This account describes our recent studies on zwitterionic mercury(II) complexes with two diphosphonium salts, [PPh2(CH2)nPPh2CH2C(O)C6H4Cl)]Br (n = 1 (S1) and 2 (S2)), derived from 1,2-bis(diphenyl-phosphino)methane (dppm) and 1,2-bis(diphenyl-phosphino)ethane (dppe). These complexes were synthesized through reactions between diphosphonium salts and HgX2 in equimolar ratio and characterized by elemental analysis, IR, 1H, 13C and 31P NMR spectroscopic methods. The structure of complex [HgI2Br(PPh2(CH2)2PPh2CH2C(O)C6H4Cl)] (6) was determined by a single crystal X-ray structural analysis. The results indicated that the mercury center in this complex is four-coordinated in a distorted tetrahedral configuration. The results confirmed that the coordination of ligand to metal occurred through the phosphine group (P-coordination mode). Furthermore, antibacterial/antifungal activities of the diphosphonium ligands and their complexes were tested against two Gram-negative bacteria Escherichia coli (ATCC 25922) and Pseudomonas aeruginosa (ATCC 9027) and two Gram-positive bacteria Staphylococcus aureus (ATCC 6538) and Bacillus subtilis (ATCC 6633) as well as two fungi (Geotrichum sp. and Candida albicans). It seems that the chemical compounds reported herein may be used for control of pathogenic bacteria/fungi.