Microcosm Study Research Articles

Assessing the effects of microwave heat disturbance on soil microbial communities in Australian agricultural environments: A microcosm study

Weeds reduce agricultural productivity by competing for resources intended for crops. Recently, the deactivation of weed seedbanks by microwave (MW) radiation has been developed as a chemical-free weed management practice. It is unknown, if these extreme heat disturbances permanently alter the soil microbiome of different farming systems. We performed a microcosm experiment to quantify the immediate and short-term effect of MW heating on the soil microbiome. We exposed three different soil types (representing dryland, temperate and irrigated farming systems) to MW heating, and monitored the fungal and bacterial communities over a month of recovery. Bacterial and fungal community composition were strongly dependent on the soil of origin. Following MW heating, bacterial and fungal richness decreased in all soils and did not recover during the period studied (four weeks). Notably, in all soils, bacterial communities became more dissimilar to each other following disturbance, but in fungi, this depended on the soil of origin. These results highlight the importance of considering the resistance and recovery of the resident soil microbiota in developing long-term sustainable MW-based weed management system.

Mycotransformation of Commercial Grade Cypermethrin Dispersion by Aspergillus terreus PDB-B Strain Isolated from Lake Sediments of Kulamangalam, Madurai.

A fungal isolate Aspergillus terreus PDB-B (accession number: MT774567.1), which could tolerate up to 500 mg/L of cypermethrin, was isolated from the lake sediments of Kulamangalam tropical lake, Madurai, and identified by internal transcribed spacer (ITS) sequencing followed by phylogenetic analysis. The biotransformation potential of the strain was compared with five other strains (A, J, UN2, M1 and SM108) as a consortium, which were tentatively identified as Aspergillus glaucus, Aspergillus niger, Aspergillus flavus, Aspergillus terreus, and Aspergillus flavus, respectively. Batch culture and soil microcosm studies were conducted to explore biotransformation using plate-based enzymatic screening and GC-MS. A mycotransformation pathway was predicted based on a comparative analysis of the transformation products (TPs) obtained. The cytotoxicity assay revealed that the presence of (3-methylphenyl) methanol and isopropyl ether could be relevant to the high rate of lethality.

The potential of soil microbial communities to transform deoxynivalenol in agricultural soils-a soil microcosm study.

Infestation of cereal fields with toxigenic Fusarium species is identified as an environmental source for the mycotoxin deoxynivalenol (DON). During rain events, DON may be washed off from infested plants and enter the soil, where microbial transformation may occur. Although some studies showed DON transformation potential of soil microbial communities in liquid soil extracts, these findings can not be transferred to environmental conditions. Accordingly, microbial transformation of DON in soil has to be investigated under realistic conditions, e.g., microcosms mimicking field situations. In this study, we investigated the potential of soil microbial communities to transform DON in six different agricultural soils at two levels (0.5 and 5 µg g-1). The dissipation and the formation of transformation products were investigated in a period of 35 days and compared to a sterilized control. In addition, we measured soil respiration and applied the phospholipid-derived fatty acid (PLFA) analysis to assess whether soil microbial community characteristics are related to the microbial transformation potential. Dissipation of DON in non-sterilized soils was fast (50% dissipation within 0.6-3.7 days) compared to the sterile control where almost no dissipation was observed. Thus, dissipation was mainly attributed to microbial transformation. We verified that small amounts of DON are transformed to 3-keto-deoxynivalenol (3-keto-DON) and 3-epi-deoxynivalenol (3-epi-DON), which were not detectable after 16-day incubation, indicating further transformation processes. There was a trend towards faster transformation in soils with active and large microbial communities and low fungi-to-bacteria ratio.

