The effects of human activities have dramatically altered our natural environment. Greenhouse gas production, nutrient loading, land-use change and water consumption, to name a few, can dramatically affect ecosystem processes by changing the dynamics of global biogeochemical cycles. Currently, one of the most crucial scientific objectives is to gain an understanding of how drastically anthropogenic changes have altered our planet and what those changes mean for the future. In order to predict accurate scenarios of how global change will affect terrestrial ecosystems, the effects and controls over biogeochemical pools and fluxes, as incorporated into predictive global change models, must be carefully examined. This is not only necessary to guide scientific endeavor, but also to inform policymakers and to serve as a basis for advocacy of social change. By examining and understanding the dynamics of carbon, nitrogen, and other nutrient transformations scientists can take the pulse of an ecosystem and predict changes into the future. Many of these biogeochemical cycles are catalyzed by abundant and diverse microorganisms, the ‘‘gatekeepers’’ that populate every ecosphere. However, most global change models treat ‘‘microbes’’ as a single pool, responsible for a single rate of flux (ToddBrown et al. 2011; Treseder et al. 2011). Advances in microbial molecular techniques, and increasing integration between microbiological and ecological disciplines have provided overwhelming evidence that microbial communities are far more diverse than could ever have been imagined (e.g. Roesch et al. 2007; Fierer and Jackson 2006; Schloss and Handelsman 2006; Gans et al. 2005). With these insights comes a whole new body of evidence that microorganisms are not simple bags of enzymes, the abundance of which directly relate to the rate of a chemical reaction in the environment. On the contrary, we find that microorganisms are dynamic catalysts with a rich evolutionary history spread across all three domains of life. This life history shapes what metabolic capabilities microorganisms have, and how they respond to a diverse array of ecological constraints, including nutrient and dispersal limitation, competition, predation, cooperation and disturbance. Microorganisms themselves are affected by the global changes that occur, and shifts in microbial communities are inevitably linked, through the biogeochemical cycles they mediate, to the entire ecosystem. How K. M. Docherty (&) Department of Biological Sciences, Western Michigan University, 1903 West Michigan Ave, Kalamazoo, MI 49008, USA e-mail: kdochert8@gmail.com