Minimum Redundancy Research Articles

Identification of Predictors of Sarcopenia in Older Adults Using Machine Learning: English Longitudinal Study of Ageing

Background: After its introduction in the ICD-10-CM in 2016, sarcopenia is a condition widely considered to be a medical disease with important consequences for the elderly. Considering its high prevalence in older adults and its detrimental effects on health, it is essential to identify its risk factors to inform targeted interventions. Methods: Taking data from wave 2 of the ELSA, using ML-based methods, this study investigates which factors are significantly associated with sarcopenia. The Minimum Redundancy Maximum Relevance algorithm has been used to allow for an optimal set of features that could predict the dependent variable. Such a feature is the input of a ML-based prediction model, trained and validated to predict the risk of developing or not developing a disease. Results: The presented methods are suitable to identify the risk of acquired sarcopenia. Age and other relevant features related with dementia and musculoskeletal conditions agree with previous knowledge about sarcopenia. The present classifier has an excellent performance since the “true positive rate” is 0.81 and the low “false positive rate” is 0.26. Conclusions: There is a high prevalence of sarcopenia in elderly people, with age and the presence of dementia and musculoskeletal conditions being strong predictors. The new proposed approach paves the path to test the prediction of the incidence of sarcopenia in older adults.

Multimodal AI/ML for discovering novel biomarkers and predicting disease using multi-omics profiles of patients with cardiovascular diseases

Cardiovascular diseases (CVDs) are complex, multifactorial conditions that require personalized assessment and treatment. Advancements in multi-omics technologies, namely RNA sequencing and whole-genome sequencing, have provided translational researchers with a comprehensive view of the human genome. The efficient synthesis and analysis of this data through integrated approach that characterizes genetic variants alongside expression patterns linked to emerging phenotypes, can reveal novel biomarkers and enable the segmentation of patient populations based on personalized risk factors. In this study, we present a cutting-edge methodology rooted in the integration of traditional bioinformatics, classical statistics, and multimodal machine learning techniques. Our approach has the potential to uncover the intricate mechanisms underlying CVD, enabling patient-specific risk and response profiling. We sourced transcriptomic expression data and single nucleotide polymorphisms (SNPs) from both CVD patients and healthy controls. By integrating these multi-omics datasets with clinical demographic information, we generated patient-specific profiles. Utilizing a robust feature selection approach, we identified a signature of 27 transcriptomic features and SNPs that are effective predictors of CVD. Differential expression analysis, combined with minimum redundancy maximum relevance feature selection, highlighted biomarkers that explain the disease phenotype. This approach prioritizes both biological relevance and efficiency in machine learning. We employed Combination Annotation Dependent Depletion scores and allele frequencies to identify variants with pathogenic characteristics in CVD patients. Classification models trained on this signature demonstrated high-accuracy predictions for CVD. The best performing of these models was an XGBoost classifier optimized via Bayesian hyperparameter tuning, which was able to correctly classify all patients in our test dataset. Using SHapley Additive exPlanations, we created risk assessments for patients, offering further contextualization of these predictions in a clinical setting. Across the cohort, RPL36AP37 and HBA1 were scored as the most important biomarkers for predicting CVDs. A comprehensive literature review revealed that a substantial portion of the diagnostic biomarkers identified have previously been associated with CVD. The framework we propose in this study is unbiased and generalizable to other diseases and disorders.

Development of New Electricity System Marginal Price Forecasting Models Using Statistical and Artificial Intelligence Methods

