitting at 722 nm, thus, constructing a single fluorescent probe, AuNC@FITC@DEAC, to sensing pH, Cu(2+), and pH/Cu(2+) excited by 405 nm light. The developed probe exhibited high selectivity and accuracy for independent determination of pH and Cu(2+) against reactive oxygen species (ROS), other metal ions, amino acids, and even copper-containing proteins. The AuNC-based inorganic-organic probe with good cell-permeability and high biocompatibility was eventually applied in monitoring both pH and Cu(2+) and in understanding the interplaying roles of Cu(2+) and pH in live cells by ratiometric multicolor fluorescent imaging.

Optical Clearing Methods for Large Scale Studies of Renal Morphology

Due to the limited permeability of visible photons in tissue, renal morphology studies with sub-cellular resolution have been restricted to mechanical sectioning methods to reconstruct a global view of the kidney. Recent studies on brain tissue have introduced clearing methods that reduce the light scattering in tissue and increase the penetration depth of light. We applied a combination of the CLARITY and SeeDB clearing methods followed by fluorescent immunostaining to obtain optical 3D views of mm-scale rat kidney samples. Immunostaining was performed using antibodies against protein markers for podocytes (WT-1 and podocin), blood vessels (aminopeptidase P) and kindey tubules (E-cadherin). We performed multi-color fluorescence imaging of stained samples using confocal microscopy. In order to speed up the imaging process and also to some extent improve axial resolution we further applied one-color light sheet microscopy on cleared samples. Our results show that clearing methods combined with immunostaining is a fruitful tool in studying renal morphology and protein expression with a deep 3D perspective. We present 3D-renderings of cleared tissue using tubuli-, glomeruli- and blood vessel-specific markers. By comparing to non-cleared tissue, we show a substantial decrease in attenuation of light upon clearing, as well as an apparent increase in image quality as function of depth (See figure for cleared 1mm kidney slice). Our observations clearly indicate that light scattering effects in cleared tissue is reduced, which allows for imaging of samples at least an order of magnitude deeper than previously possible using confocal immunofluorescence microscopy at visible wavelengths.

Real-time imaging of mitochondrial hydrogen peroxide and pH fluctuations in living cells using a fluorescent nanosensor.

Mitochondrial reactive oxygen species (ROS) and pH fluctuations are closely correlated with mitochondrial dysfunctions, which are implicated in various human diseases including neurodegenerative disorders and cancers. Simultaneously monitoring the changes of ROS and pH of mitochondria remains a major challenge in the mitochondrial biology. In this study, we develop a novel mitochondria-targeted fluorescent nanosensor for real-time imaging of the fluctuations of hydrogen peroxide (H2O2) and pH in living cells. The fluorescence probes for detecting pH and H2O2 were loaded in the small-sized mesoporous silica nanoparticles (MSN). Then the polyethylenimine was attached to cap the pores of MSN, the triphenylphosphonium was further modified to target mitochondria in living cells. Confocal fluorescence imaging indicated that the nanosensor could effectively target mitochondria and successfully achieved real-time imaging of mitochondrial H2O2 and pH fluctuations in living cells. Notably, this is a single nanosensing system that is capable of visualizing multiple subcellular analytes at the same time and position by multicolor fluorescence imaging. The current approach can provide a promising tool to investigate the interplaying roles of various subcellular analytes in living cells.

Development of an Optically Transparent Silicon Based Technology Platform for Biological Analysis

A prototype optical structure suitable for advanced biological investigation has been successfully manufactured using plasma-enhanced chemical vapor deposition and deep reactive-ion etching techniques. Our approach to the design and fabrication of the structure is such that it can easily be integrated onto a lab-on-a-chip cell positioning platform, combining the use of integrated circuit technology with optimal in situ analysis of cells through the substrate using high-resolution inverted microscope systems. This paper describes the concept, design, fabrication, and optical characterization of a transparent window and corresponding via, which extends from the top surface to bottom surface of a silicon wafer. The effectiveness of the platform is demonstrated in multicolor fluorescence imaging of cells, cultured on-chip, using an inverted, confocal microscope.

