A variety of molecular methods can aid in the elucidation of complex chromosomal aberrations. We report the case of a newborn infant with ambiguous genitalia born to a 32 year-old G2 P1. Physical exam at delivery showed a vigorous infant with a small phallus with mid-shaft hypospadias. A bifid scrotum was present, with a palpable gonad bilaterally. Abdominal ultrasound showed no female internal structures. Blood was obtained for karyotype and sex determination, and CAM was ruled out. Initial PCR was positive for sry sequences; amelogenin studies done on the same sample showed only X sequences. The preliminary karyotype showed only 46, XX cells. The amelogenin studies were repeated with a longer exposure, and this time in addition to the normal X sequences, very faint amplification of the Y sequences was visible. Final prophase karyotype showed the majority of cells to be 46, XX, however 4 of 22 cells examined showed a 46, XY pattern. Fluorescent in situ hybridization studies, using both whole chromosome paint for the Y chromosome, and a mixture of alpha satellite and classical satellite probes confirmed the presence of XY cells in the culture. The karyotype was 46.XX[18]/46, XY[4].ish (wcpY + ,DYZ1 + ,DYZ3 + ). The infant is doing well at 3 months and is being raised as a male. Good communications and coordination between the cytogenetic and molecular labs in this potentially confusing case allowed for a rapid diagnosis.
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