Multilocus Phylogenetic Analysis Research Articles

First Report of Neofusicoccum parvum Causing Seedpod Blight on Lotus (Nelumbo nucifera) in China.

Lotus (Nelumbo nucifera Gaertn.) is a widely cultivated plant in China, and the fruit lotus variety has a high economic value attributed to the exquisite flavor of its fresh seeds. During the summer of 2023, an unidentified blight was observed affecting lotus seedpods in Jiande City, Zhejiang province, with approximately 65% of seedpods impacted in a 130-hectare area. The initial symptoms included dark purple spots on the lotus seedpod surface, which gradually expanded over time. After 5 to 7 days, the entire seedpod turned black, withering, and rendering the lotus seeds inedible. To identify the causal agent, tissues from symptomatic seedpods were excised and disinfected in 75% ethanol for 60 s, and washed twice in sterile distilled water. The disinfected symptomatic tissues (5 × 5 mm) were plated on potato dextrose agar (PDA), incubated at 25 ℃, transferred hyphal tips to obtain pure isolates after 3 days. Fungal colonies exhibiting Botryosphaeriaceae morphology were isolated from 33% of the samples (n = 15). Pure cultures were grown on PDA for both morphological and molecular identification. The colonies displayed a white aerial mycelium, turning olivaceous grey after 7 days. Pycnidia were produced within 3 weeks on PDA with added sterilized healthy lotus seedpod pieces on the surface. Conidia were hyaline, unicellular, ellipsoidal, 12.65 to 20.72 × 3.92 to 9.38 μm in size (mean 16.67 × 6.24 μm, n = 100). To determine the fungal species, genomic DNA was extracted from one representative isolate (ZJUP1112-1), to amplify four gene loci through polymerase chain reactions (PCR): rDNA internal transcribed spacer (ITS) with primers ITS1/ITS4, rDNA large subunit (LSU) with LR0R/LR5, the translation elongation factor 1-alpha gene (tef1) with EF1-728F/EF1-986R, and β-tubulin gene (tub2) with Bt2a/Bt2b. The PCR products were Sanger sequenced in Zhejiang Shangya biotechnology co., LTD, and the resulting sequences were assembled and deposited in GenBank (ITS: OR740546; LSU: OR740547; tef1: OR776996; tub2: OR776997). BLAST searches indicated the highest nucleotide sequence identity with the reference strains of Neofusicoccum parvum CMW 9081 (ITS: 98.8%, AY236943; LSU: 100%, AY928045; tef1: 99.6%, AY236888; tub2: 99.3%, AY236917). Multi-locus phylogenetic analyses revealed that isolate ZJUP1112-1 formed a highly supported clade with N. parvum. Pathogenicity tests were performed on healthy lotus seedpods using mycelial plugs (5 mm diameter) from actively growing colonies of ZJUP1112-1 that were placed onto the front and side of the seedpods (6 each). Controls received PDA plugs. Treated seedpods were wrapped with parafilm and incubated at 25 ℃ and the experiment was repeated three times. After 5 days, dark purple lesions were observed on the inoculated seedpods, whereas controls remained symptomless. The same isolate was recovered from the margin of resulting lesions and confirmed by morphology, thus fulfilling Koch's postulates. N. parvum is a polyphagous pathogen causing blights and fruit rot on multiple economically important fruit crops, such as cacao (Puig et al. 2019), walnut (Chen et al. 2019), pistachio (Lopez-Moral et al. 2020), chestnut (Seddaiu et al. 2021), blueberry (Spetik et al. 2023) and mango (Polizzi et al. 2022), among others. To the best of our knowledge, this is the first report of N. parvum causing seedpod blight on lotus seedpods in China, which contributes to a better understanding of the pathogens affecting this plant species in China.

