Mitochondrial ND2 Research Articles

A new species of the Gekko japonicus group (Squamata: Gekkonidae) from Khammouane Province, central Laos.

A new species of the Gekko (Japonigekko) japonicus group from Khammouane Province, central Laos is described based on morphological characters and molecular evidence. Morphologically, Gekko khunkhamensis sp. nov. can be distinguished from the remaining congeners by a combination of the following characters: size moderate (SVL 69.775.2 mm); nares in contact with rostral; internasals absent; postmentals enlarged; interorbital scales between anterior corners of the eyes 31 or 32; dorsal tubercles absent; ventrals between mental and cloacal slit 181185; midbody scales 127138; ventral scales 4245; subdigital lamellae on first toe 13 or 14, on fourth toe 14 or 15; tubercles on upper surface of fore and hind limbs absent; precloacal pores absent in the male and females; postcloacal tubercles 2; tubercles absent on dorsal surface of tail base; subcaudals distinctly enlarged; dorsal surface of body with five dark grey bands, which become irregular posteriorly. Genetically, the new species is placed in a clade, consisting of G. bonkowskii, G. nadenensis, G. scientiadventura, G. sengchanthavongi, and G. thakhekensis and differs from other congeners by at least 13% in terms of pairwise distance based on a fragment of the mitochondrial ND2 gene.

A new hip-pocket frog from mid-eastern Australia (Anura: Myobatrachidae: Assa).

The hip-pocket frog (Assa darlingtoni), a small terrestrial myobatrachid frog found in mid-eastern Australia, has a highly derived, unusual, reproductive mode involving a unique form of male parental care. Males have subcutaneous pouches that open near the hip, and the developing tadpoles are carried in these pouches to post metamorphosis. It is found on several isolated mountain ranges in closed forest habitats, associated with high rainfall and temperate or sub-tropical climates. We established genetic relationships among specimens sampled across the range using phylogenetic analyses of thousands of single nucleotide polymorphisms (SNPs) from the nuclear genome and mitochondrial ND2 gene nucleotide sequences. These analyses uncovered two lineages that are genetically distinct in both nDNA and mtDNA analyses and that have low levels of divergence in male advertisement calls and are morphologically cryptic. Our data support separate species status for each lineage, based on the molecular genetic data. The first, which we name as a new species, Assa wollumbin sp. nov., is restricted to a single mountain, Wollumbin (= Mount Warning), the eroded cone of an ancient shield volcanothe Tweed Volcano. The second, the nominal species A. darlingtoni, has a wider distribution in five geographically disjunct subpopulations along 430 km of the Great Dividing Range in south-eastern Queensland and north-eastern New South Wales. The distributions of the two species closely approach within 15 km of each other on the central plug and rim of the caldera of the Tweed Volcano. Assa wollumbin sp. nov. meets the conservation criteria for Critically Endangered [A3(e), B2(a,b)]. When all subpopulations of A. darlingtoni are combined the conservation assessment is Endangered [A3(e), B2(a,b)]. Because of the fragmented nature of the distribution of A. darlingtoni, combined with the genetic evidence of concordant sub-structuring, we also conducted a conservation assessment on the five subpopulations. Two were assessed as Critically Endangered (DAguilar Range and Conondale/Blackall Ranges), and the remainder as Endangered (Dorrigo Plateau, McPherson Ranges, and Gibraltar Ranges/Washpool).