Mycorrhizosphere bacteria inhibit greenhouse gas emissions from microplastics contaminated soil by regulating soil enzyme activities and microbial community structure

Microplastics (MPs) accumulation in terrestrial ecosystems can affect greenhouse gases (GHGs) production by altering microbial and soil structure. Presently, research on the MPs effect on plants is not consistent, and underlying molecular mechanisms associated with GHGs are yet unknown. For the first time, we conducted a microcosm study to explore the impact of MPs addition (Raw vs. aged) and Trichoderma longibrachiatum and Bacillus subtilis inoculation (Sole vs. combination) on GHGs emission, soil community structure, physiochemical properties, and enzyme activities. Our results indicated that the addition of aged MPs considerably enhanced the GHGs emissions (N2O (+16%) and CO2 (+21%), respectively), C and N cycling gene expression, microbial biomass carbon, and soil physiochemical properties than raw MPs. However, the soil microbial community structure and enzyme activities were enhanced in raw MPs added treatments, irrespective of the MPs type added to soil. However, microbial inoculation significantly reduced GHGs emission by altering the expression of C and N cycling genes in both types of MPs added treatments. The soil microbial community structure, enzymes activities, physiochemical properties and microbial biomass carbon were enhanced in the presence of microbial inoculation in both type of MPs. Among sole and combined inoculation of Trichoderma and Bacillus subtilis, the co-applied Trichoderma and Bacillus subtilis considerably reduced the GHGs emission (N2O (−64%) and CO2 (−61%), respectively) by altering the expression of C and N cycling genes regardless of MPs type used. The combined inoculation also enhanced soil enzyme activities, microbial community structure, physiochemical properties and microbial biomass carbon in both types of MPs treatment. Our findings provide evidence that polyethylene MPs likely pose a high risk of GHGs emission while combined application of Trichoderma and Bacillus subtilis significantly reduced GHGs emission by altering C and N cycling gene expression, soil microbial community structure, and enzyme activities under MPs pollution in a terrestrial ecosystem.

Bioremediation of trichloroethylene-contaminated groundwater using green carbon-releasing substrate with pH control capability

In this research, a sustainable substrate, termed green and long-lasting substrate (GLS), featuring a blend of emulsified substrate (ES) and modified rice husk ash (m-RHA) was devised. The primary objective was to facilitate the bioremediation of groundwater contaminated with trichloroethylene (TCE) using innovative GLS for slow carbon release and pH control. The GLS was concocted by homogenizing a mixture of soybean oil, surfactants (Simple Green™ and soya lecithin), and m-RHA, ensuring a gradual release of carbon sources. The hydrothermal synthesis was applied for the production of m-RHA production. The analyses demonstrate that m-RHA were uniform sphere-shape granules with diameters in micro-scale ranges. Results from the microcosm study show that approximately 83% of TCE could be removed (initial TCE concentration = 7.6 mg/L) with GLS supplement after 60 days of operation. Compared to other substrates without RHA addition, higher TCE removal efficiency was obtained, and higher Dehalococcoides sp. (DHC) population and hydA gene (hydrogen-producing gene) copy number were also detected in microcosms with GLS addition. Higher hydrogen concentrations enhanced the DHC growth, which corresponded to the increased DHC populations. The addition of the GLS could provide alkalinity at the initial stage to neutralize the acidified groundwater caused by the produced organic acids after substrate biodegradation, which was advantageous to DHC growth and TCE dechlorination. The addition of m-RHA reached an increased TCE removal efficiency, which was due to the fact that the m-RHA had the zeolite-like structure with a higher surface area and lower granular diameter, and thus, it resulted in a more effective initial adsorption effect. Therefore, a significant amount of TCE could be adsorbed onto the surface of m-RHA, which caused a rapid TCE removal through adsorption. The carbon substrates released from m-RHA could then enhance the subsequent dechlorination. The developed GLS is an environmentally-friendly and green substrate.

Urea amendment decouples nitrification in hydrocarbon contaminated Antarctic soil

