Multichannel Local Field Potentials Research Articles

Dynamic temporal neural patterns based on multichannel LFPs Identify different brain states during anesthesia in pigeons: comparison of three anesthetics.

Anesthetic-induced brain activity study is crucial in avian cognitive-, consciousness-, and sleep-related research. However, the neurobiological mechanisms underlying the generation of brain rhythms and specific connectivity of birds during anesthesia are poorly understood. Although different kinds of anesthetics can be used to induce an anesthesia state, a comparison study of these drugs focusing on the neural pattern evolution during anesthesia is lacking. Here, we recorded local field potentials(LFPs) using a multi-channel micro-electrode array inserted into the nidopallium caudolateral (NCL) of adult pigeons (Columba livia) anesthetized with chloral hydrate, pelltobarbitalum natricum or urethane. Power spectral density (PSD) and functional connectivity analyses were used to measure the dynamic temporal neural patterns in NCL during anesthesia. Neural decoding analysis was adopted to calculate the probability of the pigeon's brain state and the kind of injected anesthetic. In the NCL during anesthesia, we found elevated power activity and functional connectivity at low-frequency bands and depressed power activity and connectivity at high-frequency bands. Decoding results based on the spectral and functional connectivity features indicated that the pigeon's brain states during anesthesia and the injected anesthetics can be effectively decoded. These findings provide an important foundation for future investigations on how different anesthetics induce the generation of specific neural patterns.

Whole-Brain Electrophysiology in Drosophila during Sleep and Wake.

Sleep studies in Drosophila melanogaster rely mostly on behavioral read-outs to support molecular or circuit-level investigations in this model. Electrophysiology can provide an additional level of understanding in these studies to, for example, investigate changes in brain activity associated with sleep manipulations. In this protocol, we describe a procedure for performing multichannel local field potential (LFP) recordings in the fruit fly, with a flexible system that can be adapted to different experimental paradigms and situations. The approach uses electrodes containing multiple recording sites (16), allowing the acquisition of large amounts of neuronal activity data from a transect through the brain while flies are still able to sleep. The approach starts by tethering the fly, followed by positioning it on an air-supported ball. A multichannel silicon probe is then inserted laterally into the fly brain via one eye, allowing for recording of electrical signals from the retina through to the central brain. These recordings can be acquired under spontaneous conditions or in the presence of visual stimuli, and the minimal surgery promotes long-term recordings (e.g., overnight). Sleep and wake can be tracked using infrared cameras, which allow for the measurement of locomotive activity as well as microbehaviors such as proboscis extensions during sleep. The protocol has been optimized to promote subject survivability, which is an important factor when performing long-term (∼16-h) recordings. The approach described here uses specific recording probes, data acquisition devices, and analysis tools. Although it is expected that some of these items might need to be adapted to the equipment available in different laboratories, the overall aim is to provide an overview on how to record electrical activity across the brain of behaving (and sleeping) flies using this kind of approach and technology.

Multi-channel LFP recording data compression scheme using Cooperative PCA and Kalman Filter

The power consumption and wireless communication bandwidth restrict the channel count and amount of high-resolution intracortical Brain–Computer Interfaces(iBCIs). So, it is necessary to compress the captured data before transmission. Here, we propose a multi-channel data compression method on the correlation between channels for Local Field Potential(LFPs) recorded through Utah microelectrode arrays. The method improves the compression performance of the Stepwise Expectation-Maximization Principal Component Analysis(SEM-PCA) algorithm by implementing the Kalman filter. The multi-channel correlation is sampled with high resolution while the uniqueness of each channel is retained at a low rate. Then, the two parts of information are fused by the Kalman filter, and finally, the data is reconstructed with high precision and high rate. Our testing results verified the effectiveness of the proposed compression scheme. Compared to the traditional SEM-PCA, this algorithm significantly improved neural LFP reconstruction accuracy from 79.61% to 88%.

A signal EMerGes from the noise

In this issue of Cell Reports Methods, Osanai etal. report an innovative approach to extract an electromyography (EMG) signal from multi-channel local field potential (LFP) recordings using independent component analysis (ICA). This ICA-based approach offers precise and stable long-term behavioral assessment, eliminating the need for direct muscular recordings.

A 16-Channel Low-Power Neural Connectivity Extraction and Phase-Locked Deep Brain Stimulation SoC.

