The simulation of molecular descriptors of thiophene-based metal complexes has been performed using Gaussian 03 and Atomistic toolkit Virtual Nanolab (ATK-VNL) software. It is found that with respect to the obtained molecular descriptors, the molecules show distinct properties. The dimensions of the data set being large, the principal components (PC1 and PC2) have been obtained using principal component analysis (PCA). Analysis has been done for the Linear regression of principal components with first hyperpolarizability and second hyperpolarizability of the molecules. The results indicate that, of all the calculated molecular descriptors of thiophene-based metal complexes, the molecular energy (E), ionization energy (EI), and molecular dipole moment (D) plays a dominant role in determining their nonlinear optical properties i.e., the hyperpolarizability value, of the studied molecules. Also, the molecular descriptors, polarizability (P) and molar refractivity (MR), show considerable impact on the nonlinear optical properties of the studied molecules.