Hydrocarbon contaminated soils resulting from human activities pose a risk to the natural environment, including in the Arctic and Antarctic. Engineered biopiles constructed at Casey Station, Antarctica, have proven to be an effective strategy for remediating hydrocarbon contaminated soils, with active ex-situ remediation resulting in significant reductions in hydrocarbons, even in the extreme Antarctic climate. However, the use of urea-based fertilisers, whilst providing a nitrogen source for bioremediation, has also altered the natural soil chemistry leading to increases in pH, ammonium and nitrite. Monitoring of the urea amended biopiles identified rising levels of nitrite to be of particular interest, which misaligns with the long term goal of reducing contaminant levels and returning soil communities to a ‘healthy’ state.Here, we combine amplicon sequencing, microfluidic qPCR on field samples and laboratory soil microcosms to assess the impact of persistent nitrite accumulation (up to 60 months) on nitrifier abundances observed within the Antarctic biopiles. Differential inhibition of ammonia oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB) Nitrobacter and Nitrospira in the cold, urea treated, alkaline soils (pH 8.1) was associated with extensive nitrite accumulation (76 ± 57 mg N/kg at 60 months). When the ratio of Nitrospira:AOB dropped below ∼1:1, Nitrobacter was completely inhibited or absent from the biopiles, and nitrite accumulated. Laboratory soil microcosms (incubated at 7 °C and 15 °C for 9 weeks) reproduced the pattern of nitrite accumulation in urea fertilized soil at the lower temperature, consistent with our longer-term observations from the Antarctic biopiles, and with other temperature-controlled microcosm studies. Diammonium phosphate amended soil did not exhibit nitrite accumulation, and could be a suitable alternative biostimulant to avoid excessive nitrite build-up.

Enhanced Strontium Removal through Microbially Induced Carbonate Precipitation by Indigenous Ureolytic Bacteria.

Microbial ureolysis offers the potential to remove metals including Sr2+ as carbonate minerals via the generation of alkalinity coupled to NH4+ and HCO3- production. Here, we investigated the potential for bacteria, indigenous to sediments representative of the U.K. Sellafield nuclear site where 90Sr is present as a groundwater contaminant, to utilize urea in order to target Sr2+-associated (Ca)CO3 formation in sediment microcosm studies. Strontium removal was enhanced in most sediments in the presence of urea only, coinciding with a significant pH increase. Adding the biostimulation agents acetate/lactate, Fe(III), and yeast extract to further enhance microbial metabolism, including ureolysis, enhanced ureolysis and increased Sr and Ca removal. Environmental scanning electron microscopy analyses suggested that coprecipitation of Ca and Sr occurred, with evidence of Sr associated with calcium carbonate polymorphs. Sr K-edge X-ray absorption spectroscopy analysis was conducted on authentic Sellafield sediments stimulated with Fe(III) and quarry outcrop sediments amended with yeast extract. Spectra from the treated Sellafield and quarry sediments showed Sr2+ local coordination environments indicative of incorporation into calcite and vaterite crystal structures, respectively. 16S rRNA gene analysis identified ureolytic bacteria of the genus Sporosarcina in these incubations, suggesting they have a key role in enhancing strontium removal. The onset of ureolysis also appeared to enhance the microbial reduction of Fe(III), potentially via a tight coupling between Fe(III) and NH4+ as an electron donor for metal reduction. This suggests ureolysis may support the immobilization of 90Sr via coprecipitation with insoluble calcium carbonate and cofacilitate reductive precipitation of certain redox active radionuclides, e.g., uranium.

Effect of some physicochemical parameters on the decay rate of enteric bacteria isolated from River Owena, Nigeria

The significance of water in public health cannot be overemphasized. In Nigeria, many people living along the courses of water bodies still source and drink from the rivers and streams. There is, therefore, the need to determine the load of contamination and effect of pH and salinity on the decay rate of enteric bacteria in water samples from River Owena, Owena, Nigeria, in order to develop adequate water quality management. Water samples from River Owena were collected from three sampling points (inflow, middle course and the outflow) along the River Owena, Nigeria. The load of enteric bacteria in the water samples was enumerated using membrane filtration technique. The physicochemical parameters of the water samples were determined using standard methods. The incidence and prevalence of gastroenteritis in the community around River Owena was determined using a structured questionnaire. Microcosm studies were used to determine the decay rate of enteric bacteria at varying salinity and pH. Canonical correlation analysis was used to describe the relationship between the load of enteric bacteria and the incidence and prevalence of gastroenteritis in the community around River Owena. The incidence and prevalence of gastroenteritis in the community around River Owena were estimated to be 0.75 and 0.51, respectively. Escherichia coli had positive relationships with incidence (r = 0.76) and prevalence (r = 0.65). Similarly, faecal coliforms had positive relationships with incidence (r = 0.82) and prevalence of gastroenteritis (r = 0.67), while enterococci showed positive relationship with incidence (r = 0.59) and prevalence of gastroenteritis (r = 0.87). Increase in pH and salinity increased the decay rate of enteric bacteria thereby reducing the growth of enteric bacteria, the optimum pH for the growth and survival of enteric bacteria ranged between pH 5.0 and pH 7.0. The optimum salinity for the growth of enteric bacteria isolated in water samples from River Owena ranged between 10 and 50% salinity. Findings revealed high levels of faecal contamination at the different representative monitoring points on River Owena, pH and salinity influenced the load and decay rate of enteric bacteria in water from River Owena.

