Microsensor Measurements Research Articles

Microscale sampling of the coral gastrovascular cavity reveals a gut-like microbial community

Animal guts contain numerous microbes, which are critical for nutrient assimilation and pathogen defence. While corals and other Cnidaria lack a true differentiated gut, they possess semi-enclosed gastrovascular cavities (GVCs), where vital processes such as digestion, reproduction and symbiotic exchanges take place. The microbiome harboured in GVCs is therefore likely key to holobiont fitness, but remains severely understudied due to challenges of working in these small compartments. Here, we developed minimally invasive methodologies to sample the GVC of coral polyps and characterise the microbial communities harboured within. We used glass capillaries, low dead volume microneedles, or nylon microswabs to sample the gastrovascular microbiome of individual polyps from six species of corals, then applied low-input DNA extraction to characterise the microbial communities from these microliter volume samples. Microsensor measurements of GVCs revealed anoxic or hypoxic micro-niches, which persist even under prolonged illumination with saturating irradiance. These niches harboured microbial communities enriched in putatively microaerophilic or facultatively anaerobic taxa, such as Epsilonproteobacteria. Some core taxa found in the GVC of Lobophyllia hemprichii from the Great Barrier Reef were also detected in conspecific colonies held in aquaria, indicating that these associations are unlikely to be transient. Our findings suggest that the coral GVC is chemically and microbiologically similar to the gut of higher Metazoa. Given the importance of gut microbiomes in mediating animal health, harnessing the coral “gut microbiome” may foster novel active interventions aimed at increasing the resilience of coral reefs to the climate crisis.

Radiative energy budgets of migrational microphytobenthic biofilms

Epipelic, biofilm-forming diatoms are key drivers of the primary production of mudflats. Such primary production is strongly affected by the vertical migration of diatoms, which is modulated by diurnal photoperiods, tidal cycles, and photoprotection mechanisms. However, the role of vertical migration in the radiative energy budget (REB) of microphytobenthic biofilms remains largely unknown. Here we used microsensor measurements of temperature and O2 in combination with reflectance spectroscopy and variable chlorophyll fluorimetry to construct the REB of intertidal, epipelic diatom-dominated biofilms for different emersion times (1, 3 and 5 h after the beginning of the in-situ emersion) and photon irradiance regimes, i.e., 400 and 800 µmol photon m−2 s−1. The effect of migration on REBs was studied by inhibiting diatom motility with Latrunculin A (Lat-A). Photosynthetic activity and light utilization efficiency decreased slightly, after adding Lat-A, while the amount of reflected light energy remained constant at ~ 23% of the incident irradiance and the majority (76–78%) of the incident light energy was dissipated as heat. Of the energy dissipated as heat, < 24% was dissipated upward in Lat-A treated samples, while an increasing downward heat dissipation was observed in Lat-A treated samples, as compared to control samples under an irradiance of 800 µmol photon m−2 s−1. However, we found no statistical significant differences in the REB and physiological parameters in the different treatments. Thus, we did not find any evidence that vertical migration of diatoms affected photosynthesis and light efficiency in the microphytobenthic biofilm over an emersion cycle, and a clear effect of non-photochemical quenching in REB and heat dissipation fluxes was not observed.

Pig manure degradation and carbon emission: Measuring and modeling combined aerobic-anaerobic transformations.

Greenhouse gas emissions from liquid livestock manure storage significantly contribute to global warming. Accurate farm-scale models are essential for predicting these emissions and evaluating manure management strategies, but they rely on multiple parameters describing carbon loss dynamics. Surface respiration may significantly influence carbon loss and methane emission, yet it is not explicitly included in current models. We conducted experiments to measure pig manure surface respiration rate and its effect on organic matter degradation and methane and carbon dioxide emissions. Manure was incubated for 283 days at 10°C or 20°C under aerobic or anaerobic conditions, while measuring methane and carbon dioxide emission. This was followed by anaerobic digestion at 38°C. Surface respiration reduced the organic matter content, and the effect was temperature dependent. Methane emission was not affected by surface respiration, suggesting that substrate availability was not rate-limiting for methanogenesis. Surface respiration rates were 18.1±3.5g CO2 m-2 day-1 at 10°C and 37.1±13.1g CO2 m-2 day-1 at 20°C (mean±standard deviation) and were consistent with microsensor measurements of oxygen consumption in different manure surfaces. Based on these results, temperature- and surface area-dependent respiration was incorporated in the existing anaerobic biodegradation model (ABM). Simulations showed that surface respiration accounts for 29% of carbon losses in a typical pig house and 8% for outdoor storage. Developing and refining algorithms for diverse carbon transformations, such as surface respiration, is crucial for evaluating the potential for methane emission and identification of variables that control emissions at the farm scale.

