This study developed a new structured nuclear database to improve the readability and extensibility of the ACE (A Compact ENDF) nuclear database, save disk space, reduce memory usage, and enhance the computational efficiency of the Reactor Monte Carlo (RMC) code. A Python package was developed to store nuclear data in HDF5 format. Compared to the ACE database, the HDF5-format database shows significant improvements: an 80% reduction in disk space for continuous energy neutron data and a 60% reduction for neutron thermal scattering data. The HDF5-format database was implemented in RMC’s criticality calculation mode and validated through VERA benchmark problem 2B, demonstrating perfect agreement with the ACE results in keff and neutron flux counts. The Computational results indicate a 7.7% reduction in memory usage and a 20.1% improvement in computational efficiency with the HDF5-format database. Additional tests show that using the database at a single temperature point reduces memory usage by 5.4% and running time by 13.2%. At two temperature points, memory usage decreases by 35.2% and running time by 18.0%. The new data structure reduces temperature-independent redundant data and improves indexing efficiency, leading to greater savings with more temperature points. This development enhances performance of criticality calculation of RMC and addresses ACE database limitations.