Taxonomic status of grey-headed Yellow Wagtails breeding in western China

BackgroundField studies from 2011 onwards have demonstrated the presence of a breeding population of Yellow Wagtails (Motacilla flava) in the Xinjiang Uygur Autonomous Region, China that is phenotypically distinct from known subspecies occurring in Asia. Here we describe the plumages and vocalisations of this population and discuss its taxonomic status.MethodsThe analysis of plumage is based on field studies and photos available online. Recordings of vocalisations are compared with recordings from other Yellow Wagtail populations, and differences are analysed based on sonograms. Mitochondrial DNA from one individual is compared to other Yellow Wagtail taxa.ResultsUnlike M. flava subspecies breeding in or near Xinjiang, males in the studied population show a blue-grey head without prominent white supercilium, being most similar to the widely disjunct M. f. cinereocapilla. They differ from the similarly widely allopatric M. f. thunbergi, which might occur as a migrant or vagrant in Xinjiang, by on average cleaner yellow breast and more extensive white on the throat, and from the widely disjunct M. f. plexa and M. f. macronyx, which might also occur on migration in that area, by softer contact calls and slower pace of song. Females are similar to female M. f. feldegg in plumage. The mitochondrial ND2 tree shows the single sample from Xinjiang to be nested in the clade of western Yellow Wagtail taxa.ConclusionWe discuss whether the Xinjiang breeding population could represent an intergrade between subspecies breeding nearby, or whether it is better regarded as a separate as yet unrecognized subspecies. We argue that the localization of its apparent range in relation to other subspecies along with fairly consistent male and female plumages suggest that it is more likely to represent an undescribed taxon, but conclude that more research is needed to firmly establish its status.

A new insular species of the Cyrtodactylus pulchellus group (Reptilia, Gekkonidae) from Tarutao Island, southern Thailand revealed by morphological and genetic evidence

The bent-toed geckos of the Cyrtodactyluspulchellus group are widely distributed along the Thai-Malay Peninsula. Although taxonomic and phylogenetic studies of this species group have been continuously conducted, only some populations from Thailand have been included, resulting in hidden diversity within this group. In this study, we used morphological and molecular data to clarify the taxonomic status and describe a new population from Tarutao Island, Satun Province, southern Thailand. Cyrtodactylusstellatussp. nov. can be distinguished from its congeners by the combination of the following morphological characters: body size; tuberculation; number of dark body bands, ventral scales, and femoroprecloacal pores in males; presence of precloacal pores in females; and scattered pattern on dorsum. Phylogenetic analyses of the mitochondrial ND2 gene recovered the new species as the sister species to C.astrum, with an uncorrected pairwise divergence of 9.78–12.37%. Cyrtodactylusstellatussp. nov. is currently only known from Tarutao Island, Thailand. The discovery of this species suggests that the diversity within the C.pulchellus group remains underestimated and future exploration of unsurveyed areas are needed to further the understanding of this group and its geographic range.

The complete mitochondrial genome of Choroterpes (Euthralus) yixingensis (Ephemeroptera: Leptophlebiidae) and its mitochondrial protein-coding gene expression under imidacloprid stress.

As one of the most common benthic invertebrates in freshwater, mayflies are very sensitive to changes in water quality and have high requirements for the water environment to allow their nymphs to successfully live and grow. Neonicotinoids, such as imidacloprid, can enter fresh water and pollute the aquatic environment. The present study had two goals: (1) investigate imidacloprid effects on mayfly larvae Choroterpes (Euthralus) yixingensis, and (2) contribute to the phylogenetic status of Ephemeroptera that has always been controversial. Nymphs were collected from Jinhua, China and exposed to different concentrations imidacloprid (5, 10, 20, and 40μg/L) in the laboratory. Survival of C. yixingensis nymphs decreased as a function of time and imidacloprid concentration with only~55% survival after 72h exposure to 40μg/L imidacloprid. After culture under 40μg/L imidacloprid for 24h, the steady state transcript levels of mitochondrial COX3, ND4 and ND4L genes were reduced to just 0.07±0.11, 0.30±0.16, and 0.28±0.13 as compared with respective control values (P<0.01). Steady state transcript levels of ND4 and ND4L were also significantly reduced in a dose-dependent manner (P<0.05), suggesting that the steady state transcript pattern of these genes in mayfly nymphs can change in response to different levels of environmental contamination. Hence, the mitochondrial protein-coding genes of mayflies could potentially be developed as biomarkers for water ecotoxicity monitoring in the future. In addition, we used the mitochondrial genome sequence of C. yixingensis for an assessment of the phylogenetic tree of Ephemeroptera. The monophyly of Leptophlebiidae was supported and showed that Leptophlebiidae was a sister group to the clade (Baetidae+Caenidae).

The relationship between mitochondrial ND5 gene polymorphisms and in vitro embryo production in Sanjabi sheep.