Vertical Variation in Temperature Sensitivity of Soil Organic Carbon Mineralization in Changbai Mountain, China: A Microcosm Study

Global warming may have a complex effect on soil carbon mineralization across mountain elevations. Elevational zonation governs the soil natural composition of mountain ecosystems due to different temperature conditions. Understanding the response of carbon mineralization to climate change, particularly the temperature sensitivity (Q10), is crucial for assessing the effects within mountain vertical zones. Despite this, the spatial variation and influencing factors of organic carbon mineralization at these zones remain unclear. We conducted a microcosm study in Changbai Mountain, Northeast China, to examine the response of soil carbon mineralization to warming across six different elevations (1000, 1400, 1600, 1800, 2000, and 2200 m). The soil samples were incubated at 5 °C, 15 °C, and 25 °C for 71 days. The results showed a significant elevation-dependent increase in the rate of soil organic carbon mineralization (Cmin), with the birch forest exhibiting the highest values. Q10 varied across elevations, with the highest value (1.57) in the coniferous forest (1400 m), and the lowest (1.32) in the tundra (2200 m). The potential of organic carbon mineralization (C0) demonstrated an increasing trend from 5 °C to 25 °C across the six elevations. Elevation and soil properties, especially pH, bulk density (BD), and dissolved organic carbon (DOC), emerged as critical factors influencing organic carbon mineralization; notably, elevation played a crucial role. In summary, our findings highlight the common regulatory role of elevation and soil properties in soil carbon mineralization dynamics within the vertical zones. Future research should pay attention to the distinctive features of vegetation zones to analyze how mountain carbon pool function responds to global climate change.

Dibutyl phthalate degradation by Paenarthrobacter ureafaciens PB10 through downstream product myristic acid and its bioremediation potential in contaminated soil

Dibutyl phthalate (DBP) is a widely used plasticizer to make plastic flexible and long-lasting. It is easily accessible in a broad spectrum of environments as a result of the rising level of plastic pollution. This compound is considered a top-priority toxicant and persistent organic pollutant by international environmental agencies for its endocrine disruptive and carcinogenic propensities. To mitigate the DBP in the soil, one DBP-degrading bacterial strain was isolated from a plastic-polluted landfill and identified as Paenarthrobacter ureafaciens PB10 by 16S rRNA gene sequence-based homology. The strain was found to develop a distinct transparent halo zone around grown colonies on an agar plate supplemented with DBP. The addition of yeast extract (100 mg/L) as a nutrient source accelerated cell biomass production and DBP degradation rate; however, the presence of glucose suppressed DBP degradation by the PB10 strain without affecting its ability to proliferate. The strain PB10 was efficient in eliminating DBP under various pH conditions (5.0–8.0). Maximum cell growth and degradation of 99.49% at 300 mg/L DBP were achieved in 72 h at the optimized mineral salt medium (MS) conditions of pH 7.0 and 32 °C. Despite that, when the concentration of DBP rose to 3000 mg/L, the DBP depletion rate was measured at 79.34% in 72 h. Some novel intermediate metabolites, like myristic acid, hexadecanoic acid, stearic acid, and the methyl derivative of 4-hydroxyphenyl acetate, along with monobutyl phthalate and phthalic acid, were detected in the downstream degradation process of DBP through GC-MS profiling. Furthermore, in synchronization with native soil microbes, this PB10 strain successfully removed a notable amount of DBP (up to 54.11%) from contaminated soil under microcosm study after 10 d. Thus, PB10 has effective DBP removal ability and is considered a potential candidate for bioremediation in DBP-contaminated sites.

DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity

Although copper (Cu2+) is a micronutrient, the metal may be toxic if present in high concentrations in soil ecosystems and subsequently affect various organisms, ranging from microorganisms to earthworms. We performed a microcosm study with an array of Cu2+ concentrations, with a specific focus on Cercozoa, an important protozoan group in most soil food webs. Research on Cercozoa is still scarce in terms of both diversity and ecology; hence, to explore this group in more depth, we used high-throughput sequencing to detect Cu2+ induced community changes. Increased levels of Cu2+ caused a shift in the cercozoan community, and we observed decreased cercozoan relative abundance across the majority of orders, families and genera. Due to their key role in soil food webs, especially as bacterial predators and providers of nutrients to plants, the reduction of cercozoan abundance and diversity may seriously affect soil functionality. Our results indicate that the increase of Cu2+ concentrations in the soil could potentially have this effect and the consequences need exploration.

Spring protistan communities in response to warming in the northeastern East China Sea

The northeastern East China Sea is a highly dynamic marine ecosystem influenced by seasonally varying water mass properties. However, despite being among the world's fastest-warming ocean, there has been limited investigation into the impacts of warming on protistan communities. We collected seawater from two stations (E42 and E46) with different natural protist communities and environmental attributes to investigate the acclimation of the two communities to artificially elevated temperatures (ambient T, +2, and +4 °C). Nutrient and Chl-a conditions reflected oceanographic differences, providing insights into protistan community dynamics. Notably, small-sized autotrophic protists prevailed in the phosphate-deficient E42 community, with mid-incubation heterotrophic conversions. Higher temperatures exacerbated the effects of the P deficiency on the E42 community. While the proportions of Bacillariophyta increased only in the nutrient-balanced E46 communities, those of mixotrophic dinoflagellates increased with elevated temperature, regardless of P deficiency, suggesting that mixotrophy likely aids adaptation in changing marine environments. In summary, the findings of this microcosm study illuminate the potential modulation of spring protistan communities in the northeastern East China Sea under anticipated future warming.

Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter.

Blooms of gelatinous zooplankton, an important source of protein-rich biomass in coastal waters, often collapse rapidly, releasing large amounts of labile detrital organic matter (OM) into the surrounding water. Although these blooms have the potential to cause major perturbations in the marine ecosystem, their effects on the microbial community and hence on the biogeochemical cycles have yet to be elucidated. We conducted microcosm experiments simulating the scenario experienced by coastal bacterial communities after the decay of a ctenophore (Mnemiopsis leidyi) bloom in the northern Adriatic Sea. Within 24 h, a rapid response of bacterial communities to the M. leidyi OM was observed, characterized by elevated bacterial biomass production and respiration rates. However, compared to our previous microcosm study of jellyfish (Aurelia aurita s.l.), M. leidyi OM degradation was characterized by significantly lower bacterial growth efficiency, meaning that the carbon stored in the OM was mostly respired. Combined metagenomic and metaproteomic analysis indicated that the degradation activity was mainly performed by Pseudoalteromonas, producing a large amount of proteolytic extracellular enzymes and exhibiting high metabolic activity. Interestingly, the reconstructed metagenome-assembled genome (MAG) of Pseudoalteromonas phenolica was almost identical (average nucleotide identity >99%) to the MAG previously reconstructed in our A. aurita microcosm study, despite the fundamental genetic and biochemical differences of the two gelatinous zooplankton species. Taken together, our data suggest that blooms of different gelatinous zooplankton are likely triggering a consistent response from natural bacterial communities, with specific bacterial lineages driving the remineralization of the gelatinous OM.IMPORTANCEJellyfish blooms are increasingly becoming a recurring seasonal event in marine ecosystems, characterized by a rapid build-up of gelatinous biomass that collapses rapidly. Although these blooms have the potential to cause major perturbations, their impact on marine microbial communities is largely unknown. We conducted an incubation experiment simulating a bloom of the ctenophore Mnemiopsis leidyi in the Northern Adriatic, where we investigated the bacterial response to the gelatinous biomass. We found that the bacterial communities actively degraded the gelatinous organic matter, and overall showed a striking similarity to the dynamics previously observed after a simulated bloom of the jellyfish Aurelia aurita s.l. In both cases, we found that a single bacterial species, Pseudoalteromonas phenolica, was responsible for most of the degradation activity. This suggests that blooms of different jellyfish are likely to trigger a consistent response from natural bacterial communities, with specific bacterial species driving the remineralization of gelatinous biomass.

Bacterivorous nematodes decipher microbial iron siderophores as prey cue in predator-prey interactions.