Growing evidence suggests that phase-locked deep brain stimulation (DBS) can effectively regulate abnormal brain connectivity in neurological and psychiatric disorders. This letter therefore presents a low-power SoC with both neural connectivity extraction and phase-locked DBS capabilities. A 16-channel low-noise analog front-end (AFE) records local field potentials (LFPs) from multiple brain regions with precise gain matching. A novel low-complexity phase estimator and neural connectivity processor subsequently enable energy-efficient, yet accurate measurement of the instantaneous phase and cross-regional synchrony measures. Through flexible combination of neural biomarkers such as phase synchrony and spectral energy, a four-channel charge-balanced neurostimulator is triggered to treat various pathological brain conditions. Fabricated in 65-nm CMOS, the SoC occupies a silicon area of 2.24 mm2 and consumes 60 μW, achieving over 60% power saving in neural connectivity extraction compared to the state-of-the-art. Extensive in-vivo measurements demonstrate multi-channel LFP recording, real-time extraction of phase and neural connectivity measures, and phase-locked stimulation in rats.

Brain states in freely behaving marmosets.

Study ObjectivesWe evaluated common marmosets as a perspective animal model to study human sleep and wake states.MethodsUsing wireless neurologger recordings, we performed longitudinal multichannel local field potential (LFP) cortical, hippocampal, neck muscle, and video recordings in three freely behaving marmosets. The brain states were formally identified using self-organizing maps.ResultsMarmosets were generally awake during the day with occasional 1–2 naps, and they slept during the night. Major electrographic patterns fall in five clearly distinguished categories: wakefulness, drowsiness, light and deep NREM sleep, and REM. Marmosets typically had 14–16 sleep cycles per night, with either gradually increasing or relatively low, but stable delta power within the cycle. Overall, the delta power decreased throughout the night sleep. Marmosets demonstrated prominent high amplitude somatosensory mu-rhythm (10–15 Hz), accompanied with neocortical ripples, and alternated with occipital alpha rhythm (10–15 Hz). NREM sleep was characterized with the presence of high amplitude slow waves, sleep spindles and ripples in neocortex, and sharp-wave-ripple complexes in CA1. Light and deep stages differed in levels of delta and sigma power and muscle tone. REM sleep was defined with low muscle tone and activated LFP with predominant beta-activity and rare spindle-like or mu-like events.ConclusionsMultiple features of sleep–wake state distribution and electrographic patterns associated with behavioral states in marmosets closely match human states, although marmoset have shorter sleep cycles. This demonstrates that marmosets represent an excellent model to study origin of human electrographical rhythms and brain states.

Simultaneous Two-Photon Voltage or Calcium Imaging and Multi-Channel Local Field Potential Recordings in Barrel Cortex of Awake and Anesthetized Mice.

Neuronal population activity, both spontaneous and sensory-evoked, generates propagating waves in cortex. However, high spatiotemporal-resolution mapping of these waves is difficult as calcium imaging, the work horse of current imaging, does not reveal subthreshold activity. Here, we present a platform combining voltage or calcium two-photon imaging with multi-channel local field potential (LFP) recordings in different layers of the barrel cortex from anesthetized and awake head-restrained mice. A chronic cranial window with access port allows injecting a viral vector expressing GCaMP6f or the voltage-sensitive dye (VSD) ANNINE-6plus, as well as entering the brain with a multi-channel neural probe. We present both average spontaneous activity and average evoked signals in response to multi-whisker air-puff stimulations. Time domain analysis shows the dependence of the evoked responses on the cortical layer and on the state of the animal, here separated into anesthetized, awake but resting, and running. The simultaneous data acquisition allows to compare the average membrane depolarization measured with ANNINE-6plus with the amplitude and shape of the LFP recordings. The calcium imaging data connects these data sets to the large existing database of this important second messenger. Interestingly, in the calcium imaging data, we found a few cells which showed a decrease in calcium concentration in response to vibrissa stimulation in awake mice. This system offers a multimodal technique to study the spatiotemporal dynamics of neuronal signals through a 3D architecture in vivo. It will provide novel insights on sensory coding, closing the gap between electrical and optical recordings.

