Moving target detection (MTD) is a research hotspot in radar signal processing. Generally, the time information of non-cooperative moving targets entering and leaving a radar coverage area is unknown, which would lead to severe performance loss for target parameter estimation, detection, and imaging. Unlike our previous research work, this paper addresses the motion parameters estimation and refocusing problem for a radar maneuvering target with unknown entry and departure time. A computationally efficient method that utilizes extended Kalman filtering (EKF) for phase tracking is proposed to estimate the entry and departure times. The proposed method first performs range cell migration correction (RCMC) on the pulse compression echo signal. Then, the maneuvering target signal is modeled as a polynomial phase signal (PPS) and utilizes the EKF to construct a binary state-space equation for polynomial phase tracking. Finally, by comparing the phase tracking results of the noise cell and the signal cell, one can derive estimates for the entry/departure time and motion parameters. Compared with existing methods, the proposed method avoids multi-dimension searching on the parameter space, so it has a prominent advantage in computational complexity. Moreover, the core of the proposed method lies in tracking the polynomial phase, which is not constrained by the order of target motion, and has wider applicability in practice. Both simulated and public radar data are used to validate the effectiveness of the proposed method.