Fate of carbon influenced by the in-situ growth of phototrophic biofilms at the soil–water interface of paddy soil

Phototrophic biofilms (PBs) are commonly found in the sediment/soil–water interface of paddy soils and have a significant impact on carbon cycles. However, the specific carbon fate influenced by the in-situ growth of PBs in paddy soil remains unclear. In this study, we investigated the effect of in situ PBs growth on methane and carbon dioxide emissions, as well as dissolved organic matter (DOM) transformation. Our findings demonstrated a negative correlation between PBs growth and methane and carbon dioxide emissions, while showing a positive correlation with DOM composition. The in-situ growth of PBs reduced methane emissions by approximately 79 % and carbon dioxide emissions by approximately 33 % in the daytime, and also slowed down the degradation rate of dissolved organic matter from over 30.4 % to <16 %. Microsensor measurements revealed that these changes were attributed to the increased concentration and penetration depth of oxygen, as well as variations in pH caused by the growth of in situ PBs. Co-occurrence analysis indicated a robust correlation between DOM transformation and the significantly suppressed methanogenesis by methanogens such as Methanosaeta, Methanomassiliicoccus and Methanosarcina, and also the notably enhanced methane oxidation by methanotrophs including Methylobacterium, Methyloversatilis and Methylomonas, in response to the growth of PBs. These findings shed light on the impact of in situ PBs on methane and carbon dioxide emissions and DOM transformation, providing new insights for understanding carbon cycling in paddy soils.

Alternating direction of catholyte forced flow-through 3D-electrodes improves start-up time in microbial electrosynthesis at applied high current density

Microbial electrosynthesis is an uprising concept for the combined carbon dioxide reduction and electricity storage in the form of green chemical compounds. Although several proof of principle studies show great promise, mass-transfer limitations of substrates, protons and products remains one of the issues that needs to be addressed to bring the systems towards greater scale applications. A previously tested solution formed force flow-through catholyte recirculation, but this set-up encountered difficulties with gas accumulation during start-up at higher current densities (∼ −10 kA/m3), creating the need for a bypass to release gas. In this study, start-up at high current density was achieved without a bypass by using an alternating flow-through regime. This regime decreased the operating energy input from 221 to 136 kWh per kg of produced hydrogen and reached acetate production within 10 days after start-up at high current density and elongation to n-caproate after 45 days. Mass-transfer studies were included by microsensor measurements of local conditions (hydrogen concentration, pH) combined with thermodynamic calculations at the start and end of 60-days biotic experiments. The microorganisms on the cathode decreased pH gradients and consumed the formed hydrogen. The presence of Clostridium sensu stricto 12 and Peptococcaceae species were related to chain elongation activity, and the presence of Methanobrevibacter was linked to methanogenesis activity. By identifying the effects of different flow-through strategies on local concentrations and functional microbial groups, this work provides insights on the optimal conditions for microbial CO2 conversion and highlight the application potential of microbial electrosynthesis.

Reactive Nitrogen Hotspots Related to Microscale Heterogeneity in Biological Soil Crusts.