The aim of this study was to investigate mitochondrial ND5 gene polymorphisms and their relationship with in vitro maturation (IVM) and in vitro culture (IVC) of Sanjabi sheep. Blood and ovarian samples of adult ewes were obtained from a local slaughterhouse. For each ovarian sample, cumulus-oocyte complexes larger than 3 mm in diameter were aspirated from follicles, and their IVM and IVC rates were recorded. A 666-bp fragment of the ND5 gene was amplified using the polymerase chain reaction. The samples were genotyped using a modified single-stranded conformation polymorphism (SSCP) method, and an association study was conducted with IVM and IVC rates. Six different SSCP patterns, designated A, B, C, D, E and F with respective frequencies of 8, 47, 4, 4, 32 and 5%, respectively, were observed. According to the results of association analysis, there was no significant association between the ND1 gene polymorphisms and the IVM and IVC rates (P > 0.05).

Resolving the origins of invertebrate colonists in the Yangtze River Estuary with molecular markers: Implications for ecological connectivity.

Understanding connectivity over different spatial and temporal scales is fundamental for managing of ecological systems. However, controversy exists for wintertime ecological connectivity between the Yangtze River Estuary (YRE) and inner southwestern Yellow Sea. Here, we investigated ecological connectivity between the YRE and inner southwestern Yellow Sea in wintertime by precisely pinpointing the source of the newly colonized populations of a winter‐spawning rocky intertidal invertebrate, Littorina brevicula (Philippi, 1844), on artificial structures along the coast of the Yangtze River Delta (YRD) using mitochondrial ND6 sequences and microsatellite data. Clear phylogeographic and genetic differentiation were detected between natural rocky populations south and north of the YRE, which resulted from the lack of hard substrate for rocky invertebrates in the large YRD coast. For the newly colonized populations on the coast of YRD, most individuals (98%) to the south of ~33.5°N were from natural rocky populations to the south of the YRE and most of those (94%) to the north of ~33.5°N were from the northern natural rocky populations, which demonstrated strong ecological connectivity between the inner southwestern Yellow Sea and the YRE in winter time. We presented the first genetic evidence that demonstrated a northward wintertime coastal current in the inner southwestern Yellow Sea, and precisely illustrated the boundary of the coastal current recently proposed by numerical experiment. These results indicated that the YRE serves as an important source of materials and energy for the inner southwestern Yellow Sea in winter, which can be crucial for the function of the Yellow Sea ecosystem.

Taxonomic Revision of Scaly-toed Geckos (Reptilia: Gekkonidae: Lepidodactylus) in the Northern Philippines, with Descriptions of Four New Species

Recent higher level phylogenetic analyses of gekkonid lizards of the genus Lepidodactylus uncovered an array of unrecognized species diversity, particularly within the Philippine archipelago. Novel phylogenetic analyses of multilocus data sets suggest that as many as five, previously undescribed, species-level lineages of Scaly-toed Geckos occur in just the northern portions of the archipelago. Here, we evaluate Lepidodactylus species diversity in the Lepidodactylus yami–balioburius clade and describe four new forest species from Luzon Island and surrounding minor island groups. Interestingly, these species are the first endemic Lepidodactylus taxa described from Luzon proper and peripheral islands. In this first review of Philippine Scaly-toed Gecko diversity in nearly half a century, we use a suite of morphological characters along with molecular data to delimit evolutionary lineages. All species described in this paper can be distinguished from congeners by an array of discrete external traits; all are also monophyletic groups, separated in our phylogenetic analyses of the mitochondrial ND2 gene. This study increases significantly the number of known Scaly-toed Geckos in the Philippines from 7 to 11, which is likely still an underestimate of the species diversity in this understudied clade.

Taxonomic revision of south-eastern Australian giant burrowing frogs (Anura: Limnodynastidae: Heleioporus Gray).

