Molecule-molecule Interactions Research Articles

Adsorption Study of Main Gas Products from Water Radiolysis on 4A Zeolite by Numerical Simulations

This work is motivated by the results obtained during a study on the tritiated water adsorbed in zeolite [L. Frances et al., J. Phys. Chem. C, 119, 28462 (2015)]. The decomposition of water by radiolysis leads to the production of dioxygen and dihydrogen as main stable products. By studying the evolution of their quantities of matter, one can note an increase in a first stage, followed by a decrease after a few hundred days of storage until complete disappearance. This interesting process depends on the water loading ratios, expressed in mass percentage, lying between 4%, and 19%; such a phenomenon is not observed in saturated zeolite. Our goal is to determine, through numerical simulations, how this disappearance, which is associated with the recombination of the radiolysis products, occurs by making a microscopic study on the adsorption of H2O, H2, and O2 molecules on 4A zeolite (Z4A). Computational physics is useful to understand the effects of molecule adsorption on its structure and also to closely examine the molecule-zeolite and molecule-molecule interactions. Indeed, different simulation methods are used from static to dynamic studies employing both quantum and classical tools with the periodical structure of Z4A. To summarize, the adsorption of molecules from the radiolysis of water are studied according to different points of view (quantum and classical) using various numerical simulation tools, such as density functional theory for ab initio structural optimization and energy calculation, Monte Carlo to study the distribution of the adsorbed molecules in the zeolite, and molecular dynamics to follow the evolution of the system (molecule + zeolite) over time depending on the temperature, in order to extract as much information as possible (structurally, statistically, energy, electronically) to understand the main problematic of this work: How do stable molecules issued from radiolysis recombine in Z4A?

Probing Single-Molecule Binding Event by the Dynamic Counting and Mapping of Individual Nanoparticles.

Measuring binding processes at the single-molecule level underpin significant functions in understanding biological events. Single-nanoparticle imaging techniques are providing a new concept for mapping the heterogeneous behaviors and characterizations of individual dynamics such as molecule-molecule interactions. Here, we develop the optical imaging techniques for directly counting and monitoring the binding and motion events of single nanoparticles linked to the substrate via the specific and reversible interactions between biomolecules. The one-step digital immunoassay realizes the biomolecular detection based on dynamic counting of the single nanoparticle binding event to substrate with the bright-field imaging. The detection limit achieves 8.4 pg/mL for procalcitonin with detection time of 14 min. Meanwhile, we map the accurate trajectory of single nanoparticle switching between different target molecules among the x-y plane with the total internal reflection imaging technique, which reveals the spatial coordinates of single target molecules on the substrate surface with high spatial and temporal resolutions.

A multi-scale eco-evolutionary model of cooperation reveals how microbial adaptation influences soil decomposition

The decomposition of soil organic matter (SOM) is a critical process in global terrestrial ecosystems. SOM decomposition is driven by micro-organisms that cooperate by secreting costly extracellular (exo-)enzymes. This raises a fundamental puzzle: the stability of microbial decomposition in spite of its evolutionary vulnerability to “cheaters”—mutant strains that reap the benefits of cooperation while paying a lower cost. Resolving this puzzle requires a multi-scale eco-evolutionary model that captures the spatio-temporal dynamics of molecule-molecule, molecule-cell, and cell-cell interactions. The analysis of such a model reveals local extinctions, microbial dispersal, and limited soil diffusivity as key factors of the evolutionary stability of microbial decomposition. At the scale of whole-ecosystem function, soil diffusivity influences the evolution of exo-enzyme production, which feeds back to the average SOM decomposition rate and stock. Microbial adaptive evolution may thus be an important factor in the response of soil carbon fluxes to global environmental change.