The System Marginal Price (SMP) is the cost of the last unit of electricity supplied to the grid, reflecting the supply–demand equilibrium and serving as a key indicator of market conditions. Accurate SMP forecasting is essential for ensuring market stability and economic efficiency. This study addresses the challenges of SMP prediction in Turkey by proposing a comprehensive forecasting framework that integrates machine learning, deep learning, and statistical models. Advanced feature selection techniques, such as Minimum Redundancy Maximum Relevance (mRMR) and Maximum Likelihood Feature Selector (MLFS), are employed to refine model inputs. The framework incorporates time series methods like Multilayer Perceptron (MLP), Long Short-Term Memory (LSTM), Bidirectional LSTM (Bi-LSTM), and Convolutional LSTM (ConvLSTM) to capture complex temporal patterns, alongside models such as Support Vector Machine (SVM), Extreme Gradient Boosting (XGBoost), and Extreme Learning Machine (ELM) for modeling non-linear relationships. Model performance was evaluated using the Mean Absolute Percentage Error (MAPE) across regular weekdays, weekends, and public holidays. XGBoost combined with MLFS consistently achieved the lowest MAPE values, demonstrating exceptional accuracy and robustness. Among all of the models, XGBoost combined with MLFS consistently achieved the lowest MAPE values, demonstrating superior accuracy and robustness. The results highlight the inadequacy of traditional models like ARIMA and SARIMA in capturing non-linear and highly volatile patterns, reinforcing the necessity of using advanced techniques for effective SMP forecasting. Overall, this study presents a novel and comprehensive approach tailored for complex electricity markets, significantly enhancing predictive reliability by incorporating economic indicators and sophisticated feature selection methods.

Preoperative Prediction of Lymph Node Metastases in Nonfunctional Pancreatic Neuroendocrine Tumors Using a Combined CT Radiomics-Clinical Model.

PanNETs are a rare group of pancreatic tumors that display heterogeneous histopathological and clinical behavior. Nodal disease has been established as one of the strongest predictors of patient outcomes in PanNETs. Lack of accurate preoperative assessment of nodal disease is a major limitation in the management of these patients, in particular those with small (< 2cm) low-grade tumors. The aim of the study was to evaluate the ability of radiomic features (RF) to preoperatively predict the presence of nodal disease in pancreatic neuroendocrine tumors (PanNETs). An institutional database was used to identify patients with nonfunctional PanNETs undergoing resection. Pancreas protocol computed tomography was obtained, manually segmented, and RF were extracted. These were analyzed using the minimum redundancy maximum relevance analysis for hierarchical feature selection. Youden index was used to identify the optimal cutoff for predicting nodal disease. A random forest prediction model was trained using RF and clinicopathological characteristics and validated internally. Of the 320 patients included in the study, 92 (28.8%) had nodal disease based on histopathological assessment of the surgical specimen. A radiomic signature based on ten selected RF was developed. Clinicopathological characteristics predictive of nodal disease included tumor grade and size. Upon internal validation the combined radiomics and clinical feature model demonstrated adequate performance (AUC 0.80) in identifying nodal disease. The model accurately identified nodal disease in 85% of patients with small tumors (< 2cm). Non-invasive preoperative assessment of nodal disease using RF and clinicopathological characteristics is feasible.

Diagnostic precision in thyroid-associated ophthalmopathy using multi-center radiomics with 99mTc-DTPA SPECT/CT

To explore the performance of 99mTc-diethylene triaminepentaacetic acid (DTPA) SPECT/CT texture analysis in evaluating the activity of thyroid-associated ophthalmopathy (TAO) . This retrospective study examined 115 TAO patients from a single institution as an internal cohort and 58 TAO patients from another institution as an external validation set. Patients in the internal cohort were randomly divided into training (n = 81) and internal validation sets (n = 34). Radiomics signatures were constructed with the minimal redundancy maximal relevance and least absolute shrinkage and selection operator algorithms in training set. Multivariate logistic regression analysis was used to develop a clinical model and a combined clinical–radiomics model. Diagnostic performance of models was evaluated using receiver operating characteristic curve analysis, calibration curves and decision curve analysis. Compared with CT and SPECT radiomics models, Rad-scoreSPECT/CT demonstrated the best performance with areas under the receiver operating characteristic curve of 0.94 and 0.91 in the training and test sets, respectively. The combined clinical-radiomics model exhibited significantly better performance in evaluating TAO activity. Our results demonstrate the validity of a multimodal radiomic model of 99mTc-DTPA-SPECT/CT to assess TAO activity. The combined clinical-radiomics model exhibited significantly better diagnostic performance than the clinical model.

A computed tomography‑based radio‑clinical model for the prediction of microvascular invasion in gastric cancer.

