Abstract Background Left atrial appendage (LAA) closure (LAAc) has emerged as a safe and effective alternative to oral anticoagulation (OAC) for stroke prevention in patients with atrial fibrillation (AF) and contraindications to OAC. Case Summary A 61-year-old woman with permanent atrial fibrillation (AF) and a history of mitral surgery replacement with mechanical prosthesis was referred to our cardiology department to undergo left atrial appendage (LAA) closure (LAAc). The preoperative computed tomography (CT) revealed that the ostium of the left atrial appendage was close to the mitral prosthesis ring. As a result of the difficult LAA morphology a CT-image based virtual model was created, then a 3D printing model was prepared in our laboratory and procedure simulation was performed with the two different LAA occlusion devices (plug- vs. pacifier like models) to see which one was more suitable for the patient anatomy. Discussion In this case of complex LAAc in a patient with mechanical prosthetic mitral valve with the use of a 3D-printed model has guided prosthesis selection and device sizing reducing procedure time and complications.