Biocrusts covering drylands account for major fractions of terrestrial biological nitrogen fixation and release large amounts of gaseous reactive nitrogen (Nr) as nitrous acid (HONO) and nitric oxide (NO). Recent investigations suggested that aerobic and anaerobic microbial nitrogen transformations occur simultaneously upon desiccation of biocrusts, but the spatio-temporal distribution of seemingly contradictory processes remained unclear. Here, we explore small-scale gradients in chemical concentrations related to structural characteristics and organism distribution. X-ray microtomography and fluorescence microscopy revealed mixed pore size structures, where photoautotrophs and cyanobacterial polysaccharides clustered irregularly in the uppermost millimeter. Microsensor measurements showed strong gradients of pH, oxygen, and nitrite, nitrate, and ammonium ion concentrations at micrometer scales in both vertical and lateral directions. Initial oxygen saturation was mostly low (∼30%) at full water holding capacity, suggesting widely anoxic conditions, and increased rapidly upon desiccation. Nitrite concentrations (∼6 to 800 μM) and pH values (∼6.5 to 9.5) were highest around 70% WHC. During further desiccation they decreased, while emissions of HONO and NO increased, reaching maximum values around 20% WHC. Our results illustrate simultaneous, spatially separated aerobic and anaerobic nitrogen transformations, which are critical for Nr emissions, but might be impacted by future global change and land management.

Green fluorescent protein-like pigments optimise the internal light environment in symbiotic reef-building corals.

Pigments homologous to the green fluorescent protein (GFP) have been proposed to fine-tune the internal light microclimate of corals, facilitating photoacclimation of photosynthetic coral symbionts (Symbiodiniaceae) to life in different reef habitats and environmental conditions. However, direct measurements of the in vivo light conditions inside the coral tissue supporting this conclusion are lacking. Here, we quantified the intra-tissue spectral light environment of corals expressing GFP-like proteins from widely different light regimes. We focus on: (1) photoconvertible red fluorescent proteins (pcRFPs), thought to enhance photosynthesis in mesophotic habitats via wavelength conversion, and (2) chromoproteins (CPs), which provide photoprotection to the symbionts in shallow water via light absorption. Optical microsensor measurements indicated that both pigment groups strongly alter the coral intra-tissue light environment. Estimates derived from light spectra measured in pcRFP-containing corals showed that fluorescence emission can contribute to >50% of orange-red light available to the photosynthetic symbionts at mesophotic depths. We further show that upregulation of pink CPs in shallow-water corals during bleaching leads to a reduction of orange light by 10-20% compared to low-CP tissue. Thus, screening by CPs has an important role in mitigating the light-enhancing effect of coral tissue scattering and skeletal reflection during bleaching. Our results provide the first experimental quantification of the importance of GFP-like proteins in fine-tuning the light microclimate of corals during photoacclimation.

Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus.

The toolbox available for microbiologists to study interspecies interactions is rapidly growing, and with continuously more advanced instruments, we are able to expand our knowledge on establishment and function of microbial communities. However, unravelling molecular interspecies interactions in complex biological systems remains a challenge, and interactions are therefore often studied in simplified communities. Here we perform an in-depth characterization of an observed interspecies interaction between two co-isolated bacteria, Xanthomonas retroflexus and Paenibacillus amylolyticus. Using microsensor measurements for mapping the chemical environment, we show how X. retroflexus promoted an alkalization of its local environment through degradation of amino acids and release of ammonia. When the two species were grown in proximity, the modified local environment induced a morphological change and growth of P. amylolyticus followed by sporulation. 2D spatial metabolomics enabled visualization and mapping of the degradation of oligopeptide structures by X. retroflexus and morphological changes of P. amylolyticus through e.g. the release of membrane-associated metabolites. Proteome analysis and microscopy were used to validate the shift from vegetative growth towards sporulation. In summary, we demonstrate how environmental profiling by combined application of microsensor, microscopy, metabolomics and proteomics approaches can reveal growth and sporulation promoting effects resulting from interspecies interactions.

Carbonate chemistry in the microenvironment within cyanobacterial aggregates under present‐day and future pCO2 levels