Lappodochium lageniforme transferred to Botryoderma, with validation of the name Botryoderma rostratum (Chaetomiaceae, Sordariales)

The phylogenetic position and taxonomic status of the monotypic genus Lappodochium Matsush. and its constituent species Lappodochium lageniforme Matsush. have long been uncertain. A multilocus phylogenetic analysis of combined ITS, LSU, rpb2 and tub2 datasets and morphological data were used to establish relationships of Lappodochium lageniforme within the Chaetomiaceae. Phylogenetic analyses revealed a strongly supported monophyletic clade of Lappodochium lageniforme with Botryoderma strains. These results provide sufficient data to re-examine the phylogenetic position of Lappodochium and propose the new combination Botryoderma lageniforme (Matsush.) Gusmão, G.G.Barreto & M.G.A.Primo. The previously invalidly published B. rostratum is also validated, as B. rostratum Papendorf & H.P.Upadhyay ex Gusmão & G.G.Barreto. We also provide a key and synopsis of all accepted Botryoderma species.

Diversity of culturable fungi in six Tibetan Plateau lakes, with descriptions of eight new taxa

ABSTRACT The combination of low temperatures, oligotrophic conditions, high altitude, and varying salinity in Tibetan Plateau lakes endows them with a wealth of distinctive fungal resources. This study aimed to investigate the diversity of culturable fungi in sediment and water samples collected from six lakes located on the Tibetan Plateau at elevations above 4,500 m. A total of 843 fungal strains were isolated by dilution plate method using four different media. Initial ITS analyses revealed that they belong to 156 species across 83 genera, spanning 50 families, 26 orders, 12 classes, and 6 phyla. Further morphological and multi-locus phylogenetic analyses were conducted, resulting in the formal descriptions of a new genus, Xizangia, and seven new species, including Alternaria xizangensis, Emericellopsis ovoidea, Myceliophthora xizangica, Preussia cylindricalis, Preussia sedimenticola, Pseudeurotium sedimenticola, and Xizangia sedimenticola. This research provides insights into the biodiversity of culturable fungi in the unique and extreme ecosystem, shedding light on the potential discovery of novel species and genera.

Shoot blight of Pinus bungeana caused by Diplodia sapinea newly reported in China

Pinus bungeana is a rare and endangered plant in China with high ornamental value. In September 2022, P. bungeana shoot blight was discovered in Changzhou, Jiangsu, China. This disease led to the chlorosis, withering and death of the stems and needles of shoot tips of the host. It seriously affected the growth of plants. The fungus was identified to be Diplodia sapinea, based on morphological characteristics and multilocus phylogenetic analyses of ITS region (the internal transcribed spacer) and EF gene (elongation factor 1-alpha). The pathogenicity test was carried out by inoculating the tips of the shoots using conidial suspension, and the Koch's postulates were confirmed. This is the first report of P. bungeana blight caused by D. sapinea in the world.

Ascochyta erotica sp. nov. Pathogenic on Convolvulus arvensis

Convolvulus arvensis is an herbaceous dicotyledonous plant in the Convolvulaceae family that is native to Europe and Asia. It is a perennial soboliferous plant and is one of the most harmful weeds. This weed is successful in many types of climates, including temperate, tropical, and Mediterranean climates, but it is most troublesome for agriculture throughout the temperate zone. In this study, several pathogenic isolates were collected from this host. The internal transcribed spacer (ITS) and large subunit (28S) or ribosomal DNA, partial DNA-directed RNA polymerase II subunit (rpb2), and β-tubulin (tub2) genes were amplified and sequenced for all the isolates studied. Further, both a multilocus phylogenetic analysis of DNA sequences and an analysis of morphological features were implemented. Based on the results obtained, all the studied isolates were found to be distinct from any described species in the genus Ascochyta and are, therefore, described here as a new species Ascochyta erotica sp. nov. The pathogenicity of A. erotica sp. nov. was also tested and confirmed on leaf segments of C. arvensis.

Paramphibambusabambusicola gen. et. sp. nov., Arecophilaxishuangbannaensis and A.zhaotongensis spp. nov. in Cainiaceae from Yunnan, China.