The objective of the present study was to build and validate a radio-clinical model integrating radiological features and clinical characteristics based on information available before surgery for prediction of microvascular invasion (MI) in gastric cancer. The retrospective study included a cohort of 534 patients (n=374 for the training set and n=160 for the test set) who were diagnosed with gastric cancer. All patients underwent contrast-enhanced computed tomography within one month before surgery. The focal area was mapped by ITK-SNAP. Radiomics features were extracted from portal venous phase CT images. Principal component analysis was used to reduce dimensionality, maximum relevance minimum redundancy, and least absolute shrinkage and selection operator to screen features most associated with MI. The radiomics signature was subsequently computed based on the coefficient weight assigned to it. The independent risk factors for MI of gastric cancer were determined using univariate analysis and multivariate logistic regression analysis. Univariate logistic regression analysis was used to assess the association between clinical characteristics and MI status. A radio-clinical model was constructed by employing multi-variable logistic regression analysis, incorporating radiomic features with clinical characteristics. Receiver operating characteristic (ROC) curve analysis, decision curve analysis (DCA) and calibration curves were employed for the analysis and evaluation of the model's performance. The radiomics signature model had moderate recognition ability, with an area under ROC curve (AUC) of 0.77 for the training set and 0.73 for the test set. The radio-clinical model, consisting of rad-score and clinical features, could well discriminate the training set and test set (AUC=0.88 and 0.80, respectively). The calibration curves and DCA further validated the favorable fit and clinical applicability of the radio-clinical model. In conclusion, the radio-clinical model combining the radiomics signature and clinical characteristics may be used to individually predict MI in gastric cancer to aid in the development of a clinical treatment strategy.

Adaptive feature fusion and disturbance correction for accurate remaining useful life prediction of rolling bearings

As a key component in the transmission system of high-speed trains, bearings need to withstand certain loads while rotating at high speeds. Once a failure occurs, it can directly affect the safety of train operations. Therefore, it is of great significance to establish a reliable remaining useful life model to ensure train operation safety. Addressing the problems of redundant features in the existing multi-feature fusion process, which affects diagnostic performance, and the spurious fluctuations in the fusion features, which cause inaccurate determination of the start fault time and lead to low prediction accuracy of remaining useful life, we propose a method based on adaptive feature fusion and the autoregressive integrated moving average model for rolling bearing prediction. Firstly, features from the time domain, frequency domain, and entropy are extracted. A feature selection mechanism with minimum redundancy is constructed to screen the optimal sensitive feature set. Secondly, based on adaptive feature fusion, the optimal sensitive feature set is dynamically fused, and the spurious fluctuations of the health index are corrected using linear regression and the 3σ principle. Next, a bottom-up time series segmentation method is employed to divide the health status of the Improved Health Indicators. Finally, a remaining useful life prediction model based on the autoregressive integrated moving average model is established. This study demonstrates that the proposed method effectively identifies features that are most sensitive to degradation trends, accurately determines the initial fault moment of bearings, and achieves effective prediction of the remaining useful life of bearings.

Wheat grain classification using hyperspectral imaging: Concatenating Vis-NIR and SWIR Data for single and bulk grains

Wheat variety identification is an essential component of the official inspection of wheat grains to determine their quality and trade value. Traditionally, wheat class identification requires deep knowledge about the appearance of plants and kernels, their history and distribution. Therefore, there is an urgent need for an automatic technology to standardize the nomenclature of wheat varieties to enable both growers and producers to identify their grains practically. The present study investigated the feasibility of Visible-Near Infrared (Vis-NIR) and Short-Wave Infrared (SWIR) spectral imaging to identify wheat classes. Both sides of the wheat kernel as single kernel measurements and bulk grains were used to acquire hyperspectral data and vertical and horizontal data concatenation was implemented to explore performance differences. In addition, the classification of bulk kernels from single kernel data was investigated. Spectral data was pre-treated by standard normal variate (SNV), Savitzky-Golay first (SG-1) and second derivatives (SG-2) and linear discriminant analysis (LDA), support vector machine (SVM) and artificial neural network (ANN) were applied as the classification algorithms. Furthermore, feature selection was utilised using the minimum redundancy maximum relevance (mRMR) algorithm to investigate the performance difference between data concatenation and feature selection. The results showed that ventral (up) side data showed better classification performances than reverse (down) side data, while Vis-NIR data achieved higher classification accuracies than SWIR data. However, the best classification performance for single kernels was obtained by LDA-SNV using up and down data in the Vis-NIR and SWIR regions vertically and horizontally concatenated with an accuracy of 93.72% for 10-fold cross-validation and 94.93% for test sets. Models based on a hundred features did not achieve the accuracy of models based on concatenated data. Moreover, classification performances of bulk samples were higher than single kernels, which achieved 100% accuracy for both cross-validation and test sets. The study demonstrates that spectral imaging has a high potential to identify wheat classes non-destructively.