AbstractPhotosynthesis and respiration cause distinct chemical microenvironments within cyanobacterial aggregates. Here, we used microsensors and a diffusion–reaction model to characterize gradients in carbonate chemistry and investigate how these are affected by ocean acidification in Baltic vs. Pacific aggregates (Nodularia and Dolichospermum vs. Trichodesmium). Microsensor measurements of O2 and pH were performed under in situ and expected future pCO2 levels on Nodularia and Dolichospermum aggregates collected in the Baltic Sea. Under in situ conditions, O2 and pH levels within the aggregates covered ranges of 80–175% air saturation and 7.7–9.4 in dark and light, respectively. Carbon uptake in the light was predicted to reduce HCO3− by 100–150 μmol L−1 and CO2 by 3–6 μmol L−1 in the aggregate center compared to outside, inducing strong CO2 depletion (down to 0.5 μmol L−1 CO2 remaining in the center) even when assuming that HCO3− covered 80–90% of carbon uptake. Under ocean acidification conditions, enhanced CO2 availability allowed for significantly lower activity of carbon concentrating mechanisms, including a reduction of the contribution of HCO3− to carbon uptake by up to a factor of 10. The magnification of proton gradients under elevated pCO2 that was predicted based on a lower buffer capacity was observed in measurements despite a concurrent decrease in photosynthetic activity. In summary, we provide a quantitative image of the inorganic carbon environment in cyanobacterial aggregates under present‐day and expected future conditions, considering both the individual and combined effects of the chemical and biological processes that shape these environments.

Possible link between Earth\u2019s rotation rate and oxygenation

The biotic and abiotic controls on major shifts in atmospheric oxygen and the persistence of low-oxygen periods over a majority of Earth’s history remain under debate. Explanations of Earth’s stepwise pattern of oxygenation have mostly neglected the effect of changing diel illumination dynamics linked to daylength, which has increased through geological time due to Earth’s rotational deceleration caused by tidal friction. Here we used microsensor measurements and dynamic modelling of interfacial solute fluxes in cyanobacterial mats to investigate the effect of changing daylength on Precambrian benthic ecosystems. Simulated increases in daylength across Earth’s historical range boosted the diel benthic oxygen export, even when the gross photosynthetic production remained constant. This fundamental relationship between net productivity and daylength emerges from the interaction of diffusive mass transfer and diel illumination dynamics, and is amplified by metabolic regulation and microbial behaviour. We found that the resultant daylength-driven surplus organic carbon burial could have shaped the increase in atmospheric oxygen that occurred during the Great and Neoproterozoic Oxidation Events. Our suggested mechanism, which links the coinciding increases in daylength and atmospheric oxygen via enhanced net productivity, reveals a possible contribution of planetary mechanics to the evolution of Earth’s biology and geochemistry.

Household slow sand filter efficiency with schmutzdecke evaluation by microsensors

ABSTRACT Slow sand filtration is a common technology providing potable water in rural households across Latin America, Asia and Africa. Two PVC household slow sand filters (HSSF) were operated in continuous (C-HSSF) and intermittent (I-HSSF) flow modes for eight consecutive months. A non-woven blanket was installed on the fine sand top to facilitate cleaning with scheduled maintenance undertaken every 30 days. The efficiency of each HSSF was evaluated via physico-chemical indicators (reduction of turbidity and colour) with biological performance assessed via total coliform and E. coli enumeration post treatment. There were no statistically significant differences between the continuous flow and intermittent flow models for physical–chemical and total coliform reduction parameters. However, when evaluating E. coli, C-HSSF performed better (p = 0.02). The non-woven blanket was subjected to weekly analysis using a Clark-type amperometric microsensor (diameter < 20 µm), which measured dissolved oxygen (DO) concentration in the adherent biofilm. DO microprofiles illustrated a variation in biofilm growth, which were associated with a progressive increase in the HSSF efficiency. The maximum DO depletion value measured during several months of operation showed no significant difference between I-HSSF and C-HSSF (p = 0.98). The microsensor measurements provided unprecedented results in real time. These results can help to understand the efficiency of the filter in relation to the biofilm growth, the dissolved oxygen depletion and turbidity removal.

Redox stratification within cryoconite granules influences the nitrogen cycle on glaciers.

Cryoconite granules are naturally occurring microbial structures on glacier surfaces worldwide. They play a key role in carbon and nitrogen cycling in glacier ecosystems and can accelerate the melting of snow and ice. However, detailed mechanism of nitrogen cycling in cryoconite granules remains unclear. Here, we demonstrate that redox stratification affects the spatial distribution of N cycling processes in cryoconite granules. Based on microsensor measurements for O2, NH4+, NO2- and NO3-, we identified the presence of fine-scale redox stratification within cryoconite granules. Cyanobacteria at the surface layer of the granules created oxic conditions, whereas the inner core of the granules was anoxic. Metatranscriptomic analyses indicated the active occurrences of nitrification in the inner core, whereas denitrification actively occurred both in the inner core and the surface layer of the granules. Cyanobacteria in the inner core of the granules were inactive, and likely dead and being degraded, providing carbon and nitrogen to support nitrifiers and denitrifiers. Quantities of nitrification genes/transcripts were greater in large cryoconite granules than small ones, most likely because nitrogen substrates were more abundantly present in the inner core of large granules due to distinct redox stratification. Our results suggest that the development of a granular structure of cryoconite granules can largely affect carbon and nitrogen cycling on glaciers.

