Microcystins (MCs) pose a significant threat to human health and the environment due to their persistence and toxicity as potent cyanobacterial toxins. Effective biodegradation strategies are required for their removal and detoxification. In this study, bacterioplankton were isolated from eutrophic reservoir water used for crop irrigation and tested for their ability to degrade MCs. These bacteria are hydrologically transported from the contaminated reservoir to downstream farms where they are able to grow under the favorable conditions provided by a multi-soil-layering (MSL) system, a low-cost and locally applicable ecotechnology for the removal and detoxification of MCs. These bacteria enhance the ability of the MSL to remove MCs by forming biofilms within the MSL system. The bacterial strains were then sequenced and their partial 16S rRNA was compared to the reference strains in the NCBI database. The effectiveness of the MSL system in the removal of MCs from water was evaluated. The MSL utilizes a layered soil matrix that promotes microbial growth and physicochemical interactions that enable the removal of various contaminants. The mechanisms of MC removal in the MSL were evaluated by studying the physicochemical properties of the system substrate before and after treatment using X-ray fluorescence, zeta potential, and scanning electron microscopy (SEM) analyses. The microbial functional groups, including ammonifying and denitrifying bacteria, were also investigated in the MSL soil matrices before and after treatment. The results showed that seven bacterial strains exhibited high MC degradation capabilities, with MC degradation performance exceeding 97%. These isolated bacterial strains had a nucleotide identity score of 100% and an E value of 0.0 compared to reference strains. The MSL showed a 99% removal rate for MC-LR and MC-YR, as well as significant reductions in other pollutants, including COD (60%), BOD5 (60%), chlorophyll-a (96%), pheophytin (70%), organic nitrogen (80%), and nitrites (90%). After treatment, there was a statistically significant increase in the total bacterial count, as well as ammonifying and denitrifying bacteria, in the MSL soil matrices compared to their state before treatment. SEM analyses revealed the formation of dense biofilm microbiota, indicating additional biological processes besides adsorption for MC reduction. Overall, the MSL provides a low-cost alternative for the removal of MCs and cyanobacteria with minimal resource requirements and maintenance. It offers a promising solution for mitigating toxic cyanobacterial blooms, ensuring safe agricultural water reuse.
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