Anthropogenic contamination by heavy metals in fluvial systems is mostly bound to fine- grained clay minerals and organic substances, which accumulate by vertical accretion in sediment traps along river courses (oxbow lakes, dams and flood- plains). These environmental settings are considered as good archives of historical changes in contamina- tion. Much less attention, however, is paid to deposits of river channels, which act as sourcing transport paths for these archives and/or build archives of their own. In order to provide a better insight into the spatio- temporal distribution of pollutants in channel deposits, we investigated contamination levels of Cu, Pb and Zn in a series of sediment cores along the River Morava, a left-hand tributary of the Danube River, Czech Republic. In particular, the relationships between metal concentrations, sediment lithology (facies), grain size, magnetic susceptibility and min- eralogy and chemistry of fly-ash particles were inves- tigated. Element chemistry and lithology of channel deposits were compared with those of the nearby floodplain deposits in the same catchment. Four river-channel facies were defined, ranging from sandy gravels to clayey silts, and confronted with the flood- plain sediments. Al/Si ratios were found to be useful proxies of grain size, and Al was utilized as an excellent normalizing element for heavy metals, which filters out much of the grain size effects on contamination. The floodplain deposits are significantly less contaminated than their river-channel counterparts. Heavy-metal contamination of river bed sediments (expressed as enrichment factors, EFs) is not simply bound to fine-grained particles, and much of the contamination was found in coarse-grained, sandy facies. Elevated EFs of Zn, Cu and Pb in several sediment layers, which show high magnetic suscep- tibility (MS), high values of MS normalized to Fe and a high proportion of magnetic fly-ash spherules and their chemistry suggest that significant part of the heavy-metal contamination can be carried by magnetic fly-ash spherules. A part of this contamina- tion is bound to coarse-grained fluvial facies, indi- cating that the magnetic spherules can be transported as bed load sediments. Magnetic pollution and heavy-metal pollution can therefore coincide in river bed deposits. It is suggested that most of this con- tamination can be related to local point sources of pollutants (fly-ash deposit spills).