Vertical Migration Optimizes Photosynthetic Efficiency of Motile Cyanobacteria in a Coastal Microbial Mat

Microbial mats are diverse and stratified microbial biofilm communities characterized by steep gradients in light, temperature and chemical parameters. Their high optical density creates a competition for light among phototrophic microalgae and bacteria residing in the uppermost mat layers. Strategies to counter such resource limitation include metabolic investment in protective and light-harvesting pigments enabling exploitation of separate niches in terms of irradiance and spectral composition, or investment in motility to enable migration to an optimal light microenvironment. We used microsensor measurements of light, temperature and gross photosynthesis in coastal microbial mats dominated by motile cyanobacteria and colorless sulfur bacteria to study how migration affected their radiative energy-budgets and relative photosynthetic efficiency. The optical density of the microbial mat was extremely high, and >99% of incident irradiance of visible light (400-700 nm) was attenuated <0.4 mm below the surface. While energy conservation efficiency did not change dramatically with previous light acclimation, vertical profiles of photosynthetic efficiency showed a shift in the position of maximum efficiency of ~0.2 mm, depending on light treatment. Besides avoidance of unfavorable chemical conditions such as high sulfide levels, vertical migration over short distances thus enable cyanobacteria to track zones with optimal light exposure thereby efficiently counteracting detrimental effects of excessive light at the surface and insufficient light deeper in the mat.

From Plant to Paddy—How Rice Root Iron Plaque Can Affect the Paddy Field Iron Cycling

Iron plaque on rice roots represents a sink and source of iron in paddy fields. However, the extent of iron plaque in impacting paddy field iron cycling is not yet fully deciphered. Here, we followed iron plaque formation during plant growth in laboratory-controlled setups containing a transparent soil matrix. Using image analysis, microsensor measurements, and mineral extractions, we demonstrate that radial oxygen loss (ROL) is the main driver for rhizosphere iron oxidation. While O2 was restricted to the vicinity of roots, root tips showed highest spatio-temporal variation in ROL (&lt;5–50 µM) following diurnal patterns. Iron plaque covered &gt;30% of the total root surface corresponding to 60–180 mg Fe(III) per gram dried root and gradually transformed from low-crystalline minerals (e.g., ferrihydrite) on root tips, to &gt;20% higher-crystalline minerals (e.g., goethite) within 40 days. Iron plaque exposed to an Fe(III)-reducing Geobacter spp. culture resulted in 30% Fe(II) remobilization and &gt;50% microbial transformation to Fe(II) minerals (e.g., siderite, vivianite, and Fe–S phases) or persisted by &gt;15% as Fe(III) minerals. Based on the collected data, we estimated that iron plaque formation and reductive dissolution can impact more than 5% of the rhizosphere iron budget which has consequences for the (im)mobilization of soil contaminants and nutrients.

Influence of Physical Perturbation on Fe(II) Supply in Coastal Marine Sediments.

Iron (Fe) biogeochemistry in marine sediments is driven by redox transformations creating Fe(II) and Fe(III) gradients. As sediments are physically mixed by wave action or bioturbation, Fe gradients re-establish regularly. In order to identify the response of dissolved Fe(II) (Fe2+) and Fe mineral phases toward mixing processes, we performed voltammetric microsensor measurements, sequential Fe extractions, and Mössbauer spectroscopy of 12 h light-dark cycle incubated marine coastal sediment. Fe2+ decreased during 7 days of undisturbed incubation from approximately 400 to 60 μM. In the first 2-4 days of incubation, Fe2+ accumulated up to 100 μM in the top 2 mm due to Fe(III) photoreduction. After physical perturbation at day 7, Fe2+ was re-mobilized reaching concentrations of 320 μM in 30 mm depth, which decreased to below detection limit within 2 days afterward. Mössbauer spectroscopy showed that the relative abundance of metastable iron-sulfur mineral phases (FeSx) increased during initial incubation and decreased together with pyrite (FeS2) after perturbation. We show that Fe2+ mobilization in marine sediments is stimulated by chemical changes caused by physical disturbances impacting the Fe redox distribution. Our study suggests that, in addition to microbial and abiotic Fe(III) reduction, including Fe(III) photoreduction, physical mixing processes induce chemical changes providing sediments and the inhabiting microbial community with Fe2+.

