Seagrass meadows are highly structured habitats of great socioeconomic value but are declining globally due to human impacts. The northern Gulf Coast of Florida contains one of the largest relatively unaltered seagrass habitats (~3,000 km2), making it a model system for acquiring baselines to better manage and monitor seagrass meadows. This project investigated spatial gradients in ecological and taphonomic attributes of surficial seagrass-associated benthic mollusk death assemblages. An updated analysis of water parameters (based on project COAST data) indicated that total dissolved phosphorous (TDP) and chlorophyll-a (CHL-a) concentrations increased steadily northward. To analyze the historical ecology of local seagrass meadows, mollusk assemblages were bulk sampled at 12 stations across multiple estuaries along the gradient. Radiocarbon dating of valves (n = 90) from several estuaries indicated that the assemblages represented a multi-millennial accumulation with a median shell age of 1760 AD. Focusing on two abundant bivalves found within all estuaries, Transennella spp and Crassostrea virginica, the study evaluated spatial trends in body size, traces of predation, and post-mortem shell alterations. The results, primarily focused on Transennella spp., indicated that ecological and taphonomic characteristics varied notably, both among and within estuaries. Relative abundance, body size, and taphonomic attributes did not appear to correlate significantly with productivity or drilling frequency. However, drilling frequency correlated significantly with TDP and CHL-a, suggesting that predator-prey interactions may co-vary tightly with productivity. These results suggest that spatial gradients in predation can be archived by drilling frequencies in death assemblages. Moreover, the consistency between the long-term record of predation and modern gradient conditions suggests that long-term spatial dynamics of predator-prey interactions may be hydrologically controlled.