Two root crops: carrot (Daucus carota) and spring onion (Allium fistulosum) and soil samples were selected from the agricultural fields located near Islamabad, Pakistan to determine their elemental content. Field soil speciation of the two crops was also carried out to analyse the correlation of the elements in field crop and soil. Concentrations of selected elements were evaluated in the leaf, stem, root and flowering part of the crops using flame atomic absorption spectrophotometry. The results showed that elements are mostly concentrated in soil rather than crop parts following the sequence Zn>Cu>Pb>Ni>Cr>Cd. Furthermore, soil speciation showed that Ni and Cr are more prevalent in the Fe–Mn oxide fraction, Zn and Cd as the carbonate bound fraction and Cu is found in the organic bound form. However, concentrations of Pb are similar across the carbonate, Fe–Mn oxide and organic bound fractions. The highest average concentration of Zn is found as the carbonate bound fraction (2.09 ± 0.005 mg kg−1) and Cu as the organic bound (1.51 ± 0.029 mg kg−1) in soil samples taken from the agricultural field of Daucus carota.