The rarely encountered giant burrowing frog, Heleioporus australiacus, is distributed widely in a variety of sclerophyll forest habitats east of the Great Dividing Range in south-eastern Australia. Analyses of variation in nucleotide sequences of the mitochondrial ND4 gene and thousands of nuclear gene SNPs revealed the presence of two deeply divergent lineages. Multivariate morphological comparisons show the two lineages differ in body proportions with > 91% of individuals being correctly classified in DFA. The two lineages differ in the number and size of spots on the lateral surfaces and the degree by which the cloaca is surrounded by colour patches. The mating calls are significantly different in number of pulses in the note. The presence of a F2 hybrid in the area where the distribution of the two taxa come into closest proximity leads us to assign subspecies status to the lineages, as we have not been able to assess the extent of potential genetic introgression. In our sampling, the F2 hybrid sample sits within an otherwise unsampled gap of ~90km between the distributions of the two lineages. The nominate northern sub-species is restricted to the Sydney Basin bioregion, while the newly recognised southern subspecies occurs from south of the Kangaroo Valley in the mid-southern coast of New South Wales to near Walhalla in central Gippsland in Victoria. The habitat of the two subspecies is remarkably similar. Adults spend large portions of their lives on the forest floor where they forage and burrow in a variety of vegetation communities. The southern subspecies occurs most commonly in dry sclerophyll forests with an open understory in the south and in open forest and heath communities with a dense understory in the north of its distribution. The northern subspecies is also found in dry open forests and heaths in association with eroded sandstone landscapes in the Sydney Basin bioregion. Males of both taxa call from both constructed burrows and open positions on small streams, differing from the five Western Australian species of Heleioporus where males call only from constructed burrows. Using the IUCN Red List process, we found that the extent of occupancy and area of occupancy along with evidence of decline for both subspecies are consistent with the criteria for Endangered (A2(c)B2(a)(b)).

Function of four mitochondrial genes in fumigation lethal mechanisms of Allyl Isothiocyanate against Sitophilus zeamais adults

Allyl isothiocyanate (AITC) is a promising alternative to chemical fumigants, and mitochondrial dysfunction has been proposed to play a crucial role in its lethal mechanisms; however, the specific lethal mechanisms of AITC remain unknown. Four mitochondrial electron transport chain genes, nd5, nd6, cox1, and cox5, were selected from adult Sitophilus zeamais and processed with RNA interference experiments. Then, the biochemical and biophysical effects were compared between double-stranded RNA (dsRNA)-mediated insects and wild-type insects after AITC fumigation at the concentration of LC50 values. The bioactivity of AITC against dsnd6-mediated insects increased, while the bioactivity against dcox1-mediated insects decreased. Compared with the wild-type insects, the increase of reactive oxygen species (ROS) levels by AITC in mitochondria from dsnd6-mediated insects increased by 18.95%, while that of dscox1-mediated insects decreased by 27.45%. The effects of AITC on mRNA expression levels of detoxifying enzymes including CAT (down-regulation effect) and CuZnSOD (overexpression effect) partly recovered in the dsnd5-mediated insects, while a greater effect was observed for dscox1-mediated insects. Molecular docking results indicated that ASN511 at the cox1 subunit was the binding site of AITC by one hydrogen bond, with a bond distance of 2.1 Å. These findings provide insight for further applications of AITC and could provide a novel strategy to investigate lethal mechanisms of insecticides.

Mitochondrial Differentiation and Biogeography of Rock Nuthatches

Rock Nuthatches comprise two morphologically similar species: Western Rock Nuthatch Sitta neumayer and Eastern Rock Nuthatch Sitta tephronota, with several subspecies within each species. These two species are closely related, and the two together are often considered an offshoot of the Sitta europaea group. The Western Rock Nuthatch is distributed across the Balkans to the Caucasus and Iran while the Eastern Rock Nuthatch is distributed across Eastern Anatolia, Iran, Afghanistan, Turkmenistan and Tajikistan. Using partial mitochondrial ND2 and ND3 gene sequences from populations throughout the distribution ranges and ecological niche modelling, we investigated the genetic structure and biogeographic history of these bird species. Two well-differentiated and supported clades in each species indicated a reciprocal monophyly with no gene flow between birds in the Zagros Mountains and other populations. Ecological niche modelling suggested population contraction in their potential habitat during the Last Glacial Maximum. The genetic differentiation in Zagros Mountains indicates that the post-glacial colonization of most of the Rock Nuthatch distribution range occurred from refugia located elsewhere than the Zagros Mountains. Given that Rock Nuthatches in the Zagros Mountains have long constituted an isolated population, there may be two phylogenetic species within each Rock Nuthatch species. Further genetic studies should be performed for taxonomic clarification.

Genetic diversity of Echinococcus granulosus sensu stricto infecting humans in western Algeria.