Fe(III) Photoreduction Producing Feaq2+ in Oxic Freshwater Sediment

Iron(III) (Fe(III)) photoreduction plays an important role in Fe cycling and Fe(II) bioavailability in the upper ocean. Although well described for water columns, it is currently unknown to what extent light impacts the production of dissolved Fe(II) (Fe2+) in aquatic sediments. We performed high-resolution voltammetric microsensor measurements and demonstrated light-induced Fe2+ release in freshwater sediments from Lake Constance. Fe2+ concentrations increased up to 40 μM in the top 3 mm of the sediment during illumination in the visible range of light (400-700 nm), even in the presence of oxygen (100-280 μM). The Fe2+ release was strongly dependent on the organic matter content of the sediment. A lack of photoreduced Fe2+ was measured in sediments with concentrations of organic carbon <6 mg L-1. The simultaneous presence of sedimentary Fe(III) photoreduction besides microbial and abiotic Fe2+ oxidation by oxygen suggests an active Fe redox cycling in the oxic and photic zone of aquatic sediments. Here, we provide evidence for a relevant contribution of Fe(III) photoreduction to the bio-geochemical Fe redox cycle in aquatic freshwater sediments.

Mineral iron dissolution in Trichodesmium colonies: The role of O2 and pH microenvironments

AbstractColonies of the N2‐fixing cyanobacterium Trichodesmium can harbor distinct chemical microenvironments that may assist the colonies in acquiring mineral iron from dust. Here, we characterized O2 and pH gradients in and around Trichodesmium colonies by microsensor measurements on &gt; 170 colonies collected in the Gulf of Eilat over ∼ 2 months. O2 concentrations and pH values in the center of single colonies decreased in the dark due to respiration, reaching minimum values of 70 μmol L−1 and 7.7, whereas in the light, O2 and pH increased due to photosynthesis, reaching maximum values of 410 μmol L−1 and 8.6. Addition of dust and bacteria and increasing colony size influenced O2 and pH levels in the colonies, yet values remained within the range observed in single natural colonies. However, lower values down to 60 μmol L−1 O2 and pH 7.5 were recorded in the dark in dense surface accumulations of Trichodesmium. Using radiolabelled ferrihydrite, we examined the effect of these conditions on mineral iron dissolution and availability to Trichodesmium. Dark‐incubated colonies did not acquire iron from ferrihydrite faster than light‐incubated colonies, indicating that the dark‐induced decrease in pH and O2 within single colonies is too small to significantly increase mineral iron bioavailability. Yet, ligand‐promoted dissolution of ferrihydrite, a mechanism likely applied by Trichodesmum for acquiring mineral iron, did increase at the lower pH levels observed in surface accumulations. Thus, Trichodesmium surface blooms in their final stage may harbor chemical conditions that enhance the dissolution and bioavailability of mineral iron to the associated microbial community.

In situ Measurements of pH, CA2+, and Dic Dynamics within the Extrapallial Fluid of the Ocean Quahog Arctica islandica

This study investigated to what extent the extrapallial fluid (EPF) of the marine bivalve Arctica islandica (Linneaus, 1767) is involved in shell formation. With in situ pH microscopy, pH gradients were identified between inner shell surface and outer mantle epithelium (OME). pH at the OMEvaried rapidly between neutral and values above 9, suggesting active H+ pumping. Microsensor measurements showed also remarkable short-term dynamics in pH and Ca2+ concentrations, again suggesting active ion pumping. Further focus was on pH, Ca2+, and dissolved inorganic carbon dynamics within the EPF to determine whether calcium carbonate precipitation is possible within the EPF. The data show that the bulk of the inner EPF rarely reaches calcium carbonate saturation and, thus, cannot be the site of shell formation. At the OME surface, however, pH levels of up to 9.5 were observed, corresponding to a 30-fold carbonate supersaturation. Thus, ion pumping by the OME can drive calcification when the OME is just a few mm distant from the inner shell surface, as it is the case in the outer EPF.