The Interplay between Phase Separation and Gene-Enhancer Communication: A Theoretical Study

The phase separation occurring in a system of mutually interacting proteins that can bind on specific sites of a chromatin fiber is investigated here. This is achieved by means of extensive molecular dynamics simulations of a simple polymer model that includes regulatory proteins as interacting spherical particles. Our interest is particularly focused on the role played by phase separation in the formation of molecule aggregates that can join distant regulatory elements, such as gene promoters and enhancers, along the DNA. We find that the overall equilibrium state of the system resulting from the mutual interplay between binding molecules and chromatin can lead, under suitable conditions that depend on molecules concentration, molecule-molecule, and molecule-DNA interactions, to the formation of phase-separated molecular clusters, allowing robust contacts between regulatory sites. Vice versa, the presence of regulatory sites can promote the phase-separation process. Different dynamical regimes can generate the enhancer-promoter contact, either by cluster nucleation at binding sites or by bulk spontaneous formation of the mediating cluster to which binding sites are successively attracted. The possibility that such processes can explain experimental live-cell imaging data measuring distances between regulatory sites during time is also discussed.

Multichannel interactions of two atoms in an optical tweezer

The multichannel Na-Cs interactions are characterized by a series of measurements using two atoms in an optical tweezer, along with a multichannel quantum defect theory (MQDT). The triplet and singlet scattering lengths are measured by performing Raman spectroscopy of the Na-Cs motional states and least-bound molecular state in the tweezer. Magnetic Feshbach resonances are observed for only two atoms at fields which agree well with the MQDT. Our methodology, which promotes the idea of an effective theory of interaction, can be a key step towards the understanding and the description of more complex interactions. The tweezer-based measurements in particular will be an important tool for atom-molecule and molecule-molecule interactions, where high densities are experimentally challenging and where the interactions can be dominated by intra-species processes.

Electrospray Deposition and Magnetic Properties of Prototypical Molecular Magnets

The controlled deposition, characterization and manipulation of single molecule magnets (SMMs) on surfaces is one of the crucial points to be addressed with regard to their possible implementation as functional units in future electronic and spintronic devices. Profound understanding of molecule-molecule and molecule-substrate interactions is required as well as unraveling their effect on the molecular electronic and magnetic properties. Local measurement techniques like scanning tunneling microscopy (STM) together with ensemble-averaging methods like X-ray absorption spectroscopy (XAS) have been proven to set up an appropriate frame to study these materials. The majority of these studies deal with SMMs that exhibit rather simple structures with mostly only one magnetic ion. The situation gets more complicated when it comes to larger polynuclear compounds that can be quite fragile with respect to surface deposition or not easy to organize on surfaces due to their bulky ligand shell. Here, we provide an overview of our results on successful deposition of polynuclear SMMs on functional surfaces by employing the electrospray ion beam deposition method. For two prototypes in the field, Mn12-ac and Fe4H, we obtain highly ordered submonolayers on functional surfaces and elucidate the electronic coupling to the respective substrates using scanning tunneling spectroscopy (STS). New results for Mn12-ac on graphene/Ir(111) and for Fe4H on Au(111) are compared to previous studies on a decoupling graphene layer. X-ray magnetic circular dichroism (XMCD) measurements on submonolayers of uniformly aligned Fe4 molecules on both substrates reveal its robust magnetism, showing magnetic anisotropy values similar to bulk.

Theoretical approach to study the formation of C2H4O2 isomers in interstellar medium through reaction between interstellar formaldehyde molecules**CST-MRP Project

The three isomers of C2H4O2, viz., glycolaldehyde (HCOCH2OH), acetic acid (CH3COOH) and methyl formate (HCOOCH3), have been detected in copious amounts in the interstellar medium (ISM). The possibility for formation of these molecules through interstellar formaldehyde (HCHO) has been explored by using the quantum chemical approach described by density functional theory (DFT) and second order Moller-Plesset perturbation (MP2) theory with a 6–311G(d,p) basis set in the gas phase as well as in icy grains. The associated molecule-molecule interactions have been discussed to study the formation of isomers of C2H4O2 in ISM. The reactions of two formaldehyde molecules exhibit a considerable potential barrier but due to quantum tunneling, these reactions could be possible in ISM. The chemical pathway is exothermic, which gives rise to a high probability for the formation of all three isomers, viz. glycolaldehyde, methyl formate and acetic acid, in interstellar space. Anharmonic rotational vibration, centrifugal distortion constants and coupling constants are also calculated and results suggest that the vibrations are harmonic in nature.