Semi-supervised feature selection with minimal redundancy based on group optimization strategy for multi-label data

Semi-supervised feature selection with minimal redundancy based on group optimization strategy for multi-label data

A Feature-Weighted Support Vector Regression Machine Based on Hilbert–Schmidt Independence Criterion Least Absolute Shrinkage and Selection Operator

Support vector regression (SVR) is a powerful kernel-based regression prediction algorithm that performs excellently in various application scenarios. However, for real-world data, the general SVR often fails to achieve good predictive performance due to its inability to assess feature contribution accurately. Feature weighting is a suitable solution to address this issue, applying correlation measurement methods to obtain reasonable weights for features based on their contributions to the output. In this paper, based on the idea of a Hilbert–Schmidt independence criterion least absolute shrinkage and selection operator (HSIC LASSO) for selecting features with minimal redundancy and maximum relevance, we propose a novel feature-weighted SVR that considers the importance of features to the output and the redundancy between features. In this approach, the HSIC is utilized to effectively measure the correlation between features as well as that between features and the output. The feature weights are obtained by solving a LASSO regression problem. Compared to other feature weighting methods, our method takes much more comprehensive consideration of weight calculation, and the obtained weighted kernel function can lead to more precise predictions for unknown data. Comprehensive experiments on real datasets from the University of California Irvine (UCI) machine learning repository demonstrate the effectiveness of the proposed method.

Predictive Value of Multi-Phase CT Radiomics in Delineating Early and Advanced T Staging of Colon Cancer

This study leveraged the power of multi-phase CT radiomics, which extracts detailed features from multi-phase images, to explore the distinction between early (T1-T2) and advanced (T3-T4) colon cancer stages in each of multiple phases, providing valuable insights to healthcare professionals and enhancing their decision-making capabilities. A total of 191 patients with surgically confirmed primary colon cancer were retrospectively included, and multi-phase CT scans (non-enhanced contrast phase, arterial phase, portal venous phase, and delayed phase) were conducted within one week before surgery. Three-dimensional segmentation of colonic tumors was performed on the images of the four phases, and radiomics features of each colonic tumor were automatically extracted. Minimum redundancy maximum relevance (mRMR) was applied to features selection in each of the four phases. The least absolute shrinkage and selection operator logistic regression was conducted to determine the association between radiomics features and early (T1-T2) and advanced (T3-T4) stages of colon cancer. Additionally, diagnostic performance comparison was carried out in four phases. The mean (±SD) age of the 191 individuals was 61.87±13.137 years, with females comprising 43.5% of the cohort. The selected features for the non-enhanced, arterial, portal venous, and delayed phases numbered 7, 11, 6, and 10, respectively. In the test set, the AUC values for the on-enhanced, arterial, portal venous, and delayed phases were 0.86 (0.76-0.96), 0.84 (0.73-0.94), 0.82 (0.71-0.93), and 0.86 (0.75-0.97), with corresponding accuracies of 0.84, 0.80, 0.75, and 0.88, sensitivities of 0.73, 0.64, 0.86, and 0.68, and specificities of 0.91, 0.91, 0.68, and 1.00, respectively. DeLong's test revealed no statistically significant differences in the AUC values between the four phases within the test sets (P = 0.3233~ 0.9912). Multi-phase CT radiomics demonstrated substantial value in differentiating between early (T1-T2) and advanced (T3-T4) stages of patients with colon cancer.

