Nitrate (NO3–) enrichment in rivers over the last four decades has potentially shifted how coastal ecosystems process nitrogen (N). Shifts in N dynamics may be particularly significant in coastal deltaic floodplains when sediments are inundated during river flood stage as this may change the fate of NO3– transported to the coastal ocean. We evaluated the relative importance of denitrification, dissimilative nitrate reduction to ammonium (DNRA), and anaerobic ammonium oxidation (anammox) in intact sediment cores of Wax Lake Delta (WLD) using continuous flow-through system. We manipulated this experimental system with two concentrations of riverine NO3– (lower concentration at 5 μM and ambient concentration at 100 μM) to test how nitrate-enriched waters may modify N cycling in coastal deltaic floodplains. Inundated sediments in a coastal deltaic floodplain removed bio-reactive N as a function of sediment organic matter (SOM) concentrations, indicating how N dynamics vary as a result of deltaic succession. Direct denitrification was the dominant N pathway in inundated sediments in WLD, which was several times greater than coupled nitrification-denitrification, DNRA, and anammox. Gross denitrification (direct denitrification + coupled nitrification-denitrification) rates generally increased with SOM concentrations and ranged from 4 to 12 μmol N m–2 h–1 under lower NO3– enrichment (5 μM) and 68 to 276 μmol N m–2 h–1 under higher NO3– enrichment (100 μM). Most of these changes in N fluxes with SOM and NO3– enrichment resulted from the increase in direct denitrification rates rather than coupled nitrification-denitrification rates. DNRA rates varied from 0 to 65 μmol N m–2 h–1, and the relative significance of DNRA increased as a percentage of total NO3– reduction (%DNRA) with increasing ratio of organic carbon to NO3– concentrations (OC/NO3–). Anammox rates increased among sites as SOM increased, but rates were lower from 0.0 to 38 μmol N m–2 h–1. The dominance of direct denitrification and increased anammox rates with SOM concentrations indicate that dynamic deltaic floodplains can permanently remove bio-reactive N in the proximal zone of river deposition of tidal freshwater wetlands.