Morphological comparisons and multi locus phylogenetic analyses (base on the combined genes of ITS, LSU, rpb2 and tub) demonstrated that three new saprobic taxa isolated from bamboo belong to Cainiaceae. These taxa comprise a novel genus Paramphibambusa (P.bambusicolasp. nov.) and two new species, Arecophilaxishuangbannaensis and A.zhaotongensis. The three new taxa belong to Cainiaceae (Xylariales, Sordariomycetes) a poorly studied family, which now comprises eight genera. Paramphibambusa can be distinguished from other Cainiaceae genera in having ascomata with a neck and ascospores lacking longitudinal striation, germ slits or germ pores. The two new Arecophila species clustered in a clade with Arecophila sp. and A.bambusae. Detailed morphological descriptions, illustrations, and an updated phylogenetic tree are provided for the new taxa.

First report of Pythium aphanidermatum and Pythium myriotylum causing root rot on chili pepper (Capsicum annuum L.) in Guizhou, China

Chili peppers (Capsicum annuum L.) are popular globally as a vegetable and condiment and are particularly popular in Guizhou, China. Root rot, the most prevalent soil-borne disease affecting chili peppers, is widespread in Guizhou. In 2023, it was observed in 10–20% of six fields, leading to significant economic losses. Eight strains were isolated from rotten roots of ‘Huaxi’ chili samples to support the need for appropriate pathogen control. Four strains were identified as Pythium aphanidermatum (strains: HSLJ-2, HSLJ-4) and Pythium myriotylum (strains: LDLJY-1, LDLJJ-3) through morphological analysis of sporangia, oospores, antheridia, and oogonia; multi-locus phylogenetic analysis of the internal transcribed spacer and mitochondrial cytochrome c oxidase subunit 1 gene regions; followed by pathogenicity testing using inoculated autoclaved wheat seeds. The two Pythium species were thus identified as novel causal agents of chili pepper root rot in Guizhou, China.

Phaeoacremonium philippinense (Togniniales, Sordariomycetes), a novel freshwater fungus from the Philippines

An investigation of freshwater fungi in the Philippines resulted in the collection and isolation of a new species of Phaeoacremonium (Togniniaceae) from unidentified decayed submerged wood. The novel hyphomycetous species, Phaeoacremonium philippinense, shares the same morphology with other members of the genus, such as having short, usually unbranched conidiophores, the presence of three types of phialides, and oblong-ellipsoidal to oblong conidia. A multi-locus phylogenetic analysis of the combined ITS-tub2-act-tef1-α-LSU dataset placed P. philippinense as a sister taxon to P. thailandense and indicated a shared clade with P. sicilianum. Detailed descriptions and photographic illustrations of P. philippinense are provided.

Endophytic species of Colletotrichum associated with cashew tree in northeastern Brazil

Anthracnose caused by Colletotrichum is the most severe and widely occurring cashew disease in Brazil. Colletotrichum species are commonly found as pathogens, endophytes and occasionally as saprophytes in a wide range of hosts. The endophytic species associated with cashew trees are poorly studied. In this study, we report the Colletotrichum endophytic species associated with cashew trees in two locations in the state of Pernambuco, their prevalence in different plant organs (leaves, veins, branches and inflorescences), and compare the species in terms of pathogenicity and aggressiveness using different inoculation methods (wounded × unwounded). Six species of Colletotrichum were identified according to multilocus phylogenetic analyses, including Colletotrichum asianum, Colletotrichum chrysophilum, Colletotrichum karsti, Colletotrichum siamense, Colletotrichum theobromicola, and Colletotrichum tropicale. There were differences in the percentage of isolation in relation to the prevalence of colonized tissues and collection locations. C. tropicale was the prevalent species in both geographic areas and plant tissues collected, with no pattern of distribution of species between areas and plant tissues. All isolates were pathogenic in injured tissues of cashew plants. The best method to test the pathogenicity of Colletotrichum species was utilizing the combination of leaves + presence of wounds + conidial suspension, as it better represents the natural infection process. C. siamense was the most aggressive species.

Molecular Characterization and Pathogenicity of Diaporthe Species Causing Nut Rot of Hazelnut in Italy.

