Minimum Energy Conical Intersections Research Articles

Nuclear Quantum Effects on Nonadiabatic Dynamics of a Green Fluorescent Protein Chromophore Analogue: Ring-Polymer Surface-Hopping Simulation.

Herein, we have used the "on-the-fly" ring-polymer surface-hopping simulation method with the centroid approximation (RPSH-CA), in combination with the multireference OM2/MRCI electronic structure calculations to study the photoinduced dynamics of a green fluorescent protein (GFP) chromophore analogue in the gas phase, i.e., o-HBI, at 50, 100, and 300 K with 1, 5, 10, and 15 beads (3600 1 ps trajectories). The electronic structure calculations identified five new minimum-energy conical intersection (MECI) structures, which, together with the previous one, play crucial roles in the excited-state decay dynamics of o-HBI. It is also found that the excited-state intramolecular proton transfer (ESIPT) occurs in an ultrafast manner and is completed within 20 fs in all the simulation conditions because there is no barrier associated with this ESIPT process in the S1 state. However, the other excited-state dynamical results are strongly related to the number of beads. At 50 and 100 K, the nuclear quantum effects (NQEs) are very important; therefore, the excited-state dynamical results change significantly with the bead number. For example, the S1 decay time deduced from time-dependent state populations becomes longer as the bead number increases. Nevertheless, an essentially convergent trend is observed when the bead number is close to 10. In contrast, at 300 K, the NQEs become weaker and the above dynamical results converge very quickly even with 1 bead. Most importantly, the NQEs seriously affect the excited-state decay mechanism of o-HBI. At 50 and 100 K, most trajectories decay to the S0 state via perpendicular keto MECIs, whereas, at 300 K, only twisted keto MECIs are responsible for the excited-state decay. The present work not only comprehensively explores the temperature-dependent photoinduced dynamics of o-HBI, but also demonstrates the importance and necessity of NQEs in nonadiabatic dynamics simulations, especially at relatively low temperatures.

A CASSCF/MRCI trajectory surface hopping simulation of the photochemical dynamics and the gas phase ultrafast electron diffraction patterns of cyclobutanone.

We present the simulation of the photochemical dynamics of cyclobutanone induced by the excitation of the 3s Rydberg state. For this purpose, we apply the complete active space self-consistent field method together with the spin-orbit multireference configuration interaction singles treatment, combined with the trajectory surface hopping for the inclusion of nonadiabatic effects. The simulations were performed in the spin-adiabatic representation, including nine electronic states derived from three singlet and two triplet spin-diabatic states. Our simulations reproduce the two previously observed primary dissociation channels: the C2 pathway yielding C2H4 + CH2CO and the C3 pathway producing c-C3H6 + CO. In addition, two secondary products, CH2 + CO from the C2 pathway and C3H6 from the C3 pathway, both of them previously reported, are also observed in our simulation. We determine the ratio of the C3:C2 products to be about 2.8. Our findings show that most of the trajectories reach their electronic ground state within 200fs, with dissociation events finished after 300fs. We also identify the minimum energy conical intersections that are responsible for the relaxation and provide an analysis of the photochemical reaction mechanism based on multidimensional scaling. Furthermore, we demonstrate a minimal impact of triplet states on the photodissociation mechanism within the observed timescale. In order to provide a direct link to experiments, we simulate the gas phase ultrafast electron diffraction patterns and connect their features to the underlying structural dynamics.

Minimum-Energy Conical Intersections by Compressed Multistate Pair-Density Functional Theory.

Compressed multistate pair-density functional theory (CMS-PDFT) is a multistate version of multiconfiguration pair-density functional theory that can capture the correct topology of coupled potential energy surfaces (PESs) around conical intersections. In this work, we develop interstate coupling vectors (ISCs) for CMS-PDFT in the OpenMolcas and PySCF/mrh electronic structure packages. Yet, the main focus of this work is using ISCs to calculate minimum-energy conical intersections (MECIs) by CMS-PDFT. This is performed using the projected constrained optimization method in OpenMolcas, which uses ISCs to restrain the iterations to the conical intersection seam. We optimize the S1/S0 MECIs for ethylene, butadiene, and benzene and show that CMS-PDFT gives smooth PESs in the vicinities of the MECIs. Furthermore, the CMS-PDFT MECIs are in good agreement with the MECI calculated by the more expensive XMS-CASPT2 method.