Enhancing the accuracy of blockage detection in centrifugal pump using the majority voting classifier on an unbalanced dataset

Blockage in a centrifugal pump can adversely impact its performance. In this study, an experimental facility is developed to simulate three types of blockages (suction, discharge, and simultaneous suction and discharge). To classify these faults and detect their severity, a methodology involving the application of majority voting classifier (MVC) to the pump’s discharge pressure signals is presented. An unbalanced dataset is constructed, where the number of samples for a specific blockage condition decreases with increasing fault severity. Statistical features, entropy features, and entropies meta features are extracted from the signal and ranked using XGBoost and minimum redundancy maximum relevance (MRMR). Subsequently, the optimal features are selected based on the best performing model (Linear Discriminant Analysis) among ten different models. Best four models are selected and ensembled to form MVC. Results show that MVC achieves an accuracy of 89.90% and 88.26% for features selected by XGBoost and MRMR, respectively. Finally, the unbalanced dataset is balanced using synthetic minority oversampling and it is shown that MVC achieves an accuracy of 100% on this balanced dataset for the features selected using both approaches.

Predictive Model for O3 in Shanghai Based on the KZ Filtering Technique and LSTM

In this study, a Kolmogorov-Zurbenko （KZ） filter was proposed to decompose the original ozone （O3） sequence to improve the accuracy of ozone long-term series prediction and select relevant meteorological features. Furthermore, the enhanced maximal minimal redundancy （mRMR） feature selection technique was combined with the support vector regression （SVR） approach to select the most illuminating meteorological features. Subsequently, from May to August 2023, during high ozone concentration periods, a long short-term memory network （LSTM） was utilized to assess and predict high ozone concentration periods at the monitoring stations of Jingan （urban area）, Pudong-Chuansha （suburban area）, and Dianshan Lake （suburban area） in Shanghai. The results showed that pressure, temperature, humidity, boundary layer height, and wind direction were the best combinations of O3 baseline and short-term components, as chosen by feature screening. The R2 values for Jingan Station, Pudong-Chuansha Station, and Dianshan Lake Station were 0.86, 0.83, and 0.85, respectively. The RMSE values were 18.26, 18.74, and 20.02 μg·m-3, respectively. These findings suggest that decomposing the original O3 sequence improved the prediction accuracy of ozone concentrations. Additionally, as indicated by the R2 and RMSE values found for every monitoring station, feature screening preserved the model's predictive performance.

Improving Alzheimer's Disease Prediction with Different Machine Learning Approaches and Feature Selection Techniques.

Machine learning (ML) has increasingly been utilized in healthcare to facilitate disease diagnosis and prediction. This study focuses on predicting Alzheimer's disease (AD) through the development and comparison of ML models using Support Vector Machine (SVM), Random Forest (RF), and Logistic Regression (LR) algorithms. Additionally, feature selection techniques including Minimum Redundancy Maximum Relevance (mRMR) and Mutual Information (MI) were employed to enhance the model performance. The research methodology involved training and testing these models on the OASIS-2 dataset, evaluating their predictive accuracies. Notably, LR combined with mRMR achieved the highest accuracy of 99.08% in predicting AD. These findings underscore the efficacy of ML algorithms in AD prediction and highlight the utility of the feature selection methods in improving the model performance. This study contributes to the ongoing efforts to leverage ML for more accurate disease prognosis and underscores the potential of these techniques in advancing clinical decision-making.

A comparative performance assessment of artificial intelligence based classifiers and optimized feature reduction technique for breast cancer diagnosis

Breast cancer (BC) is a catastrophic global health concern that causes numerous fatalities worldwide. Early detection of breast cancer may mitigate death rates; however, the prevailing diagnostic procedure for the malignancy necessitates numerous multifaceted laboratory tests that must be performed by medical professionals. In this article machine learning, a branch of Artificial Intelligence (AI), has been employed to improve cancer diagnosis, prognoses and survival rates while reducing the vulnerability of humans. Support Vector Machine (SVM), K-nearest Neighbors (KNN), Decision Tree (DT), Random Forest (RF) and Grey Wolf Optimizer (GWO) are implemented to prognosticate breast cancer. Comprehensive insights into the efficacy of these approaches for breast cancer prognosis are provided by the performance assessment that is accomplished using the confusion matrix, Receiver Operating Characteristic (ROC) curves and parallel coordinate plots. Both UCI (University of California Irvine) and SEER (Surveillance, Epidemiology and End Results) datasets have been utilized to confirm the investigation's findings and ensure their generalizability across diverse data sources. The results conclusively demonstrate that SVM is the cohort's most accurate classifier. With a stupendous accuracy rate of 99.1 %, the GWO-SVM compares favorably to all other algorithms. Furthermore, feature reduction approaches such as Minimum Redundancy Maximum Relevance (mRMR), ReliefF and Principal Component Analysis (PCA) are utilized. ReliefF has demonstrated exceptional effectiveness with a maximum accuracy of 98.2 %.