Radiative Energy Budgets in a Microbial Mat Under Different Irradiance and Tidal Conditions.

Irradiance and temperature variations during tidal cycles modulate microphytobenthic primary production potentially by changing the radiative energy balance of photosynthetic mats between immersion and emersion and thus sediment daily net metabolism. To test the effect of tidal stages on the radiative energy budget, we used microsensor measurements of oxygen, temperature, and scalar irradiance to estimate the radiative energy budget in a coastal photosynthetic microbial mat during immersion (constant water column of 2cm) and emersion under increasing irradiance. Total absorbed light energy was higher in immersion than emersion, due to a lower reflectance of the microbial mat, while most (> 97%) of the absorbed light energy was dissipated as heat irrespective of tidal conditions. During immersion, the upward heat flux was higher than the downward one, whereas the opposite occurred during emersion. At highest photon irradiance (800μmolphotonm-2s-1), the sediment temperature increased ~ 2.5°C after changing the conditions from immersion to emersion. The radiative energy balance showed that less than 1% of the incident light energy (PAR, 400-700nm) was conserved by photosynthesis under both tidal conditions. At low to moderate incident irradiances, the light use efficiency was similar during the tidal stages. In contrast, we found an ~ 30% reduction in the light use efficiency during emersion as compared to immersion under the highest irradiance likely due to the rapid warming of the sediment during emersion and increased non-photochemical quenching. These changes in the photosynthetic efficiency and radiative energy budget could affect both primary producers and temperature-dependent bacterial activity and consequently daily net metabolism rates having important ecological consequences.

Oxygen Consumption and Sulfate Reduction in Vegetated Coastal Habitats: Effects of Physical Disturbance

Vegetated coastal habitats (VCHs), such as mangrove forests, salt marshes and seagrass meadows, have the ability to capture and store carbon in the sediment for millennia, and thus have high potential for mitigating global carbon emissions. Carbon sequestration and storage is inherently linked to the geochemical conditions created by a variety of microbial metabolisms, where physical disturbance of sediments may expose previously anoxic sediment layers to oxygen (O2), which could turn them into carbon sources instead of carbon sinks. Here, we used O2, hydrogen sulfide (H2S) and pH microsensors to determine how biogeochemical conditions, and thus aerobic and anaerobic metabolic pathways, vary across mangrove, salt marsh and seagrass sediments (case study from the Sydney area, Australia). We measured the biogeochemical conditions in the top 2.5 cm of surface (0–10 cm depth) and experimentally exposed deep sediments (>50 cm depth) to simulate undisturbed and physically exposed sediments, respectively, and how these conditions may affect carbon cycling processes. Mangrove surface sediment exhibited the highest rates of O2 consumption and sulfate (SO42-) reduction based on detailed microsensor measurements, with a diffusive O2 uptake rate of 102 mmol O2 m-2 d-1 and estimated sulfate reduction rate of 57 mmol Stot2- m-2 d-1. Surface sediments (0–10 cm) across all the VCHs generally had higher O2 consumption and estimated sulfate reduction rates than deeper layers (>50 cm depth). O2 penetration was <4 mm for most sediments and only down to ∼1 mm depth in mangrove surface sediments, which correlated with a significantly higher percent organic carbon content (%Corg) within sediments originating from mangrove forests as compared to those from seagrass and salt marsh ecosystems. Additionally, pH dropped from 8.2 at the sediment/water interface to <7–7.5 within the first 20 mm of sediment within all ecosystems. Prevailing anoxic conditions, especially in mangrove and seagrass sediments, as well as sediment acidification with depth, likely decreased microbial remineralisation rates of sedimentary carbon. However, physical disturbance of sediments and thereby exposure of deeper sediments to O2 seemed to stimulate aerobic metabolism in the exposed surface layers, likely reducing carbon stocks in VCHs.