Process Simulations of the Direct Non-Aqueous Gas Stripping Process for CO2 Desorption

The integration of the direct steam stripping (DSS) process with organic working fluid promises a significant reduction in the energy penalty for the CO2 capture process. This work investigates the mechanisms of the mass transfer enhancement in direct pentane stripping (DPS) process using simulation methods. Through regressing the molecule-molecule interaction parameters, a quaternary system thermodynamic model (QSTM) is developed to successfully predict the vapor-liquid equilibrium of Amine/CO2/Pentane/H2O system. Three typical solvents, monoethanolamine (MEA), methyldiethanolamine (MDEA), and 2-amino-2-methyl-1-propanol (AMP) are studied in this work. The DPS process using 30 wt.% MEA, 30 wt.%MDEA, and 30 wt.% AMP exhibits the solvent regeneration energy of 2.55, 2.65, and 2.01 GJ/tCO2 under the optimal conditions, which is 34%, 32%, and 48% lower than of the conventional MEA-based process. DPS using MDEA shows an energy advantage over the other two solvents because of the high CO2 equilibrium partial p...

Confinement of a three-dimensional organic molecule to two dimensions on a surface

We investigate the adsorption geometry of a three-dimensional organic molecule, anilino-nitro azobenzene, within hydrogen-bonded supramolecular structures on Au(111) by low temperature scanning tunneling microscopy. Therein, three conformational isomers exist, completely planar trans and cis-isomers and a non-planar, but surface adapted cis-isomer. The anilino-end of the molecule is planar for all isomers. In contrast, the nitro-end of the cis-isomer is only planar, if the nitro-end of the molecule forms hydrogen bonds. Our study pinpoints the subtle balance between molecule-substrate and molecule-molecule interaction in adsorption-induced bond-angle distortion that drive partial or full planarization of the molecule.

Distinct Crystalline Aromatic Structural Motifs: Identification, Classification, and Implications.

Spatial noncovalent helical organization of nucleobases in DNA and radial organization of chromophores in natural light-harvesting systems are fascinating yet enigmatic. Understanding the numerous weak interactions that drive the formation of elegant supramolecular architectures in native natural systems and developing bioinspired design strategies have seen a surge of interest in recent decades. Self-assembly of functional chromophores in the crystalline phase is a definitive strategy to identify novel molecule-molecule interactions, in particular, atom-atom interactions, and to understand the synergistic nature of noncovalent interactions that stabilizes the supramolecular organization. This Account narrates our recent efforts in developing desirable supramolecular motifs employing weak interaction-based strategies and our observation of deviations from the common motifs chartered in aromatic systems. Modulation of long-range aromatic interactions through chemical modifications (acylation, benzoylation, haloacylation, and alkylation of chromophores) to attain a preferred stacking (herringbone, lamellar, or columnar) is presented. Particular attention has been given to attaining lamellar or columnar packing possessing potential interchromophoric electronic coupling mediated high charge mobility. Supramolecular arrangements of noncovalently or covalently associated donor-acceptor systems that open up additional possibilities of packing modes (segregated, mixed etc.) are explored. Our persistent efforts yielded distinct twisted-segregated and alternate distichous stacks for the nonparallel covalently linked donor-acceptor systems that favor a long-lived photoinduced charge-separated state. We further move on to discuss the unconventional packing motifs that were identified recently. The highly sought-after Greek cross (+) stacking of chromophores in crystalline phase and an elegant crystalline radial arrangement of chromophores are examined. The Greek cross (+) stacked architecture exhibits monomer-like emission characteristics owing to the absence of exciton coupling across the orthogonally stacked chromophores. Crystalline helical chromophore assembly is yet another emerging motif with far-reaching applications in domains ranging from asymmetric catalysis to chiral smart materials and has been accounted here by citing certain phenomenal examples from literature. Thus, this Account demonstrates that identifying and classifying new structural motifs based on topological aspects, such as interchromophoric orientation (cross) and extended chromophore arrangement in the crystal lattice (radial, helical, etc.), are crucial since such fundamental characteristics dictate the properties emerging out of the corresponding motifs. Encouraged from ours and others' works, we propose the addition of new aromatic supramolecular structural motifs, namely, cross-stacked, helical, and radial arrangements, in order to expand the classification. We believe that identifying new emergent property-based supramolecular motifs and investigating the methods to achieve the desired motif will eventually have implications in fundamental crystal engineering, supramolecular chemistry, and biomimetic design of functional materials.