Human cystic echinococcosis is a zoonosis due to the flat worm Echinococcus granulosus sensu lato. The disease remains a major public health problem in Northern Africa. Molecular typing enables a better understanding of the parasite circulation from animals to humans. In this study, we investigated the genotypic diversity of 46 Echinococcus granulosus isolates collected from humans in the western part of Algeria by the mean of partial sequences of 4 mitochondrial loci, namely cox1a, cox1b, nd3, and atp6. Nucleotide polymorphism ranges from 0.6 (nd3) to 2.7% (cox1a). Eight alleles had not been previously reported. Multilocus analysis showed that all the isolates were from the Echinococcus granulosus sensu stricto (G1 genotype). Nineteen different haplotypes made of the concatenation of 4 sequenced loci were observed, the most common type clustering 13 isolates (36.1%). Twelve of these haplotypes had never been described previously and fifteen (41.7%) haplotypes were represented by only one isolate. Using sequences from this study and others retrieved from the GenBank database, any clustering either according to the geographic origin within Algeria or according to the human or animal origin of the isolates could be demonstrated supporting that genotype G1 population genetics has been shaped by intensive animal breeding.

On the systematics and the phylogenetic position of the poorly known, montane dragon-lizard species Pseudocalotes austeniana (Annandale, 1908) (Squamata, Agamidae, Draconinae)

The montane agamid speciesPseudocalotes austenianahas had a complicated taxonomic history, as the species was initially described as a member of the genusSaleaGray, 1845. Later, the species was placed in a monotypic genusMictopholisSmith, 1935, which was erected only to include this species; however, the species was later on transferred to the genusPseudocalotesFitzinger, 1843, owing to the morphological similarities, and lack of strong characters to diagnose the genusMictopholis. Nonetheless, its precise phylogenetic and systematic position has remained unresolved due to the lack of molecular sequence data. During a herpetological expedition to Arunachal Pradesh, specimens ofP. austenianawere collected from the hills near the type locality. The mitochondrial 16S rRNA, ND2 and ND4, and the nuclear RAG1 regions were subjected to molecular phylogenetics. Maximum Likelihood and Bayesian Inference gene trees revealed thatP. austenianais a member of the subfamily Draconinae. The analyses showed that the genusPseudocalotesis polyphyletic, andP. austenianawas embedded within the genusJapaluraGray, 1853 sensu stricto. We here, thus, propose to transfer the speciesP. austenianato the genusJaplaura, asJapalura austenianacomb. nov.Biogeographic and evolutionary significance of the findings are discussed.

Development of Peptide-Based Nanoparticles for Mitochondrial Plasmid DNA Delivery.

A mitochondrion is a cellular organelle able to produce cellular energy in the form of adenosine triphosphate (ATP). As in the nucleus, mitochondria contain their own genome: the mitochondrial DNA (mtDNA). This genome is particularly susceptible to mutations that are at the basis of a multitude of disorders, especially those affecting the heart, the central nervous system and muscles. Conventional clinical practice applied to mitochondrial diseases is very limited and ineffective; a clear need for innovative therapies is demonstrated. Gene therapy seems to be a promising approach. The use of mitochondrial DNA as a therapeutic, optimized by peptide-based complexes with mitochondrial targeting, can be seen as a powerful tool in the reestablishment of normal mitochondrial function. In line with this requirement, in this work and for the first time, a mitochondrial-targeting sequence (MTS) has been incorporated into previously researched peptides, to confer on them a targeting ability. These peptides were then considered to complex a plasmid DNA (pDNA) which contains the mitochondrial gene ND1 (mitochondrially encoded NADH dehydrogenase 1 protein), aiming at the formation of peptide-based nanoparticles. Currently, the ND1 plasmid is one of the most advanced bioengineered vectors for conducting research on mitochondrial gene expression. The formed complexes were characterized in terms of pDNA complexation capacity, morphology, size, surface charge and cytotoxic profile. These data revealed that the developed carriers possess suitable properties for pDNA delivery. Furthermore, in vitro studies illustrated the mitochondrial targeting ability of the novel peptide/pDNA complexes. A comparison between the different complexes revealed the most promising ones that complex pDNA and target mitochondria. This may contribute to the optimization of peptide-based non-viral systems to target mitochondria, instigating progress in mitochondrial gene therapy.