Mechanistic insights into the AIE properties of BF2 complexes of N-acetyl 2-aminobenzothiazoles as rotorless polyheteroaromatics

A series of four novel BF2 complexes of N-acetyl 2-aminobenzothiazoles featuring rigid rotorless polyheteroaromatic structures have been designed and synthesized. All of these compounds exhibited AIE properties with excellent solid-state fluorescence quantum yields up to 81.7%. Theoretical calculations revealed the characteristics of their ground-state structures and excitation processes. Their seemingly abnormal nonradiative decay in solutions was investigated from both direct vibrational relaxation and S0/S1 surface crossing perspectives by the two-channel model. The minimum energy conical intersection (MECI) located by SF-TDDFT method indicated that the CI is mainly induced by the deformation of the BF2 complex ring, leads to elevated energy level, and thus is not responsible for the fluorescence quenching. The potential energy curve (PEC) constructed along the distortion angle θ of BF2 complex ring showed that when θ reaches 50° (the dark-state region approaching MECI), the energy barrier is only 0.11 eV, suggesting that the deformed dark state could serve as an effective deactivation channel via ultrafast internal conversion (IC). Crystallographic analysis illustrated that the F atoms perpendicular to the polyheterocycle could effectively prohibit detrimental π-π stacking and enhance intermolecular interactions, thereby resulting in efficient solid-state emission.

Excited-state dynamics of 4-hydroxyisoindoline-1,3-dione and its derivative as fluorescent probes.

Fluorescent probes have become promising tools for monitoring the concentration of peroxynitrite, which is linked to many diseases. However, despite focusing on developing numerous peroxynitrite based fluorescent probes, limited emphasis is placed on their sensing mechanism. Here, we investigated the sensing mechanism of a peroxynitrite fluorescent probe, named BHID-Bpin, with a focus on the relevant excited state dynamics. The photoexcited BHID-Bpin relaxes to its ground state via an efficient nonradiative process (∼300 ps) due to the presence of a minimum energy conical intersection between its first excited state and ground state. However, upon reacting with peroxynitrite, the Bpin moiety is cleaved from BHID-Bpin and BHID is formed. The formed BHID exhibits strong dual band fluorescence which is caused by an ultrafast excited-state intramolecular proton transfer process (∼1 ps).

Auger-Meitner and X-ray Absorption Spectra of Ethylene Cation: Insight into Conical Intersection Dynamics.

We present a theoretical investigation of the near-edge X-ray absorption fine structure and the Auger-Meitner decay spectra of ethylene and its cation. Herein, we demonstrate that our method, coupled with the nuclear ensemble approach, successfully reproduces the natural bandwidth structure of the experimental resonant Auger-Meitner decay spectra of ethylene, which is not very well reproduced within the Franck-Condon approximation. Furthermore, we analyze the Auger-Meitner decay spectra of the ethylene cation in light of minimum energy conical intersection structures involving the two lowest cationic states (D1 and D0), providing valuable insights into the ultrafast D1/D0 relaxation dynamics. Our results suggest that Auger-Meitner electron spectroscopy can help elucidate the mechanism behind the initial 20 fs of the relaxation dynamics.

A different view on the deactivation process of 3-hydroxy-salicylidene-methylamine system

Schiff bases stand out as a highly significant class of photochromic materials with widespread applications. The exploration of their photochromic mechanisms has garnered substantial interest over the past decades. In this work, we investigated the photochromic mechanism of 3-hydroxy-salicylidene methylamine (3-OH-SMA) by high-level electronic structure calculations and on-the-fly excited state dynamics simulations. Our investigation revealed the identification of three minimum energy conical intersections between S1 and S0 states, while only the one characterized by the central C = N bond twisting motion was involved in the deactivation process. This finding contrasts with previous reports, suggesting that the excited state intramolecular proton transfer (ESIPT) process was the main reaction channel in 3-OH-SMA. The proposed new decay mechanism provides valuable theoretical insights, paving the way for the further enhancement or rational design of photochromic materials.