Hazelnut (Corylus avellana), a nut crop that is rapidly expanding worldwide, is endangered by a rot. Nut rot results in hazelnut defects. A survey was conducted in northwestern Italy during 2020 and 2021 to identify the causal agents of hazelnut rots. Typical symptoms of black rot, mold, and necrotic spots were observed on hazelnuts. The prevalent fungi isolated from symptomatic hazelnut kernels were Diaporthe spp. (38%), Botryosphaeria dothidea (26%), Diplodia seriata (14%), and other fungal genera with less frequent occurrences. Among 161 isolated Diaporthe spp., 40 were selected for further analysis. Based on morphological characterization and multilocus phylogenetic analysis of the ITS, tef-1α, and tub2, seven Diaporthe species were identified as D. eres, D. foeniculina, D. novem, D. oncostoma, D. ravennica, D. rudis, and D. sojae. D. eres was the main species isolated from hazelnut rots, in particular from moldy nuts. The pathogenicity test performed on hazelnuts 'Tonda Gentile del Piemonte' using a mycelium plug showed that all the Diaporthe isolates were pathogenic on their original host. To our knowledge, this work is the first report of D. novem, D. oncostoma, and D. ravennica on hazelnuts worldwide. D. foeniculina, D. rudis, and D. sojae were reported for the first time as agents of hazelnut rot in Italy. Future studies should focus on the comprehension of epidemiology and climatic conditions favoring the development of Diaporthe spp. on hazelnut. Prevention and control measures should target D. eres, representing the main causal agents responsible for defects and nut rot of hazelnuts in Italy.

In vitro Culture and Multilocus Genotyping of Giardia duodenalis Trophozoites Obtained from Human Fecal Samples in Southwest Iran.

The enteric protozoa, Giardia duodenalis (G. duodenalis), consists of eight distinct assemblages (A-H) with identical morphological characteristics and a direct life cycle. Successful axenic cultivation of this parasite is an important preliminary step for biological, drug resistance and phylogenetic studies. Moreover, G. duodenalis exhibits great genetic and biotypic diversity. The current study aimed to evaluate In vitro culture and multilocus genotyping of G. duodenalis trophozoites obtained from human fecal samples in southwest Iran. Thirty human fecal specimens containing G. duodenalis cysts were collected from Ahvaz city (southwest of Iran). The purification of cysts was carried out by the sucrose flotation technique. The cysts were inoculated in a modified TYI-S-33 medium and was daily monitored for the development and viability of trophozoites. After extracting DNA, gdh, bg and tpi genes were evaluated using molecular techniques (the semi-nested PCR for gdh gene and the nested PCR for tpi and bg genes). Eventually, the amplified fragments were sequenced and then, the phylogenetic tree was drawn. Of 30, the trophozoites were encysted from five samples. All three genes were detected in two cases of five samples using molecular techniques. The multilocus phylogenetic analysis demonstrated that all the two samples belonged to assemblage A and sub-assemblage AІІ. Our findings indicated the presence of different numbers of trophozoites with variable development and survival rates in modified TYI-S-33 medium. Furthermore, the multilocus genotyping showed that these trophozoites belonged to assemblage A and sub-assemblage AІІ.

First Report of Colletotrichum siamense Causing Fruit Anthracnose on Pomegranate (Punica granatum) in China.