Mitochondrial DNA phylogeography of the Guizhou odorous frog: limited population genetic structure and evidence for recent population size expansion

The Guizhou odorous frog Odorrana kweichowensis is endemic to Guizhou Province, China. In this study, a comparative analysis of the mitochondrial COI and ND2 gene sequences was performed to examine genetic diversity in 109 individuals from ten localities across the geographic range of the species. Haplotype diversity and nucleotide diversity were 0.576 and 0.00055, respectively. Phylogenetic analyses almost nested all haplotypes into one lineage. AMOVA indicated that total variation was mainly derived from variation within individual populations. Neutral tests indicated that a recent expansion occurred in the total population. Fst estimations indicated that genetic divergence was not correlated with geographic distance. Accordingly, the species probably experienced a recent population expansion, and there no obvious population genetic structure is apparent. The findings provide useful information for the conservation of this species.

A new species of Dixonius (Squamata: Gekkonidae) from Vientiane Capital, Laos.

A new species of the gekkonid genus Dixonius is described from Huaysorn-Huaysua village, Nasaithong District, Vientiane Capital, Laos. The new species can be distinguished from all other species by a combination of the following characters: maximum SVL 47.1 mm; 1921 longitudinal rows of dorsal tubercles at midbody; 2326 longitudinal rows of ventrals across the abdomen; 7 or 8 supralabials, 6 in mid-orbital position; 5 or 6 infralabials; 5 or 6 precloacal pores in males, femoral pores lacking; precloacal and femoral pores absent in females; a canthal stripe running from rostrum through the eye and terminating at back of head; dorsum brown with irregular dark marks. In phylogenetic analyses, the species is recovered as the sister taxon to D. siamensis, which occurs in Laos, Thailand, and Vietnam. Genetically, the two species are approximately 9.4% divergent from each other based on the complete mitochondrial ND2 gene with six partial or complete adjacent tRNAs. It is the 12th species known in the genus Dixonius and the second Dixonius species described from Laos.

Two cases of a previously undocumented New World warbler hybrid (Setophaga magnolia × S. ruticilla) in eastern North America

This study confirms 2 independent accounts of previously undocumented hybridization between Magnolia Warbler (Setophaga magnolia) and American Redstart (S. ruticilla) through morphological and genetic analyses. Hybrids were discovered in 2 locations in eastern North America: Ottawa County, Ohio, USA, and Laval, Québec, Canada. The hybrids, one male and one female, showed plumage intermediate to both parental species. White eye arcs, yellow wash on the belly, narrow white wing bars, and black lores reflect the Magnolia Warbler parentage, while dark yellow-orange coloration on the sides of the breast and under the wing, yellow on the base of most of the secondaries, and pale yellow patches on the outer tail feathers reflect American Redstart. Sequences of the mitochondrial ND2 gene, the Z-linked muscle-specific kinase (MUSK) gene, and the myoglobin intron-2 (MYO2) confirmed maternal ancestry from Magnolia Warblers and paternal ancestry in American Redstarts for both hybrids. There is ample opportunity for this species pair to hybridize; they are congeners with broad range overlap, similar habitat preferences, song structure similarities, and plumage similarities in some age categories. Despite these conditions and the unusually high rate of hybridization within the Parulidae, this hybrid combination has never been documented before, and we suggest that this is a rare event that may be expected anywhere in their broad, overlapping ranges.

Postoperative Rise of Circulating Mitochondrial DNA Is Associated with Inflammatory Response in Patients following Pancreaticoduodenectomy