Motif Graph Neural Network.

Graphs can model complicated interactions between entities, which naturally emerge in many important applications. These applications can often be cast into standard graph learning tasks, in which a crucial step is to learn low-dimensional graph representations. Graph neural networks (GNNs) are currently the most popular model in graph embedding approaches. However, standard GNNs in the neighborhood aggregation paradigm suffer from limited discriminative power in distinguishing high-order graph structures as opposed to low-order structures. To capture high-order structures, researchers have resorted to motifs and developed motif-based GNNs. However, the existing motif-based GNNs still often suffer from less discriminative power on high-order structures. To overcome the above limitations, we propose motif GNN (MGNN), a novel framework to better capture high-order structures, hinging on our proposed motif redundancy minimization operator and injective motif combination. First, MGNN produces a set of node representations with respect to each motif. The next phase is our proposed redundancy minimization among motifs which compares the motifs with each other and distills the features unique to each motif. Finally, MGNN performs the updating of node representations by combining multiple representations from different motifs. In particular, to enhance the discriminative power, MGNN uses an injective function to combine the representations with respect to different motifs. We further show that our proposed architecture increases the expressive power of GNNs with a theoretical analysis. We demonstrate that MGNN outperforms state-of-the-art methods on seven public benchmarks on both the node classification and graph classification tasks.

An Efficient and Robust 3D Medical Image Classification Approach Based on 3D CNN, Time‐Distributed 2D CNN‐BLSTM Models, and mRMR Feature Selection

ABSTRACTThe advent of 3D medical imaging has been a turning point in the diagnosis of various diseases, as voxel information from adjacent slices helps radiologists better understand complex anatomical relationships. However, the interpretation of medical images by radiologists with different levels of expertise can vary and is also time‐consuming. In the last decades, artificial intelligence‐based computer‐aided systems have provided fast and more reliable diagnostic insights with great potential for various clinical purposes. This paper proposes a significant deep learning based 3D medical image diagnosis method. The method classifies MedMNIST3D, which consists of six 3D biomedical datasets obtained from CT, MRA, and electron microscopy modalities. The proposed method concatenates 3D image features extracted from three independent networks, a 3D CNN, and two time‐distributed ResNet BLSTM structures. The ultimate discriminative features are selected via the minimum redundancy maximum relevance (mRMR) feature selection method. Those features are then classified by a neural network model. Experiments adhere to the rules of the official splits and evaluation metrics of the MedMNIST3D datasets. The results reveal that the proposed approach outperforms similar studies in terms of accuracy and AUC.

An integrated framework of deep learning and entropy theory for enhanced high-dimensional permeability field identification in heterogeneous aquifers

Accurately estimating high-dimensional permeability (k) fields through data assimilation is critical for minimizing uncertainties in groundwater flow and solute transport simulations. However, designing an effective monitoring network to obtain diverse system responses in heterogeneous aquifers for data assimilation presents significant challenges. To investigate the influence of different measurement types (hydraulic heads, solute concentrations, and permeability) and monitoring strategies on the accuracy of permeability characterization, this study integrates a deep learning-based surrogate modeling approach and the entropy-based maximum information minimum redundancy (MIMR) monitoring design criterion into a data assimilation framework. An ensemble MIMR-optimized method is developed to provide more comprehensive monitoring information and avoid missing key information due to the randomness of stochastic response datasets in entropy analysis. A numerical case of solute transport with log-Gaussian permeability fields is presented, with twelve scenarios designed by combining different measurement types and monitoring strategies. The results demonstrated that the proposed ensemble MIMR-optimized method significantly improved the k-field estimates compared to the conventional MIMR method. Additionally, high prediction accuracy in forward modeling is essential for ensuring reliable inversion results, especially for observation data with strong nonlinearity. The findings of this study enhance our understanding and management of k-field estimation in heterogeneous aquifers, contributing to the development of more robust inversion frameworks for general data assimilation tasks.

