This study aimed to perform comprehensive analyses of the performance of the industrial-scale production of three different beverages (whole milk, black coffee, and milk coffee) in carton aseptic and glass bottle packaging process lines from raw material to the secondary packed final product by using innovative exergo-economic approach to promote a detailed data for a sustainable, performance-efficient production and economy in beverage industry. System performance efficiencies (energy and exergy) for the whole of production lines and individual processing steps were determined, and the exergo-economic performance of the industrial productions of three different beverages was compared. The maximum overall exergy efficiencies for glass bottle and carton aseptic packaging lines were as 52.57 % and 55.90 %, respectively, in whole milk production whereas the minimum overall exergy efficiencies were for these lines were 47.39 % and 48.67 %, respectively, for milk coffee production. For whole milk, the process steps having the minimum exergy efficiency were the filling step in carton aseptic (23.14 %±1.25) and the seperation step (26.90 %±1.09) in glass bottle packaging lines. For black coffee and milk coffee productions, the process step with the highest improvement potential was the homogenization/deaeration step for both carton aseptic and glass bottle packaging lines. The highest exergy destruction costs were obtained for the milk coffee; 72.52±0.03$/MJ for carton aseptic package and 63.82±1.85$/MJ for glass bottle. The most cost-efficient process was determined to be the black coffee in the carton aseptic packaging line due to the minimum product cost rate (89.71±2.39 $/MJ). It is thought that this study contributes valuable information on the approach of the comparing the performance of different production lines using exergo-economic evaluation.