Introduction: Accumulation of plasma mitochondrial DNA (mtDNA) following severe trauma has been shown to correlate with the development of systemic inflammatory response syndrome (SIRS) and may predict mortality. Our objective was to investigate the relationship between levels of circulatory mtDNA following pancreaticoduodenectomy (PD) and the postoperative course. Methods: Levels of plasma mtDNA were assessed by real-time PCR of the mitochondrial genes ND1 and COX3 in 23 consecutive patients who underwent PD 1 day prior to surgery, within 8 h after surgery, and on postoperative day (POD)1 and POD5. The abundance of mtDNA was assessed relative to preoperative levels and in relation to parameters reflecting the postoperative clinical course. Results: When pooled for all patients, the circulating mtDNA levels were significantly increased after surgery. However, while a significant (at least >2-fold and up to >20-fold) rise was noted in 11 patients, no change in mtDNA levels was noted in the other 12 following surgery. Postoperative rise in circulating mtDNA was associated with an increased rate of postoperative fever until day 5, decreased hemoglobin and albumin levels, and increased white blood cell counts. These patients also suffered from increased rates of delayed gastric emptying. No significant differences were demonstrated in other postoperative parameters. Conclusion: Circulating mtDNA surge is associated with an inflammatory response following PD and may potentially be used as an early marker for postoperative course. Studies of larger patient cohorts are warranted.

Clinical and molecular features of two diabetes families carrying mitochondrial ND1 T3394C mutation.

Mutations in mitochondrial DNA (mtDNA) are found to be associated with type 2 diabetes mellitus (T2DM). However, the molecular pathogenesis of these mutations in T2DM is still poorly understood. In this study, we report here the molecular features of two Han Chinese families with maternally transmitted T2DM. The matrilineal relatives are undergoing clinical, biochemical, genetic evaluations, and molecular analysis. Furthermore, the entire mitochondrial genomes of these matrilineal relatives are screened by PCR-Sanger sequencing. The age at onset of T2DM of these participants varies from 28 to 71years, with an average of 43years. Molecular analysis of mitochondrial genomes identifies the existence of ND1 T3394C mutation in both families, together with sets of variants belonging to mitochondrial haplogroup Y2 and M9a. The m.T3394C mutation is localized at very conserved tyrosine at position 30 of ND1, may result the failure in ND1 mRNA metabolism, and lead to mitochondrial dysfunction. Moreover, sequence analysis of matrilineal relatives in Family 1 identifies the m.A14693G mutation which occurs in the TΨC-loop of tRNAGlu (position 54), and is critical to the structural formation and stabilization of this tRNA. Thus, m.A14693G mutation may cause the impairment in tRNA metabolism, thereby worsens the mitochondrial dysfunction caused by ND1 T3394C mutation. However, no functional mtDNA variants are identified in Family 2 which suggest that mitochondrial haplogroup may not play an important role in diabetes expression. Our study indicates that mitochondrial ND1 T3394C mutation is involved in the pathogenesis of maternally inherited T2DM in these families.

A combined molecular and morphological phylogeny of the Loricariinae (Siluriformes: Loricariidae), with emphasis on the Harttiini and Farlowellini.

We present a combined molecular and morphological phylogenetic analysis of the Loricariinae, with emphasis on the Harttiini (Cteniloricaria, Harttia, and Harttiella) and Farlowellini (Aposturisoma, Farlowella, Lamontichthys, Pterosturisoma, Sturisoma, and Sturisomatichthys). Character sampling comprised seven molecular markers (the mitochondrial Cytb, nd2, 12S and 16S, and the nuclear MyH6, RAG1 and RAG2) and 196 morphological characters. A total of 1,059 specimens, and 159 tissue samples were analized, representing 100 species. A Bayesian Inference analysis was performed using the concatenated data matrix, which is comprised of 6,819 characters. The Loricariinae were found to comprise the tribes (Hartiini (Loricariini, Farlowellini)), the latter two elevated from subtribes. A Maximum Parsimony analysis was also performed using the same data matrix in order to reveal phenotypical synapomorphies to diagnose each clade. Two MP trees were found with a length of 14,704 steps, consistency index of 0.29 and retention index of 0.61, which were summarized in a strict consensus tree. Harttiini includes (Harttiella (Cteniloricaria, Harttia), and Farlowellini includes (Lamontichthys (Pterosturisoma (Sturisoma (Sturisomatichthys, Farlowella)))). Aposturisoma was recovered nested within Farlowella and is synonymyzed to the latter. Sturisoma was corroborated as strictly cis-Andean, while Sturisomatichthys encompasses, besides the valid species already included in the genus, the trans-Andean species once belonging to Sturisoma sensu lato. Identification keys and phylogenetic diagnoses of family-group taxa and genera of both the Harttiini and the Farlowellini are provided.