Optomechanical heat transfer between molecules in a nanoplasmonic cavity

We explore whether localized surface plasmon polariton modes can transfer heat between molecules placed in the hot spot of a nanoplasmonic cavity through optomechanical interaction with the molecular vibrations. We demonstrate that external driving of the plasmon resonance indeed induces an effective molecule-molecule interaction corresponding to a new heat transfer mechanism, which can even be more effective in cooling the hotter molecule than its heating due to the vibrational pumping by the plasmon. This novel mechanism allows to actively control the rate of heat flow between molecules through the intensity and frequency of the driving laser.

Nonrandom two-liquid activity coefficient model for aqueous polyelectrolyte solutions

A comprehensive thermodynamic model is established to describe the thermodynamic properties of solvent water and mobile ions in aqueous polyelectrolyte solutions. The model accounts for excess Gibbs free energy of aqueous polyelectrolyte solutions with two contributions: (1) the long-range electrostatic polyion-ion interactions treated with Manning's limiting law and the long-range electrostatic ion-ion interactions treated with the Pitzer-Debye-Hückel equation, and (2) the short-range molecule-molecule, molecule-ion and ion-ion interactions treated with the electrolyte nonrandom two-liquid equation. Validated with extensive data sets of osmotic coefficients and mobile ion activity coefficients, the model is capable of systematically correlating and extrapolating thermodynamic properties of aqueous polyelectrolyte solutions.

On Controllability and Applicability of Surface Molecular Self-Assemblies.

Molecular self-assembly (MSA) refers to spontaneous arrangement of molecular building blocks into ordered structures governed by weak interactions. Due to its high versatility and reversibility, MSA has been widely employed as a robust bottom-up approach to fabricating low-dimensional functional nanostructures, which are used in various applications in nanoscience and technology. To date, tremendous effort has been devoted to constructing various MSAs at surfaces, ranging from self-assembled monolayers and two-dimensional (2D) nanoporous networks to complex 2D quasicrystals and Sierpiński triangle fractals. However, precise control of the assembled structures and efficient achievement of their full applicability remain two major challenges in the MSA field. As another widely employed bottom-up approach to fabricating nanostructures, on-surface reaction (OSR) refers to a reaction that occurs on the surface and is two-dimensionally confined. OSR offers the possibility to synthesize compounds that may not be feasibly achieved in solution chemistry. Compared with MSA based on weak intermolecular interactions, OSR-based structures possess high thermal and chemical stabilities due to internal strong covalent bonds. In this Account, we briefly overview recent achievements of MSAs on single crystal metal surfaces with a focus on their controllability and applicability in tweaking the properties of the molecular building blocks involved. Emphasis will be particularly placed upon mediation of OSRs with the MSA strategy. To explore surface MSAs, on the one hand, scanning tunneling microscopy and spectroscopy have been routinely employed as the experimental tools to probe the intermolecular interactions as well as geometric and electronic structures of the assemblies at the atomic and molecular levels. On the other hand, density functional theory and molecular dynamics have been theoretically applied to model and calculate the assembling systems, furthering our understanding of the experimental results. In principle, MSA is primarily balanced by molecule-molecule and molecule-substrate interactions under vacuum conditions. In terms of the assembling methodologies, people have been attempting to achieve rational design, accurate prediction, and controllable construction of assembled molecular nanostructures, namely, tentative design of specific backbones and functional groups of the molecular building blocks, and careful control of the assembling parameters including substrate lattice, temperature, coverage, and external environment as well. An obvious goal for the development of these methodologies lies in the ultimate applications of these MSAs. MSA can retrospectively affect the properties of the assembling molecules. For instance, self-assembled structures not only can serve as secondary templates to host guest molecules but also can stabilize surface metal adatoms. In fact, the electronics, magnetism, and optics of MSAs have been successfully explored. In surface chemistry, the MSA strategy can be further applied to mediate OSRs in at least three aspects: tweaking reaction selectivity, changing reaction pathway, and restricting reaction site. The governing principle lies in that the self-assembled molecules are confined in the assemblies so that the pre-exponential factors and the energy barriers in the Arrhenius equation of the involved reactions could be substantially varied because the subtle reaction mechanisms may change upon assembling. In this sense, the MSA strategy can be efficiently exploited to tune the properties of the assembling molecules and mediate OSRs in surface chemistry.