As a native crop in central Asia, pomegranate (Punica granatum L.) has been cultivated in China for more than 2000 years (Yuan et al. 2007). In August 2022, typical symptoms of anthracnose were observed on pomegranate fruitlets in the main cultivation area (34°22'36″N, 109°15'58″E) in Shaanxi Province, China. The disease incidence was approximately 10 to 15% in the field. The initial symptoms were slightly small, light, dark, sunken lesions with irregular, circular shapes. As the disease progressed, the necrotic lesions gradually expanded and merged, eventually leading to the abscission of fruits (Figure 1, A). The symptomatic lesion samples of the pomegranate were sterilized for 1.5 min in 75% ethanol and 2 min in 1% NaClO and rinsed for 2 min in sterile water three times. The sterilized samples were dried on sterile filter paper and placed on potato dextrose agar (PDA) media at 25 ℃ for 5 days. The mycelia of the isolate were white, cottony, and diffuse (Figure 1, B and C). The conidia were single-celled, smooth, aseptate, and cylindrical with slightly rounded ends, measured 13.5 to 17.5 μm long and 3.5 to 6.5 μm wide (mean 16.0 × 4.5 μm, n = 50) (Figure 1, D). These morphological characteristics were identical to those of Colletotrichum siamense (Weir et al. 2012; Cannon et al. 2012; Zhuo et al. 2022). For accurate molecular characterization of the fungus, genomic DNA was extracted from the hyphae of the two isolates using microorganism lysis buffer (Takara, Japan). The internal transcribed spacer (ITS), calmodulin (CAL), actin (ACT), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and beta-tubulin (TUB2) regions were amplified and sequenced. All the sequences were submitted to GenBank with accession numbers OQ832556 (ITS), OQ848589 (GAPDH), OQ848590 (ACT), OQ848591 (CAL), and OQ986593 (TUB2). The isolates showed 99 to 100% identity with sequences of Colletotrichum siamense (100% with GAPDH, ACT, CAL, and TUB2; 99.81% with ITS). The morphology of the strain was studied, and multilocus (ITS, GAPDH, ACT, CAL, and TUB2) phylogenetic analysis was performed (Figure 2). Therefore, the causal pathogen was identified as C. siamense based on the results of morphological and molecular analyses. Pathogenicity assays were performed on pomegranate (cv. Lishanhong) fruits. A conidial suspension (1×106 conidia/mL) was sprayed onto 10 unwounded fruits to inoculate them as infected samples, and the controls were inoculated with a sterile water suspension. All the samples were maintained in an artificial climate box at 25 ± 2 ℃ with 70% relative humidity, and the photoperiod was set as 12:12 light:dark. After 5 to 7 days, anthracnose symptoms developed on the surface of the inoculated fruit, whereas the control fruits remained healthy. The diseased fruits exhibited brown necrotic lesions, whereas the upper surfaces of the control fruits remained asymptomatic. The morphological and molecular characteristics of the reisolated pathogen were identical to those of the original fungus isolated from the natural fruit. C. siamense has been reported to cause anthracnose in the southeastern United States (Xavier et al. 2019). The pathogen causing anthracnose on pomegranates has been reported to be Colletotrichum fructicola in China (Hu et al. 2023). To our knowledge, this is the first report of anthracnose on pomegranate fruits caused by C. siamense in China. This disease can directly affect the quality and yield of the fruit. Thus, information about the characteristics of this disease could provide a theoretical basis for its prevention and control.

Unravelling Species Diversity and Pathogenicity of Fusarium spp. Associated with Soybean Leaf and Root in Heilongjiang Province, China.

Soybean (Glycine max L.) holds significant global importance and is extensively cultivated in Heilongjiang Province, China. Soybean can be infected by Fusarium species, causing root rot, seed decay, stem rot, and leaf blight. In 2021 to 2022, a field survey of soybean diseases was carried out in 11 regions of Heilongjiang Province, and 186 soybean leaves with leaf blight symptoms and 123 soybean roots with root rot symptoms were collected. Unexpectedly, a considerable number of Fusarium isolates were obtained not only from root samples but also from leaf samples. A total of 584 Fusarium isolates (416 from leaves and 168 from roots) were obtained and identified as 18 Fusarium species based on morphological features and multilocus phylogenetic analyses with tef1 and rpb2 sequences. Fusarium graminearum and Fusarium sp. 1 in FOSC were the dominant species within soybean leaf and root samples, respectively. Pathogenicity tests were conducted for all Fusarium isolates on both soybean leaves and roots. Results showed that F. graminearum, F. ipomoeae, F. citri, F. compactum, F. flagelliforme, F. acuminatum, and F. sporotrichioides were pathogenic to both soybean leaves and roots. F. solani, F. avenaceum, F. pentaseptatum, F. serpentinum, F. annulatum, and Fusarium sp. 1 in FOSC were pathogenic to soybean roots, not to leaves. To our knowledge, this is the first study to thoroughly investigate soybean-associated Fusarium populations in leaves and roots in Heilongjiang Province.