A-Band Absorption Spectrum of the ClSO Radical: Electronic Structure of the Sulfinyl Group.

Sulfur oxide species (RSOx) play a critical role in many fields, ranging from biology to atmospheric chemistry. Chlorine-containing sulfur oxides may play a key role in sulfate aerosol formation in Venus' cloud layer by catalyzing the oxidation of SO to SO2 via sulfinyl radicals (RSO). We present results from the gas-phase UV-vis transient absorption spectroscopy study of the simplest sulfinyl radical, ClSO, generated from the pulsed-laser photolysis of thionyl chloride at 248 nm (at 40 Torr of N2 and 292 K). A weak absorption spectrum from 350 to 480 nm with a peak at 385 nm was observed, with partially resolved vibronic bands (spacing = 226 cm-1), and a peak cross section σ(385 nm) = (7.6 ± 1.9) × 10-20 cm2. From ab initio calculations at the EOMEE-CCSD/ano-pVQZ level, we assigned this band to 12A' ← X2A″ and 22A' ← X2A″ transitions. The spectrum was modeled as a sum of a bound-to-free transition to the 12A' state and a bound-to-bound transition to the 22A' state with similar oscillator strengths; the prediction agreed well with the observed spectrum. We attributed the vibronic structure to a progression in the bending vibration of the 22A' state. Further calculations at the XDW-CASPT2 level predicted a conical intersection between the excited 12A' and 22A' potential energy surfaces near the Franck-Condon region. The geometry of the minimum-energy conical intersection was similar to that of the ground-state geometry. The lack of structure at shorter wavelengths could be evidence of a short excited-state lifetime arising from strong vibronic coupling. From simplified molecular orbital analysis, we attributed the ClSO spectrum to transitions involving the out-of-plane π/π* orbitals along the S-O bond and the in-plane orbital possessing a σ/σ* character along the S-Cl bond. We hypothesize that these orbitals are common to other sulfinyl radicals, RSO, which would share a combination of a strong and a weak transition in the UV (near 300 nm) and visible (400-600 nm) regions.

CASPT2//CASSCF studies on mechanistic photophysics of 3-hydroxyflavone

3-Hydroxyflavone (3-HF) as the backbone of flavonols has been extensively studied on the dual fluorescence and excited-state intramolecular proton transfer (ESIPT) after photoexcitation. However, its detailed excited-state relaxation mechanism is still unclear. Herein, the minimum-energy structures, conical intersections and singlet–triplet crossing points of 3-HF in the 1ππ∗, 1nπ∗, 3ππ∗, 3nπ∗, and S0 states in the gas phase were first optimized by the CASPT2//CASSCF method. Then, the minimum-energy proton transfer (MEPT) and excited-state decay (ESD) pathways were calculated as well. Based on the calculation results, we proposed several possible ESD pathways from the initially populated bright S2(ππ*) state. The major channel is singlet-involved and stretch-torsion coupled ESIPT pathway. 3-HF in normal (N) form first undergoes efficient 1ππ* ESIPT with a small barrier of 2.2 kcal/mol to yield the 1ππ* proton-transferred tautomer (T). Subsequently, the T tautomer approaches the nearby accessible S1/S0 conical intersection and then occurs internal conversion (IC) to fall back to the S0 state. Finally, the S0 species quickly transfers into the N conformer via the reverse ground state intramolecular proton transfer (GSIPT) to realize the ground-state recovery. In addition, the minor ESD pathways are involved less efficient intersystem crossing (ISC) processes. The present work could provide insights into understanding the photophysics of flavonols and their derivatives.