Compressed sensing of large-scale local field potentials using adaptive sparsity analysis and non-convex optimization

Objective. Energy consumption is a critical issue in resource-constrained wireless neural recording applications with limited data bandwidth. Compressed sensing (CS) has emerged as a powerful framework in addressing this issue owing to its highly efficient data compression procedure. In this paper, a CS-based approach termed simultaneous analysis non-convex optimization (SANCO) is proposed for large-scale, multi-channel local field potentials (LFPs) recording. Approach. The SANCO method consists of three parts: (1) the analysis model is adopted to reinforce sparsity of the multi-channel LFPs, therefore overcoming the drawbacks of conventional synthesis models. (2) An optimal continuous order difference matrix is constructed as the analysis operator, enhancing the recovery performance while saving both computational resources and data storage space. (3) A non-convex optimizer that can by efficiently solved with alternating direction method of multipliers is developed for multi-channel LFPs reconstruction. Main results. Experimental results on real datasets reveal that the proposed approach outperforms state-of-the-art CS methods in terms of both recovery quality and computational efficiency. Significance. Energy efficiency of the SANCO make it an ideal candidate for resource-constrained, large scale wireless neural recording. Particularly, the proposed method ensures that the key features of LFPs had little degradation even when data are compressed by 16x, making it very suitable for long term wireless neural recording applications.

Brain-Computer-Spinal Interface Restores Upper Limb Function After Spinal Cord Injury

Brain-computer interfaces (BCIs) are an emerging strategy for spinal cord injury (SCI) intervention that may be used to reanimate paralyzed limbs. This approach requires decoding movement intention from the brain to control movement-evoking stimulation. Common decoding methods use spike-sorting and require frequent calibration and high computational complexity. Furthermore, most applications of closed-loop stimulation act on peripheral nerves or muscles, resulting in rapid muscle fatigue. Here we show that a local field potential-based BCI can control spinal stimulation and improve forelimb function in rats with cervical SCI. We decoded forelimb movement via multi-channel local field potentials in the sensorimotor cortex using a canonical correlation analysis algorithm. We then used this decoded signal to trigger epidural spinal stimulation and restore forelimb movement. Finally, we implemented this closed-loop algorithm in a miniaturized onboard computing platform. This Brain-Computer-Spinal Interface (BCSI) utilized recording and stimulation approaches already used in separate human applications. Our goal was to demonstrate a potential neuroprosthetic intervention to improve function after upper extremity paralysis.

Effects of Cortical Cooling on Activity Across Layers of the Rat Barrel Cortex.

Moderate cortical cooling is known to suppress slow oscillations and to evoke persistent cortical activity. However, the cooling-induced changes in electrical activity across cortical layers remain largely unknown. Here, we performed multi-channel local field potential (LFP) and multi-unit activity (MUA) recordings with linear silicone probes through the layers of single cortical barrel columns in urethane-anesthetized rats under normothermia (38°C) and during local cortical surface cooling (30°C). During cortically generated slow oscillations, moderate cortical cooling decreased delta wave amplitude, delta-wave occurrence, the duration of silent states, and delta wave-locked MUA synchronization. Moderate cortical cooling increased total time spent in the active state and decreased total time spent in the silent state. Cooling-evoked changes in the MUA firing rate in cortical layer 5 (L5) varied from increase to decrease across animals, and the polarity of changes in L5 MUA correlated with changes in total time spent in the active state. The decrease in temperature reduced MUA firing rates in all other cortical layers. Sensory-evoked MUA responses also decreased during cooling through all cortical layers. The cooling-dependent slowdown was detected at the fast time-scale with a decreased frequency of sensory-evoked high-frequency oscillations (HFO). Thus, moderate cortical cooling suppresses slow oscillations and desynchronizes neuronal activity through all cortical layers, and is associated with reduced firing across all cortical layers except L5, where cooling induces variable and non-consistent changes in neuronal firing, which are common features of the transition from slow-wave synchronization to desynchronized activity in the barrel cortex.

Granger causality analysis of rat cortical functional connectivity in pain

Objective. The primary somatosensory cortex (S1) and the anterior cingulate cortex (ACC) are two of the most important cortical brain regions encoding the sensory-discriminative and affective-emotional aspects of pain, respectively. However, the functional connectivity of these two areas during pain processing remains unclear. Developing methods to dissect the functional connectivity and directed information flow between cortical pain circuits can reveal insight into neural mechanisms of pain perception. Approach. We recorded multichannel local field potentials (LFPs) from the S1 and ACC in freely behaving rats under various conditions of pain stimulus (thermal versus mechanical) and pain state (naive versus chronic pain). We applied Granger causality (GC) analysis to the LFP recordings and inferred frequency-dependent GC statistics between the S1 and ACC. Main results. We found an increased information flow during noxious pain stimulus presentation in both S1ACC and ACCS1 directions, especially at theta and gamma frequency bands. Similar results were found for thermal and mechanical pain stimuli. The chronic pain state shares common observations, except for further elevated GC measures especially in the gamma band. Furthermore, time-varying GC analysis revealed a negative correlation between the direction-specific and frequency-dependent GC and animal’s paw withdrawal latency. In addition, we used computer simulations to investigate the impact of model mismatch, noise, missing variables, and common input on the conditional GC estimate. We also compared the GC results with the transfer entropy (TE) estimates. Significance. Our results reveal functional connectivity and directed information flow between the S1 and ACC during various pain conditions. The dynamic GC analysis support the hypothesis of cortico-cortical information loop in pain perception, consistent with the computational predictive coding paradigm.