Pestalotiopsis jiangsuensis sp. nov. Causing Needle Blight on Pinus massoniana in China.

Pinus massoniana Lamb. is an important, common afforestation and timber tree species in China. Species of Pestalotiopsis are well-known pathogens of needle blight. In this study, the five representative strains were isolated from needle blight from needles of Pi. massoniana in Nanjing, Jiangsu, China. Based on multi-locus phylogenetic analyses of the three genomic loci (ITS, TEF1, and TUB2), in conjunction with morphological characteristics, a new species, namely Pestalotiopsis jiangsuensis sp. nov., was described and reported. Pathogenicity tests revealed that the five representative strains of the species described above were pathogenic to Pi. massoniana. The study revealed the diversity of pathogenic species of needle blight on Pi. massoniana. This is the first report of needle blight caused by P. jiangsuensis on Pi. massoniana in China and worldwide. This provides useful information for future research on management strategies of this disease.

On some tropical hydroids (Cnidaria: Hydrozoa), with descriptions of four new species

The present study provides a morphological account of six tropical hydroids, of which four are described as new. Halecium turbinariae sp. nov. grows exclusively on brown algae of the genus Turbinaria (Phaeophyceae: Fucales), and contains numerous zooxanthellae in its coenosarc. Nemalecium caeruleus sp. nov. occurs in a peculiar ecological niche, viz. the crevices of scleractinian corals, and is distinguished from its congeners by its sympodial mode of branching and an original, bluish-fluorescent sheen of its polyps. Antennella flava sp. nov. belongs to the A. secundaria (Gmelin, 1791) species group, but its tissues are abundantly filled with zooxanthellae, conferring it a striking yellow coloration. Macrorhynchia fallax sp. nov. imitates the fine morphology of M. philippina Kirchenpauer, 1872, although live specimens lack the characteristic irisation of the cladia met with in the latter. The peculiar, decapod crab-associated Corymorpha balssi Stechow, 1932, so far only known from the original account, is rediscovered and redescribed based on its hydroid stage and the ready-to-detach medusae. According to the morphological features of the latter, C. bitungensis (Xu, Huang & Guo, 2013), and possibly C. juliephillipsi (Gershwin et al., 2010), are considered the mature medusa stages of the same species, and are regarded as potential junior synonyms. The controversial synonymy of Tridentata borneensis (Billard, 1925) is addressed based on the examination of new material and its comparison with part of the type series, supplemented by the reinspection of the types of several nominal species subjectively assigned earlier to its synonymy. The distinctive sculpture of the hydrothecal wall leaves little doubt that it has a recent junior synonym, viz. Sertularia vervoorti Migotto & Calder, 1998, syn. nov. Conversely, the following taxa are removed from its synonymy upon the reevaluation of their taxonomic statuses: 1) Thuiaria maldivensis Borradaile, 1905 is a valid species that has a junior synonym, namely Pasythea heterodonta Jarvis, 1922 (now Dynamena), syn. nov., the former being henceforth referred to as Dynamena maldivensis (Borradaile, 1905), comb. nov., on the account of its polyps lacking an abcauline caecum; 2) Tridentata westindica Stechow, 1919, syn. nov., is a junior synonym of Tridentata turbinata (Lamouroux, 1816); 3) Sertularia tongensis Stechow, 1919 is a valid species that has a recent junior synonym, viz. Sertularia orthogonalis Gibbons & Ryland (1989), syn. nov.; 4) Sertularia tumida Allman, 1877, whose type is reportedly lost, is removed from the synonymy of Billard’s (1925a) species, on the account on its much longer internodes; 5) Sertularia malayensis var. sorongensis Leloup, 1930 remains a subjective junior synonym; 6) also reexamined was type material of the little-known, not formerly illustrated Tridentata occulta Stechow, 1926, syn. nov. of Amphisbetia distans (Lamouroux, 1816). Additionally, we provide single- (16S rRNA or COI) and multi-locus (16S, 18S and 28S rRNA) phylogenetic analyses for many families of athecate and thecate hydroids, including at least 57 species from Bali, with 25 nominal species characterized genetically for the first time. Halecium halecinum var. minor Pictet, 1893 is raised to species, as H. minor Pictet, 1893, nov. status, on both morphological and molecular grounds. Campanularia spinulosa Bale, 1888 is assigned to the genus Obelia Péron & Lesueur, 1810, as O. spinulosa (Bale, 1888), based on its genetic affinities.