Predicting the Response of Patients Treated with 177Lu-DOTATATE Using Single-photon Emission Computed Tomography–Computed Tomography Image-based Radiomics and Clinical Features

Abstract Background: In this study, we want to evaluate the response to Lutetium-177 (177Lu)-DOTATATE treatment in patients with neuroendocrine tumors (NETs) using single-photon emission computed tomography (SPECT) and computed tomography (CT), based on image-based radiomics and clinical features. Methods: The total volume of tumor areas was segmented into 61 SPECT and 41 SPECT-CT images from 22 patients with NETs. A total of 871 radiomics and clinical features were extracted from the SPECT and SPECT-CT images. Subsequently, a feature reduction method called maximum relevance minimum redundancy (mRMR) was used to select the best combination of features. These selected features were modeled using a decision tree (DT), random forest (RF), K-nearest neighbor (KNN), and support vector machine (SVM) classifiers to predict the treatment response in patients. For the SPECT and SPECT-CT images, ten and eight features, respectively, were selected using the mRMR algorithm. Results: The results revealed that the RF classifier with feature selection algorithms through mRMR had the highest classification accuracies of 64% and 83% for the SPECT and SPECT-CT images, respectively. The accuracy of the classifications of DT, KNN, and SVM for SPECT-CT images is 79%, 74%, and 67%, respectively. The poor accuracy obtained from different classifications in SPECT images (≈64%) showed that these images are not suitable for predicting treatment response. Conclusions: Modeling the selected features of SPECT-CT images based on their anatomy and the presence of extensive gray levels makes it possible to predict responses to the treatment of 177Lu-DOTATATE for patients with NETs.

AIPs-DeepEnC-GA: Predicting anti-inflammatory peptides using embedded evolutionary and sequential feature integration with genetic algorithm based deep ensemble model

Inflammation is a biological response to harmful stimuli including infections, damaged cells, tissue injuries, and toxic chemicals. It plays an essential role in facilitating tissue repair by eliminating pathogenic microorganisms. Currently, numerous therapies are applied to treat autoimmune and inflammatory diseases. However, these conventional anti-inflammatory medications are often labor-intensive, costly, and associated with adverse side effects. Recently, researchers have identified anti-inflammatory peptides (AIPs) as a cost-effective alternative for treating several inflammatory diseases, due to their high selectivity for target cells with minimal side effects. In this study, we introduce a novel computational predictor, AIPs-DeepEnC-GA, developed to accurately predict AIP samples. The training sequences are encoded using a novel n-spaced dipeptide-based position-specific scoring matrix (NsDP-PSSM) and Pseudo position-specific scoring matrix (PsePSSM)-based embedded evolutionary features. Additionally, the reduced-amino acid alphabet (RAAA-11), and composite Physiochemical properties (CPP) are employed to capture cluster-physiochemical properties based on structural information. A hybrid feature strategy is then applied, integrating embedded evolutionary features, CPP and RAAA-11 descriptors to overcome the limitations of individual encoding methods. Minimum redundancy and maximum relevance (mRMR) is utilized to select the optimal features. The selected features are trained using four different deep-learning models. The predictive labels generated by these models are provided to a genetic algorithm to form a deep-ensemble training model. The proposed AIPs-DeepEnC-GA model achieved a ∼15 % increase in predictive accuracy, reaching 94.39 %, and a 19 % improvement in the area under the curve (AUC), achieving a value of 0.98 using training sequences. For independent datasets, our method obtained improved accuracies of 91.87 %, and 89.21 %, with AUC values of 0.94 and 0.92 for Ind-I, and Ind-II, respectively. Our proposed AIPs-DeepEnC-GA model demonstrates an 11 % improvement in predictive accuracy over existing AIPs computational models using training samples. The efficacy and reliability of this model make it a promising tool for both in drug development and research academia.