Turn on the luminescence channel by the suppression of conical intersection process for the sulfur-containing hydrogen-bonded molecules

The sulfur-containing hydrogen bonds exhibit notable potential in gene and protein engineering. As an important research direction of sulfur-containing hydrogen bonding dynamics, the excited-state intramolecular proton transfer (ESIPT) reaction of the thiol proton has garnered significant interest. Recently, Chou et al. synthesized a series of sulfur-containing H-bonded molecules, inclusive of 3-thiolflavone (3 TF), its trifluoromethyl derivative (3FTF), and its diethylamino derivative (3NTF), thereby inaugurating a new chapter in the ESIPT reaction of the thiol proton. Nevertheless, many open issues cannot be answered solely by experimental means and call for a detailed theoretical investigation, especially the relationship between the molecular excited-state properties and different luminescence properties of the three molecules. Herein, we validate that the molecules undergo the ESIPT reaction of the thiol proton and identify the time scale through the time-dependent density functional theory (TDDFT) calculation. Moreover, employing the spin-flip TDDFT approach, the analysis of the non-radiative transition process reveals that difference in Gibbs free energy of activation (ΔG⧧) for the transition from Frank-Condon point to minimum energy conical intersection (MECI) point primarily accounts for the different luminescence properties of the three molecules. Besides, we also reveal the reason for the abnormal blue-shifted fluorescence of the 3NTF in the aggregated state by the ONIOM (TDDFT: UFF) strategy. These findings are favorable to understanding the luminescence mechanism of sulfur-containing H-bonded molecules and provide a reference for the synthesis and design of the luminescent materials based on the molecules with thiol proton transfer properties.

Theoretical Investigation of the E/Z Photoisomerization Pathway in 1-(2-Pyrrolyl)-2-(2-thienyl)ethylene.

Molecular-level understanding of photochemistry in simple vinylene-linked systems such as ethylene and stilbene has been a major area of research. However, the effect of replacing the two benzene rings by five-membered heterocyclic rings, thiophene and pyrrole, is yet to be reported. In the present theoretical study, our aim is to illustrate photoinduced processes in a vinylene-linked thiophene-pyrrole system. Computational studies are carried out at the RI-MP2/RI-ADC(2)/cc-pVTZ level to explore different isomerization pathways. Minimum-energy conical intersection (MECI) structures are categorized into two types: closed-ring and twisted-pyramidalized structures. Relaxation through the former MECIs is accessible only from the cis isomers. However, the latter MECIs are inaccessible due to high energy barriers along the linear interpolation in internal coordinate paths.

Unveiling controlling factors of the S0/S1 minimum-energy conical intersection (3): Frozen orbital analysis based on the spin-flip theory.

Conical intersections (CIs), which indicate the crossing of two or more adiabatic electronic states, are crucial in the mechanisms of photophysical, photochemical, and photobiological processes. Although various geometries and energy levels have been reported using quantum chemical calculations, the systematic interpretation of the minimum energy CI (MECI) geometries is unclear. A previous study [Nakai et al., J. Phys. Chem. A 122, 8905 (2018)] performed frozen orbital analysis (FZOA) based on time-dependent density functional theory (TDDFT) at the MECI formed between the ground and first electronic excited states (S0/S1 MECI), thereby inductively clarifying two controlling factors. However, one of the factors that the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energy gap became close to the HOMO-LUMO Coulomb integral was not valid in the case of spin-flip TDDFT (SF-TDDFT), which is frequently used as a means of the geometry optimization of MECI [Inamori et al., J. Chem. Phys. 152, 144108 (2020)]. This study revisited the controlling factors using FZOA for the SF-TDDFT method. Based on spin-adopted configurations within a minimum active space, the S0-S1 excitation energy is approximately represented by the HOMO and LUMO energy gap ΔεHL, a contribution from Coulomb integrals JHL″ and that from the HOMO-LUMO exchange integral KHL″. Furthermore, numerical applications of the revised formula at the SF-TDDFT method confirmed the control factors of S0/S1 MECI.