Identification and Pathogenicity of Fusarium Fungi Associated with Dry Rot of Potato Tubers.

Dry rot of potato tubers is a harmful disease caused by species of the Fusarium genus. Studies on the composition and features of Fusarium spp. that cause the disease in Russia are limited. Thirty-one Fusarium strains belonging to the F. sambucinum species complex (FSAMSC) and F. solani species complex (FSSC) were accurately identified using multilocus phylogenetic analysis of the tef and rpb2 loci, and their physiological characteristics were studied in detail. As a result, 21 strains of F. sambucinum s. str. and 1 strain of F. venenatum within the FSAMSC were identified. Among the analyzed strains within the FSSC, one strain of F. mori, four strains of F. noneumartii, and two strains of both F. stercicola and F. vanettenii species were identified. This is the first record of F. mori on potato as a novel host plant, and the first detection of F. noneumartii and F. stercicola species in Russia. The clear optimal temperature for the growth of the strains belonging to FSAMSC was noted to be 25 °C, with a growth rate of 11.6-15.0 mm/day, whereas, for the strains belonging to FSSC, the optimal temperature range was between 25 and 30 °C, with a growth rate of 5.5-14.1 mm/day. The distinctive ability of F. sambucinum strains to grow at 5 °C has been demonstrated. All analyzed Fusarium strains were pathogenic to potato cv. Gala and caused extensive damage of the tuber tissue at an incubation temperature of 23 °C for one month. Among the fungi belonging to the FSAMSC, the F. sambucinum strains were more aggressive and caused 23.9 ± 2.2 mm of necrosis in the tubers on average compared to the F. venenatum strain-17.7 ± 1.2 mm. Among the fungi belonging to the FSSC, the F. noneumartii strains were the most aggressive and caused 32.2 ± 0.8 mm of necrosis on average. The aggressiveness of the F. mori, F. stercicola, and especially the F. vanettenii strains was significantly lower: the average sizes of damage were 17.5 ± 0.5 mm, 17.2 ± 0.2 mm, and 12.5 ± 1.7 mm, respectively. At an incubation temperature of 5 °C, only the F. sambucinum strains caused tuber necroses in the range of 6.7 ± 0.5-15.9 ± 0.8 mm.

Amphichorda monjolensissp. nov., a new fungal species isolated from a Brazilian limestone cave, with an update on acremonium-like species in Bionectriaceae.

Caves are unique environments characterized by spatial limitations, partial or total absence of direct light, and scarcity of organic carbon and nutrients. Caves are shelters for a variety of adapted animals and microorganisms such as fungi, many of which are still unknown. Amphichorda is a fungal genus belonging to the family Bionectriaceae, which includes cave-dwelling and entomopathogenic species with biotechnological applications. In this study, a new fungal species was identified using morphological and multi-locus phylogenetic analyses of the ITS, LSU, and TEF loci, in the Gruta Velha Nova limestone cave located in the Southern Espinhaço Range, Monjolos, Minas Gerais, Brazil. During the exposure of potato dextrose agar plates to the cave environment, an insect from the family Rhaphidophoridae passed by and fed on the culture medium, resulting in three fungal isolates. Phylogenetic analyses showed that these isolates formed a clade distinct from all known species, leading us to introduce a new species, Amphichorda monjolensis, which may be associated with this insect. Here, we also proposed two new combinations for species of acremonium-like fungi in the Bionectriaceae: Bulbithecium globosisporum (synonym: Acremonium globosisporum) and Hapsidospora curva (synonym: Acremonium curvum). The discovery of A. monjolensis highlights the potential of caves as shelters for new species with significant biotechnological importance.