Characterization of a new class of blue-fluorescent lipid droplet markers for live-cell imaging in plants.

The present work demonstrates the use and advantages of novel, live cell permeable, lipid droplet localizing, non toxic, blue fluorochromes for use in live plant cells. Lipid droplets (LDs) are ubiquitous components of both animal and plant cells. They consist of a core of neutral lipids surrounded by a monolayer of phospholipids, glycolipids and/or sterols with embedded amphipathic proteins. Although initially considered to be simple energy depots, they have recently emerged as organelles that serve important regulatory functions. Here we report three new fluorochromes as markers for LDs in plants. These bright blue fluorochromes with their unique spectral properties can easily be combined with other green and red fluorescent reporters for multicolor fluorescence imaging. The fluorochromes are non-toxic and photo-stable. All in all, they represent a reliable tool to use, for the investigation of dynamic LD biology within living plant cells using fluorescence microscopy.

Aptamer-conjugated graphene oxide membranes for highly efficient capture and accurate identification of multiple types of circulating tumor cells.

Tumor metastasis is responsible for 1 in 4 deaths in the United States. Though it has been well-documented over past two decades that circulating tumor cells (CTCs) in blood can be used as a biomarker for metastatic cancer, there are enormous challenges in capturing and identifying CTCs with sufficient sensitivity and specificity. Because of the heterogeneous expression of CTC markers, it is now well understood that a single CTC marker is insufficient to capture all CTCs from the blood. Driven by the clear need, this study reports for the first time highly efficient capture and accurate identification of multiple types of CTCs from infected blood using aptamer-modified porous graphene oxide membranes. The results demonstrate that dye-modified S6, A9, and YJ-1 aptamers attached to 20–40 μm porous garphene oxide membranes are capable of capturing multiple types of tumor cells (SKBR3 breast cancer cells, LNCaP prostate cancer cells, and SW-948 colon cancer cells) selectively and simultaneously from infected blood. Our result shows that the capture efficiency of graphene oxide membranes is ∼95% for multiple types of tumor cells; for each tumor concentration, 10 cells are present per milliliter of blood sample. The selectivity of our assay for capturing targeted tumor cells has been demonstrated using membranes without an antibody. Blood infected with different cells also has been used to demonstrate the targeted tumor cell capturing ability of aptamer-conjugated membranes. Our data also demonstrate that accurate analysis of multiple types of captured CTCs can be performed using multicolor fluorescence imaging. Aptamer-conjugated membranes reported here have good potential for the early diagnosis of diseases that are currently being detected by means of cell capture technologies.

2000-fold parallelized dual-color STED fluorescence nanoscopy.

Stimulated Emission Depletion (STED) nanoscopy enables multi-color fluorescence imaging at the nanometer scale. Its typical single-point scanning implementation can lead to long acquisition times. In order to unleash the full spatiotemporal resolution potential of STED nanoscopy, parallelized scanning is mandatory. Here we present a dual-color STED nanoscope utilizing two orthogonally crossed standing light waves as a fluorescence switch-off pattern, and providing a resolving power down to 30 nm. We demonstrate the imaging capabilities in a biological context for immunostained vimentin fibers in a circular field of view of 20 µm diameter at 2000-fold parallelization (i.e. 2000 "intensity minima"). The technical feasibility of massively parallelizing STED without significant compromises in resolution heralds video-rate STED nanoscopy of large fields of view, pending the availability of suitable high-speed detectors.

Locked-flavylium fluorescent dyes with tunable emission wavelengths based on intramolecular charge transfer for multi-color ratiometric fluorescence imaging.

A new class of locked-flavylium fluorophores with tunable emission wavelengths based on intramolecular charge transfer were designed, synthesized, and evaluated. The optical studies indicate that sensor LF3 can display an intriguing character, fluorescence ratiometric response in three channels by tuning the ICT efficiencies.