Finding Excited-State Minimum Energy Crossing Points on a Budget: Non-Self-Consistent Tight-Binding Methods.

The automated exploration and identification of minimum energy conical intersections (MECIs) is a valuable computational strategy for the study of photochemical processes. Due to the immense computational effort involved in calculating non-adiabatic derivative coupling vectors, simplifications have been introduced focusing instead on minimum energy crossing points (MECPs), where promising attempts were made with semiempirical quantum mechanical methods. A simplified treatment for describing crossing points between almost arbitrary diabatic states based on a non-self-consistent extended tight-binding method, GFN0-xTB, is presented. Involving only a single diagonalization of the Hamiltonian, the method can provide energies and gradients for multiple electronic states, which can be used in a derivative coupling-vector-free scheme to calculate MECPs. By comparison with high-lying MECIs of benchmark systems, it is demonstrated that the identified geometries are good starting points for further MECI refinement with ab initio methods.

Analytic first-order derivatives of CASPT2 with IPEA shift.

Complete active space second-order perturbation theory (CASPT2) is useful for accurately predicting properties of complex electronic structures, but it is well known that it systematically underestimates excitation energies. The underestimation can be corrected using the ionization potential-electron affinity (IPEA) shift. In this study, analytic first-order derivatives of CASPT2 with the IPEA shift are developed. CASPT2-IPEA is not invariant with respect to rotations among active molecular orbitals, and two additional constraint conditions are necessary in the CASPT2 Lagrangian to formulate analytic derivatives. The method developed here is applied to methylpyrimidine derivatives and cytosine, and minimum energy structures and conical intersections are located. By comparing energies relative to the closed-shell ground state, we find that the agreement with experiments and high-level calculations is indeed improved by the inclusion of the IPEA shift. The agreement of geometrical parameters with high-level calculations may also be improved in some cases.

Communication: Non-adiabatic derivative coupling elements for the coupled cluster singles and doubles model.

We present an efficient implementation of analytical non-adiabatic derivative coupling elements for the coupled cluster singles and doubles model. The derivative coupling elements are evaluated in a biorthonormal formulation in which the nuclear derivative acts on the right electronic state, where this state is biorthonormal with respect to the set of left states. This stands in contrast to earlier implementations based on normalized states and a gradient formula for the derivative coupling. As an illustration of the implementation, we determine a minimum energy conical intersection between the nπ* and ππ* states in the nucleobase thymine.

Calculation of Excited State Internal Conversion Rate Constant Using the One-Effective Mode Marcus-Jortner-Levich Theory.

In this article, the one-effective mode Marcus-Jortner-Levich (MJL) theory and the classical Marcus theory for electron transfer were applied to estimate the internal conversion rate constant, kIC, of organic molecules and a Ru-based complex, all belonging to the Marcus inverted region. For this, the reorganization energy was calculated using the minimum energy conical intersection point to account for more vibrational levels, correcting the density of states. The results showed good agreement with experimental and theoretically determined kIC, with a small overestimation by the Marcus theory. Also, molecules less dependent on the solvent effects, like benzophenone, presented better results than molecules with an expressive dependence, like 1-aminonaphthalene. Moreover, the results suggest that each molecule possesses unique normal modes leading to the excited state deactivation that does not necessarily match the X-H bond stretching, as previously suggested.

Dense and Acidic Organelle-Targeted Visualization in Living Cells: Application of Viscosity-Responsive Fluorescence Utilizing Restricted Access to Minimum Energy Conical Intersection