First report of Colletotrichum siamense causing leaf spot on silver date palm in China

Silver date palm (Phoenix sylvestris Roxb.) is an important ornamental plant in southern China. In October 2021, a serious anthracnose-like leaf spot of silver date palm was observed at a park in Haikou City, China. Some brown spots with yellow halos around the lesions appeared on the middle and lower leaves of the tree crown. The disease incidence reached 100% of trees and 32.8% of leaves. The pathogen was identified as Colletotrichum siamense by morphological characters, pathogenicity tests and multi-locus phylogenetic analyses combined with ITS, gapdh, tub2, cal and ApMat sequences. This is the first report of C. siamense causing the leaf spot of silver date palm in China.

Genetic insights of antibiotic resistance, pathogenicity (virulence) and phylogenetic relationship of Escherichia coli strains isolated from livestock, poultry and their handlers - a one health snapshot.

Pathogenic and non-pathogenic strains of Escherichia coli harbouring antibiotic resistance genes (ARGs) from any source (clinical samples, animal settings, or environment) might be transmitted and contribute to the spread and increase of antibiotic resistance in the biosphere. The goal of this study was to investigate the genome to decipher the repertoire of ARGs, virulence genes carried by E. coli strains isolated from livestock, poultry, and their handlers (humans), and then unveil the genetic relatedness between the strains. Whole genome sequencing was done to investigate the genetic makeup of E. coli isolates (n = 20) [swine (n = 2), cattle (n = 2), sheep (n = 4), poultry (n = 7), and animal handlers (n = 5)] from southern India. The detection of resistome, virulome, biofilm forming genes, mobile genetic elements (MGE), followed by multilocus sequence typing (MLST)and phylogenetic analyses, were performed. E. coli strains were found to be multi drug resistant, with a resistome encompassing > 20 ARGs, the virulome-17-22 genes, and > 20 key biofilm genes. MGE analysis showed four E. coli isolates (host: poultry, swine and cattle) harbouring composite transposons with ARGs/virulence genes (blaTEM, dfr, qnr/nleB, tir, eae,and esp) with the potential for horizontal transfer. MLST analyses revealed the presence of ST937 and ST3107 in both livestock/poultry and their handlers. Phylogenomic analyses with global E. coli isolates (human/livestock/poultry hosts) showed close relatedness with strains originating from different parts of the world (the United States, China, etc.). The current study emphasizes the circulation of strains of pathogenic sequence types of clinical importance, carrying a diverse repertoire of genes associated with antibiotic resistance, biofilm formation and virulence properties in animal settings, necessitating immediate mitigation measures to reduce the risk of spread across the biosphere.

Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China

Berchemia polyphylla var. leioclada is an important traditional Chinese medicinal plant, it has been proved to produces a variety of unique metabolites, such as glycosides, quinones, lignans, terpenes and flavonoids, with different bioactivities including antioxidant, anti-tumor, anti-diarrheal, anti-inflammatory, analgesic and antibacterial activities. Studies showed that endophytic fungi may secrete compounds that are similar to those of the host. Thus, the endophytic fungi of medicinal plants are important medicinal resources and are beneficial to the research and development of natural medicines. Therefore, studying the diversity of endophytic fungi in the medicinal plant of Berchemia polyphylla var. leioclada is of great significance to discovering new drugs. However, the endophytic fungi in Berchemia polyphylla var. leioclada have been poorly studied. This study investigates the endophytic fungi in Berchemia polyphylla var. leioclada from Guizhou Province, China. Two new species Diaporthe berchemiae and Colletotrichum berchemiae are introduced based on morphological characters and multi-locus phylogenetic analysis. This is the first report of endophytic fungi in the medicinal plant Berchemia polyphylla var. leioclada, which enhances our understanding of the endophytic fungi in the medicinal plant Berchemia polyphylla var. leioclada.