Orientation Control of the Molecular Recognition Layer for Improved Sensitivity: a Review

Biosensors have been used in various fields of biological analysis, such as for quantification of analytes and the study of molecule-molecule interactions. Orientation control of the molecular recognition layer is one of the easiest and most effective ways to improve the sensitivity of biosensors. In this review, the orientation control of molecular recognition molecules, such as antibodies, aptamers, and enzymes, is discussed. The review compares the improvement in the sensitivity and binding activity of biosensors achieved through orientation control with that achieved through random orientation. Immobilization methods of antibodies for orientation control are first discussed, with a focus on immobilization of the fragment crystallizable region of antibodies, which is the most studied technique. Covalent and non-covalent immobilization strategies are also discussed, and their effect on the sensitivity of biosensors is summarized. Lastly, the orientation control of other molecular recognition molecules (aptamers and enzymes) was discussed and the applications of molecular recognition molecules as biosensors are discussed.

Cooperativity and coverage dependent molecular desorption in self-assembled monolayers: computational case study with coronene on Au(111) and HOPG.

One of the common practices in the literature of molecular desorption is the comparison of theoretically (mostly using DFT) calculated single molecule adsorption energies with experimental desorption energies from studies like temperature programmed desorption (TPD) etc. Comparisons like those do not consider that the experimental desorption energies are obtained via ensemble techniques while theoretical values are calculated at the single molecule level. Theoretical values are generally based upon desorption of a single molecule from a clean surface, or upon desorption of an entire monolayer. On the other hand, coverage dependent molecule-molecule interactions add to and modify molecule-substrate interactions that contribute to the experimentally determined desorption energies. In this work, we explore the suitability of an additive nearest neighbor model for determining general coverage dependent single molecule desorption energies in non-covalent self-assembled monolayers (SAMs). These coverage dependent values serve as essential input to any model attempting to reproduce coverage dependent desorption or for understanding the time dependent desorption from a partially covered surface. This method is tested using a case study of coronene adsorbed on Au(111) and HOPG substrates with periodic DFT calculations. Calculations show that coronene exhibits coverage and substrate dependence in molecular desorption. We found that intermolecular contact energies in the coronene monolayer are not strongly influenced by the HOPG substrate, while coronene desorption on Au(111) exhibits strong cooperativity where the additive model fails.

Biochemical, molecular, and elemental profiling of Withania somnifera L. with response to zinc stress.