State-Based Decoding of Force Signals From Multi-Channel Local Field Potentials

The functional use of brain-machine interfaces (BMIs) in everyday tasks requires the accurate decoding of both movement and force information. In real-word tasks such as reach-to-grasp movements, a prosthetic hand should be switched between reaching and grasping modes, depending on the detection of the user intents in the decoder part of the BMI. Therefore, it is important to detect the rest or active states of different actions in the decoder to produce the corresponding continuous command output during the estimated state. In this study, we demonstrated that the resting and force-generating time-segments in a key pressing task could be accurately detected from local field potentials (LFPs) in rat's primary motor cortex. Common spatial pattern (CSP) algorithm was applied on different spectral LFP sub-bands to maximize the difference between the two classes of force and rest. We also showed that combining a discrete state decoder with linear or non-linear continuous force variable decoders could lead to a higher force decoding performance compared with the case we use a continuous variable decoder only. Moreover, the results suggest that gamma LFP signals (50-100 Hz) could be used successfully for decoding the discrete rest/force states as well as continuous values of the force variable. The results of this study can offer substantial benefits for the implementation of a self-paced, force-related command generator in BMI experiments without the need for manual external signals to select the state of the decoder.

ZapLine: A simple and effective method to remove power line artifacts

Power line artifacts are the bane of animal and human electrophysiology. A number of methods are available to help attenuate or eliminate them, but each has its own set of drawbacks. In this brief note I present a simple method that combines the advantages of spectral and spatial filtering, while minimizing their downsides. A perfect-reconstruction filterbank is used to split the data into two parts, one noise-free and the other contaminated by line artifact. The artifact-contaminated stream is processed by a spatial filter to project out line components, and added to the noise-free part to obtain clean data. This method is applicable to multichannel data such as electroencephalography (EEG), magnetoencephalography (MEG), or multichannel local field potentials (LFP). I briefly review past methods, pointing out their drawbacks, describe the new method, and evaluate the outcome using synthetic and real data.

State-aware detection of sensory stimuli in the cortex of the awake mouse.

Cortical responses to sensory inputs vary across repeated presentations of identical stimuli, but how this trial-to-trial variability impacts detection of sensory inputs is not fully understood. Using multi-channel local field potential (LFP) recordings in primary somatosensory cortex (S1) of the awake mouse, we optimized a data-driven cortical state classifier to predict single-trial sensory-evoked responses, based on features of the spontaneous, ongoing LFP recorded across cortical layers. Our findings show that, by utilizing an ongoing prediction of the sensory response generated by this state classifier, an ideal observer improves overall detection accuracy and generates robust detection of sensory inputs across various states of ongoing cortical activity in the awake brain, which could have implications for variability in the performance of detection tasks across brain states.

AB062. Cortical state contribution to neuronal response variability

Background: Visual cortex neurons often respond to stimuli very differently on repeated trials. This trial-by-trial variability is known to be correlated among nearby neurons. Our long-term goal is to quantitatively estimate neuronal response variability, using multi-channel local field potential (LFP) data from single trials.

Luminance information decoding on the basis of local field potential signals of pigeon optic tectum neurons.

Important aspects of brain information processing can be understood by examining decoding of visual stimuli from neuronal response signals. In this research, the luminance information is decoded from the local field potential signal in the optic tectum region of the pigeon. We designed a luminance visual stimulus model with transient flicker characteristics, recorded multichannel local field potential (LFP) signals using a microelectrode array, extracted LFP Fourier transform energy and phase features, constructed a multivariate linear inverse filter luminance information decoding algorithm, and evaluated decoding effects using a cross-correlation method. We found that LFP signal phase decoding of luminance information yielded better effects than amplitude decoding of luminance information. In the case of optimal frequency band, channels, delay time, and other parameters, the results of phase and amplitude codecoding could reach 0.94±0.02. Comparing the differences between neuronal spike decoding and LFP decoding, we found that LFP signal phase and amplitude codecoding resulted in luminance closer to that of the actual stimulus and required fewer decoding electrode channels.

