New helium isotope data measured in Cenozoic intraplate basalts and their mantle xenoliths are compared with present-day mantle helium emission on a regional scale from thermal and nonthermal gas discharges on the South Island of New Zealand and the offshore Chatham Islands. Cenozoic intraplate basaltic volcanism in southern New Zealand has ocean island basalt affinities but is restricted to continental areas and absent from adjacent Pacific oceanic crust. Its distribution is diffuse and widespread, it is of intermittent timing and characterised by low magma volumes. Most of the 3He/ 4He ratios measured in fluid inclusions in mantle xenocrysts and basalt phenocrysts such as olivine, garnet, and amphibole fall within the narrow range of 8.5 ± 1.5 Ra (Ra is the atmospheric 3He/ 4He ratio) with a maximum value of 11.5 Ra. This range is characteristic of the relatively homogeneous and degassed upper MORB-mantle helium reservoir. No helium isotope ratios typical of the lower less degassed mantle (>12 Ra), such as exemplified by the modern hot-spot region of Hawaii (with up to 32 Ra) were measured. Helium isotope ratios of less than 8 Ra are interpreted in terms of dilution of upper mantle helium with a radiogenic component, due to either age of crystallisation or small-scale mantle heterogeneities caused by mixing of crustal material into the upper mantle. The crude correlation between age of samples and helium isotopes with generally lower R/Ra values in mantle xenoliths compared with host rock phenocrysts and the in general depleted Nd and Sr isotope ratios and the light rare earth element enrichment of the basalts supports derivation of melts as small melt fractions from a depleted upper mantle, with posteruptive ingrowth of radiogenic helium as a function of lithospheric age. In comparison, the regional helium isotope survey of thermal and nonthermal gas discharges of the South Island of New Zealand shows that mantle 3He anomalies in general do not show an obvious relationship with either age or proximity to the Cenozoic intraplate volcanic centres or with major faults. In general, areas characterised by mantle 3He emission are interpreted to define those regions beneath which mantle melting and basalt magma addition to the crust are recent. The strongest mantle 3He anomaly (equivalent to >80% mantle helium component) is centred over southern Dunedin, measured in magmatic CO 2-rich mineral water springs issuing from crystalline basement rocks which outcrop at the southern extent of Miocene intraplate basaltic volcanism which ceased 9 Ma ago. This mantle helium anomaly overlaps with an area characterised by elevated surface high heat flow, compatible with a long-lived mantle melt/heat input into the crust. In comparison Banks Peninsula, another Miocene intraplate basaltic centre, is characterised by relatively low surface heat flow and a small mantle helium contribution measured in a nitrogen-rich spring. Here the thermal transient induced by the magmatic event has either dissipated or has not reached the surface. In the former case one might be dealing with storage and mixing of magmatic and crustal gases at shallow crustal levels and in the latter with active to recent mantle-melt degassing at depth. Along the most actively deforming part of the plate boundary zone, the transpressional Alpine Fault and Marlborough fault systems, mantle helium is present in gas-rich springs in all those areas underlain by actively subducting oceanic crust (the Australian plate in the south and Pacific plate in the north), whereas the central part of the Alpine transpressional fault is characterised by pure crustal radiogenic helium. Areas where the mantle helium component is negligible are restricted to the centre part of the South Island, extending along its length from Southland to northern Canterbury and Murchison. These areas are interpreted to delineate the extent of thicker and colder lithosphere compared to all other areas where mantle helium release from partial mantle melts at depth is recent to active being added to the lower lithosphere and/or lower crust. Areas characterised by mantle helium anomalies are equated with areas of thermal mantle anomalies, i.e., localised mantle heterogeneities such as upwelling less dense silicate melts in the upper asthenospheric mantle.