Zn stress seriously induces various toxic responses in Withania somnifera L., when accumulated above the threshold level which was confirmed by investigating the responses of protein, expression of antioxidant enzymes, and elemental profiling on accumulation of Zn. Zn was supplemented in the form of ZnSO4 (0, 25, 50, 100, and 200 μM) through MS liquid medium and allowed to grow the in vitro germinated plants for 7 and 14 days. The study revealed that when the application of Zn increased, a significant reduction of growth characteristics was noticed with alterations of proteins (both disappearance and de novo synthesis). The activity of CAT, SOD, and GPX were increased up to certain concentrations and then declined, which confirmed through in-gel activity under different treatments. RT-PCR was conducted by taking three sets of genes from CAT (RsCat, Catalase1, Cat1) and SOD (SodCp, TaSOD1.2, MnSOD) and found that gene RsCat from CAT and MnSOD from SOD have shown maximum expression of desired genes under Zn stress, which indicate plant's stress tolerance mechanisms. The proton-induced X-ray emission study confirmed an increasing order of uptake of Zn in plants by suppressing and expressing other elemental constituents which cause metal homeostasis. This study provides insights into molecular mechanisms associated with Zn causing toxicity to plants; however, cellular and subcellular studies are essential to explore molecule-molecule interaction during Zn stress in plants.

Two-Dimensional versus Three-Dimensional Self-Assembly of a Series of 5-Alkoxyisophthalic Acids.

Physisorbed self-assembled monolayers (SAMs) have been suggested as potential models for three-dimensional (3D) crystallization. This work studies the effect of altering the chain length of 5-alkoxyisophthalic acid (C nISA) on self-assembled morphology in both two-dimensional (2D) and 3D to explore the extent comparisons can be drawn between dimensions. Previous studies of 5-alkoxyisophthalic acid at solid-liquid interfaces (2D) reported different morphologies for C5ISA and C6ISA-alkoxy chains on the one hand and C10ISA and C18ISA on the other. Independently, also in 3D a dependence of morphology on chain length has been reported, including an unexpected inclusion of a solvent in the 3D morphology of C6ISA, while the previous reports of 2D self-assembly were driven only by molecule-molecule and molecule-substrate interactions. However, a complete set of data for comparison has been missing. Here, we report scanning tunneling microscopy (STM) and molecular dynamics simulations performed for C2ISA self-assembled monolayers (SAMs) and STM imaging of C6ISA-C9ISA SAMs, to further examine self-assembly behavior in 2D. In 3D, X-ray diffraction analysis of C2ISA single crystals was carried out to complete the data set. With a complete set of data, it was observed that regardless of the dimension, short-chain-length C nISAs formed H-bonding-dominated structures, mid-chain-length C nISAs exhibited solvent-dependent morphologies, and long-chain-length C nISAs displayed van der Waals-dominated solvent-independent structures. However, the transition point among morphologies occurred at different chain lengths in 2D and 3D regardless of the dominant interaction. The results of this study inform the design of 2D films and guide the application of knowledge from physisorbed SAMs to 3D systems, including mixed-dimensional (2D/3D) van der Waals heterostructures.

Chirality at two-dimensional surfaces: A perspective from small molecule alcohol assembly on Au(111).