Live cell imaging of cytoskeletal and organelle dynamics in gravity-sensing cells in plant gravitropism.

Plants sense gravity and change their morphology/growth direction accordingly (gravitropism). The early process of gravitropism, gravity sensing, is supposed to be triggered by sedimentation of starch-filled plastids (amyloplasts) in statocytes such as root columella cells and shoot endodermal cells. For several decades, many scientists have focused on characterizing the role of the amyloplasts and observed their intracellular sedimentation in various plants. Recently, it has been discovered that the complex sedimentary movements of the amyloplasts are created not only by gravity but also by cytoskeletal/organelle dynamics, such as those of actin filaments and the vacuolar membrane. Thus, to understand how plants sense gravity, we need to analyze both amyloplast movements and their regulatory systems in statocytes. We have developed a vertical-stage confocal microscope that allows multicolor fluorescence imaging of amyloplasts, actin filaments and vacuolar membranes in vertically oriented plant tissues. We also developed a centrifuge microscope that allows bright-field imaging of amyloplasts during centrifugation. These microscope systems provide new insights into gravity-sensing mechanisms in Arabidopsis.

Advanced Multi-Color Fluorescence Imaging System for Detection of Biotic and Abiotic Stresses in Leaves

The autofluorescence of a sample is a highly sensitive and selective optical property and gives the possibility to establish non-destructive techniques of the investigation of plants, like detecting the chlorophyll fluorescence related to stress phenomena. In this study, an advanced multi-color fluorescence imaging system and data analysis were presented. The advantage of an imaging system is the additional receiving of spatial information over a sample area, this is a strong improvement compared to spot measurements commonly used. The purpose was to demonstrate the possibility of the detection and characterization of stress symptoms using this system. Specific fluorescence ratios were identified to characterize the stress status over the whole leaf, here shown on barley grown under different nitrogen supply (abiotic stress). Due to the changes, it is possible to make conclusions about leaf pigments (chlorophylls and phenolics) related to stress response. The second aim was to use the shape of local symptoms (biotic stress) as a criterion. For this purpose, three structural different kinds of fungal symptoms were analyzed using shape descriptors. It shows that an additional image shape analysis can be very useful for extracting further information, in this case the successful discrimination of fungal infections.

Microfluidic-Enabled Liposomes Elucidate Size-Dependent Transdermal Transport

Microfluidic synthesis of small and nearly-monodisperse liposomes is used to investigate the size-dependent passive transdermal transport of nanoscale lipid vesicles. While large liposomes with diameters above 105 nm are found to be excluded from deeper skin layers past the stratum corneum, the primary barrier to nanoparticle transport, liposomes with mean diameters between 31–41 nm exhibit significantly enhanced penetration. Furthermore, multicolor fluorescence imaging reveals that the smaller liposomes pass rapidly through the stratum corneum without vesicle rupture. These findings reveal that nanoscale liposomes with well-controlled size and minimal size variance are excellent vehicles for transdermal delivery of functional nanoparticle drugs.

Multi-color fluorescence imaging based on plasmonic wavelength selection and double illumination by white light

We demonstrate the proof-of-concept for developing a multi-color fluorescence imaging system based on plasmonic wavelength selection and double illumination by white light source. This technique is associated with fluorescence excitation by transmitted light via a diffraction of propagating surface plasmons. Since double illumination through both sides of isosceles triangle prism in the Kretschmann configuration enables multiple transmission beams of different wavelengths to interact with the specimen, our approach can be an alternative to conventional fluorescence detection owing to alignment stability and functional expandability. After fabricating a plasmonic wavelength splitter and integrating it with microscopic imaging system, we successfully confirm the performance by visualizing in vitro neuron cells labeled with green and red fluorescence dyes. The suggested method has a potential that it could be combined with plasmonic biosensor scheme to realize a multi-functional platform which allows imaging and sensing of biological samples at the same time.