Brain Control of an External Device by Extracting the Highest Force-Related Contents of Local Field Potentials in Freely Moving Rats.

A local field potential (LFP) signal is an alternative source to neural action potentials for decoding kinematic and kinetic information from the brain. Here, we demonstrate that the better extraction of force-related features from multichannel LFPs improves the accuracy of force decoding. We propose that applying canonical correlation analysis (CCA) filter on the envelopes of separate frequency bands (band-specific CCA) separates non-task related information from the LFPs. The decoding accuracy of the continuous force signal based on the proposed method were compared with three feature reduction methods: 1) band-specific principal component analysis (band-specific PCA) method that extract the components which leads to maximum variance from the envelopes of different frequency bands; 2) correlation coefficient-based (CC-based) feature reduction that selects the best features from the envelopes sorted based on the absolute correlation coefficient between each envelope and the target force signal; and 3) mutual information-based (MI-based) feature reduction that selects the best features from the envelopes sorted based on the mutual information between each envelope and output force signal. The band-specific CCA method outperformed band-specific PCA with 11% improvement, CC-based feature reduction with 16% improvement, and MI-based feature reduction with 18% improvement. In the online brain control experiments, the real-time decoded force signal from the 16-channel LFPs based on the proposed method was used to move a mechanical arm. Two rats performed 88 trials in seven sessions to control the mechanical arm based on the 16-channel LFPs.

A Streaming PCA VLSI Chip for Neural Data Compression.

Neural recording system miniaturization and integration with low-power wireless technologies require compressing neural data before transmission. Feature extraction is a procedure to represent data in a low-dimensional space; its integration into a recording chip can be an efficient approach to compress neural data. In this paper, we propose a streaming principal component analysis algorithm and its microchip implementation to compress multichannel local field potential (LFP) and spike data. The circuits have been designed in a 65-nm CMOS technology and occupy a silicon area of 0.06mm. Throughout the experiments, the chip compresses LFPs by 10 at the expense of as low as 1% reconstruction errors and 144-nW/channel power consumption; for spikes, the achieved compression ratio is 25 with 8% reconstruction errors and 3.05-W/channel power consumption. In addition, the algorithm and its hardware architecture can swiftly adapt to nonstationary spiking activities, which enables efficient hardware sharing among multiple channels to support a high-channel count recorder.

Adaptive common average reference for in vivo multichannel local field potentials.

For in vivo neural recording, local field potential (LFP) is often corrupted by spatially correlated artifacts, especially in awake/behaving subjects. A method named adaptive common average reference (ACAR) based on the concept of adaptive noise canceling (ANC) that utilizes the correlative features of common noise sources and implements with common average referencing (CAR), was proposed for removing the spatially correlated artifacts. Moreover, a correlation analysis was devised to automatically select appropriate channels before generating the CAR reference. The performance was evaluated in both synthesized data and real data from the hippocampus of pigeons, and the results were compared with the standard CAR and several previously proposed artifacts removal methods. Comparative testing results suggest that the ACAR performs better than the available algorithms, especially in a low SNR. In addition, feasibility of this method was provided theoretically. The proposed method would be an important pre-processing step for in vivo LFP processing.

Canonical correlation between LFP network and spike network during working memory task in rat

Working memory refers to a system to temporary holding and manipulation of information. Previous studies suggested that local field potentials (LFPs) and spikes as well as their coordination provide potential mechanism of working memory. Popular methods for LFP-spike coordination only focus on the two modality signals, isolating each channel from multi-channel data, ignoring the entirety of the networked brain. Therefore, we investigated the coordination between the LFP network and spike network to achieve a better understanding of working memory. Multi-channel LFPs and spikes were simultaneously recorded in rat prefrontal cortex via microelectrode array during a Y-maze working memory task. Functional connectivity in the LFP network and spike network was respectively estimated by the directed transfer function (DTF) and maximum likelihood estimation (MLE). Then the coordination between the two networks was quantified via canonical correlation analysis (CCA). The results show that the canonical correlation (CC) varied during the working memory task. The CC-curve peaked before the choice point, describing the coordination between LFP network and spike network enhanced greatly. The CC value in working memory showed a significant higher level than inter-trial interval. Our results indicate that the enhanced canonical correlation between the LFP network and spike network may provide a potential network integration mechanism for working memory.