A study was made to determine the most probable in vivo distribution of polysomes, ribosomes and ribosomal subunits in early log-phase Escherichia coli. Experimental conditions for obtaining a type I-polysome profile in which there is little or no 70 s monomers were compared to those for obtaining a type II profile in which 12 to 15% of the ribosomes are present as 70 s monomers. Polysome profiles of lysates of E. coli strains with decreasing endogenous ribonuclease activity (strains 3000, Q13, 1113B) were almost identical, which suggested that the 70 s monomers of a type II profile were not derived from polysomes by endogenous ribonuclease activity. Furthermore, purified ribonuclease II degraded neither the larger polysomes in a lysate nor isolated polysome dimers. Even in 60 m m-KCl, where one finds a large peak of ribosomes, addition of yeast RNA oligonucleotides to the lysate and to the sucrose gradients results in suppression of the monomer peak. The same effect can be obtained with higher concentrations of KCl in the lysate and the sucrose gradient. On the other hand, isolated 70 s monomers are stable when centrifuged through gradients containing RNA oligonucleotides or high KCl concentrations. These are all conditions which will inhibit the activity of E. coli RNase II but are also conditions which block initiation of protein synthesis. Polysome profiles were also examined in E. coli lysates to which various inhibitors of protein synthesis were added: chloramphenicol, dihydro-streptomycin, mikamycin, sparsomycin and tetracycline. The results indicated that the 70 s monomers observed in type II profiles were formed in vitro after cell lysis by association of native 50 s and 30 s ribosomal subunits to form 70 s complexes. Studies with trimethoprim and puromycin, which were used as in vivo inhibitors of protein synthesis, supported this hypothesis. Further support of this hypothesis came from analyzing the pulse-labeled RNA associated with the 70 s monomer in TMK § § Abbreviations used: TM buffer is 0.005 m-Tris pH 7.4 at 5 °C, with 0.01 m-MgSO 4; TMK is TM buffer containing 60 m m-KCl; TMNa is TM buffer containing 60 m m-NaCl; TCGl is Tris-Casamino acid-glycerol synthetic medium (cf. Franklin, 1966); STE is 0.1 m-NaCl, 0.05 m-Tris buffer, pH 7.2 at 0 °C, 0.001 m-EDTA; TS is Tris (0.1 m)-sucrose (20% w v ), pH 8.1 at 5 °C; PNPase is polynuoleotide phosphorylase. lysates. This RNA, which is mostly messenger RNA, should be degraded if the 70 s peak arises from breakdown of polysomes and should be heterogeneous and large if the 70 s peak represents artifactual 70 s monosemes formed with intact mRNA. The latter was found to be true. Also, it was possible to obtain a small amount of association of isolated 50 and 30 s subunits to form a 70 s complex when they were mixed with spheroplasts prior to lysis in TMK but not in TMNa. In conclusion, all of our experiments suggest that the type I profile is probably most representative of the in vivo distribution of polysomes, ribosomes and ribosomal subunits in early log-phase E. coli.
Read full abstract