The delicate balance between hydrogen bonding and van der Waals interactions determines the stability, structure, and chirality of many molecular and supramolecular aggregates weakly adsorbed on solid surfaces. Yet the inherent complexity of these systems makes their experimental study at the molecular level very challenging. In this quest, small alcohols adsorbed on metal surfaces have become a useful model system to gain fundamental insight into the interplay of such molecule-surface and molecule-molecule interactions. Here, through a combination of scanning tunneling microscopy and density functional theory, we compare and contrast the adsorption and self-assembly of a range of small alcohols from methanol to butanol on Au(111). We find that longer chained alcohols prefer to form zigzag chains held together by extended hydrogen bonded networks between adjacent molecules. When alcohols bind to a metal surface datively via one of the two lone electron pairs of the oxygen atom, they become chiral. Therefore, the chain structures are formed by a hydrogen-bonded network between adjacent molecules with alternating adsorbed chirality. These chain structures accommodate longer alkyl tails through larger unit cells, while the position of the hydroxyl group within the alcohol molecule can produce denser unit cells that maximize intermolecular interactions. Interestingly, when intrinsic chirality is introduced into the molecule as in the case of 2-butanol, the assembly changes completely and square packing structures with chiral pockets are observed. This is rationalized by the fact that the intrinsic chirality of the molecule directs the chirality of the adsorbed hydroxyl group meaning that heterochiral chain structures cannot form. Overall this study provides a general framework for understanding the effect of simple alcohol molecular adstructures on hydrogen bonded aggregates and paves the way for rationalizing 2D chiral supramolecular assembly.

Quantum Transport through a Single Conjugated Rigid Molecule, a Mechanical Break Junction Study.

This Account provides an overview of our recent efforts to unravel charge transport characteristics of a metal-molecule-metal junction containing an individual π-conjugated molecule. The model system of our choice is an oligo(phenylene-ethynylene) consisting of three rings, in short OPE3, which represents a paradigmatic model system for molecular-scale electronics. Members of the OPE family are among the most studied in the field thanks to their simple and rigid structure, the possibility of chemically functionalizing them, and their clear transport characteristics. When investigating charge transport in molecular systems, two general directions can be distinguished: one in which assemblies composed of many molecules contacted in parallel are studied, while in the other a single molecule is investigated at a time. In the former approach, molecule-molecule interactions and ensemble-averaged quantities may play a role, thereby introducing broadening of spectral features and hindering the study of the behavior of individual molecules making it more difficult to deconvolute local and intrinsic molecular effects from collective ones. In contrast, single-molecule experiments directly probe individual molecular features and, when they are repeated many times, allow build up of a statistical representation of the changes introduced by, e.g., different junction configurations. Especially in recent years, experimental techniques have advanced such that now large sets of individual events can be measured and analyzed with statistical tools. To study individual single-molecule junctions, we use the break junction technique, in which two sharp movable electrodes are formed by breaking a thin metallic wire and used to contact a single or few molecules. By probing thousands of single-molecule junctions in different conditions, we show that their creation involves independent events justifying the statistical tools that are used. By combining room- and low-temperature data, we show that the dominant transport mechanism for electrons through the OPE3 molecule is off-resonant tunneling. The simplest model capturing transport details in this case is a single-level model characterized by three parameters: the level alignment of the frontier orbital with the Fermi energy of the leads and the electronic couplings to the leads. Variations in these parameters give a broad distribution (1 order of magnitude) in the observed conductance values, indicating that at the microscopic level both the hybridization with the metallic electrodes and the molecular electronic configuration can fluctuate. The low-temperature data show that these variations are due to abrupt changes in the configuration of the molecule in the junction leading to changes in either one of these parameters or both at the same time. The complementary information gained from different experiments is needed to build up a consistent and extended picture of the variability of molecular configurations, omnipresent in single-molecule studies. Knowledge of this variability can help one to better understand the behavior of molecules at the atomic level and at the metal-molecule interface in particular.

Thermodynamic modeling of HCl-H2O binary system with symmetric electrolyte NRTL model

Abstract A comprehensive thermodynamic model is developed for the HCl-H2O binary system based on the electrolyte nonrandom two-liquid activity coefficient model. Partial dissociation of electrolyte HCl to hydronium cation and chloride anion is incorporated to account for the true species in solution. Regressed from extensive thermodynamic data, the model parameters include molecule-molecule and molecule-electrolyte binary interactions parameters, as well as the chemical equilibrium constant parameters of the partial dissociation solution chemistry. The model accurately calculates all phase equilibria and thermodynamic properties including calorimetric properties with the concentration range from pure water to pure HCl and temperatures from 273 up to about 400 K.