Cell-imaging methods with functional fluorescent probes are an indispensable technique to evaluate physical parameters in cellular microenvironments. In particular, molecular rotors, which take advantage of the twisted intramolecular charge transfer (TICT) process, have helped evaluate microviscosity. However, the involvement of charge-separated species in the fluorescence process potentially limits the quantitative evaluation of viscosity. Herein, we developed viscosity-responsive fluorescent probes for cell imaging that are not dependent on the TICT process. We synthesized AnP2-H and AnP2-OEG, both of which contain 9,10-di(piperazinyl)anthracene, based on 9,10-bis(N,N-dialkylamino)anthracene that adopts a nonflat geometry at minimum energy conical intersection. AnP2-H and AnP2-OEG exhibited enhanced fluorescence as the viscosity increased, with sensitivities comparable to those of conventional molecular rotors. In living cell systems, AnP2-OEG showed low cytotoxicity and, reflecting its viscosity-responsive property, allowed specific visualization of dense and acidic organelles such as lysosomes, secretory granules, and melanosomes under washout-free conditions. These results provide a new direction for developing functional fluorescent probes targeting dense organelles.

A Nitrogen Out-of-Plane (NOOP) Mechanism for Imine-Based Light-Driven Molecular Motors

Light-driven molecular motors have generated considerable interest due to their potential applications in material and biological systems. Recently, Greb and Lehn reported a new class of molecular motors, chiral N-alkyl imines, which undergo unidirectional rotation induced by light and heat. The mechanism of unidirectional motion in molecular motors containing a C═N group has been assumed to consist of photoinduced torsion about the double bond. In this work, we present a computational study of the photoisomerization dynamics of a chiral N-alkyl imine motor. We find that the location and energetics of minimal energy conical intersections (MECIs) alone are insufficient to understand the mechanism of the motor. Furthermore, a key part of the mechanism consists of out-of-plane distortions of the N atom (followed by isomerization about the double bond). Dynamic effects and out-of-plane distortions are critical to understand the observed (rather low) quantum yield for photoisomerization. Our results provide hints as to how the photoisomerization quantum yield might be increased, improving the efficiency of this class of molecular motors.

Modeling Light-Induced Chromophore Hydration in the Reversibly Photoswitchable Fluorescent Protein Dreiklang.

We report the results of a computational study of the mechanism of the light-induced chemical reaction of chromophore hydration in the fluorescent protein Dreiklang, responsible for its switching from the fluorescent ON-state to the dark OFF-state. We explore the relief of the charge-transfer excited-state potential energy surface in the ON-state to locate minimum energy conical intersection points with the ground-state energy surface. Simulations of the further evolution of model systems allow us to characterize the ground-state reaction intermediate tentatively suggested in the femtosecond studies of the light-induced dynamics in Dreiklang and finally to arrive at the reaction product. The obtained results clarify the details of the photoswitching mechanism in Dreiklang, which is governed by the chemical modification of its chromophore.

Substituent‐controlled aggregate luminescence: Computational unraveling of S1/S0 surface crossing

AbstractWe computationally investigated the molecular aggregation effects on the excited state deactivation processes by considering both the direct vibrational relaxation and the S0/S1 surface crossing, that is, the minimum energy conical intersection (MECI). Taking classical AIEgens bis(piperidyl)anthracenes (BPAs) isomers and the substituted silole derivatives as examples, we show that the deformation of MECI always occurs at the atom with greater hole/electron overlap. Besides, the energetic and structural changes of MECI caused by substituent has been investigated. We find that effective substituent such as the addition of the electron‐donating groups, which can polarize the distribution of hole/electron density of molecules, will lead to the pyramidalization deformation of MECI occurring at the substituent position and simultaneously reduce the required energy to reach MECI. And MECI is sterically restricted by the surrounding molecules in solid phase, which remarkably hinders the non‐radiative decay through surface crossing. Through quantitative computational assessments of the fluorescence quantum efficiency for both solution and solid phases, we elucidate the role of MECI and its dependence on the substitutions through pyramidalization deformation, which give rise to the aggregation‐induced emission (AIE) phenomenon for 9,10‐BPA, to aggregation‐enhance emission (AEE) behavior for 1,4‐BPA, and to conventional aggregation‐caused quenching (ACQ) for 1,5‐BPA. We further verify such mechanism for siloles, for which we found that the substitutions do not change the AIE behavior. Our findings render a general molecular design approach to manipulating the aggregation effect for optical emission.