The minimal levels of biological-available iron in the environment impose growth limitation on all living organisms. Microbes often secrete high iron-binding-affinity siderophores at high concentrations for scavenging iron from the iron-limited habitats. However, the high prevalence of siderophores released by bacteria into the environment raises an intriguing question whether this chemical cue can be detected by bacterivorous predators. Here, we show that the bacterivorous Caenorhabditis elegans nematode could employ its chemosensory receptor Odr-10 to detect pyoverdine, an iron siderophore secreted by an environmental bacterium, Pseudomonas aeruginosa. This enabled the nematode predator to migrate toward the prey. Our soil microcosm study showed that the detection of pyoverdine and subsequent feeding of P. aeruginosa prey by C. elegans could lead to the expansion of its population. These results showed that siderophores are a prey chemical cue by predators, with key implications in predator-prey interactions.

Homogenization of bacterial plastisphere community in soil: a continental-scale microcosm study.

Microplastics alter niches of soil microbiota by providing trillions of artificial microhabitats, termed the "plastisphere." Because of the ever-increasing accumulation of microplastics in ecosystems, it is urgent to understand the ecology of microbes associated with the plastisphere. Here, we present a continental-scale study of the bacterial plastisphere on polyethylene microplastics compared with adjacent soil communities across 99 sites collected from across China through microcosm experiments. In comparison with the soil bacterial communities, we found that plastispheres had a greater proportion of Actinomycetota and Bacillota, but lower proportions of Pseudomonadota, Acidobacteriota, Gemmatimonadota, and Bacteroidota. The spatial dispersion and the dissimilarity among plastisphere communities were less variable than those among the soil bacterial communities, suggesting highly homogenized bacterial communities on microplastics. The relative importance of homogeneous selection in plastispheres was greater than that in soil samples, possibly because of the more uniform properties of polyethylene microplastics compared with the surrounding soil. Importantly, we found that the degree to which plastisphere and soil bacterial communities differed was negatively correlated with the soil pH and carbon content and positively related to the mean annual temperature of sampling sites. Our work provides a more comprehensive continental-scale perspective on the microbial communities that form in the plastisphere and highlights the potential impacts of microplastics on the maintenance of microbial biodiversity and ecosystem functioning.

Dynamics of cadmium and arsenic at the capillary fringe of paddy soils: A microcosm study based on high-resolution porewater analysis

Arsenic (As) and cadmium (Cd) are prevalent in paddy soils, posing potential threats to food safety and public health. The concentrations of soluble ​As and Cd are sensitive to moisture-driven changes in soil pH and Eh, which is rarely described at the critical dry-wet interface. Here, tempo-spatial changes of soluble As and Cd were captured by In-situ Porewater Iterative samplers at the capillary fringe that extended from saturated to unsaturated moisture gradient at the millimeter scale (60 ​mm profile in depth) through two episodic dry-wet cycles (55 days in total). The As and Cd concentrations showed less significant fluctuation in second cycle compared to the initial dry-wet cycle. The study also revealed at the capillary fringe profile (20–40 ​mm), the As concentrations increased from 4.6 μg L−1 in unsaturated soils to 13.5 μg L−1 in saturated soils, while Cd decreased from 3.3 to 0.2 μg L−1. This observed correlation was aligned with the vertical changes in soil Eh (+287 to +381 ​mV) and pH (3.42 to 6.07). This study found a distinct zone characterized by low As and low Cd concentrations, typically situated approximately 10–30 ​mm beneath the capillary fringe. Upon further analysis, it was determined that soil with an Eh of 249 ​mV and a pH of 4.3 potentially serves as an optimal environment for decreasing As and Cd levels in porewater. These findings suggest that it is feasible to reduce As and Cd concentration in the soil by implementing appropriate depth-controlled water management techniques.

The Potential Role of Sediment Iron and Sulfur Speciation in Seagrass Meadow Loss and Recovery

Oxidized iron (Fe) can reduce seagrass dieback when present in sufficient quantities in the sediment to fix sulfide as pyrite (FeS 2 ) or iron monosulfide (FeS). However, the oxidized Fe pool may become depleted over time as Fe is reduced and precipitated with sulfides. In this study, we estimated long-term variations in the speciation of solid forms of reduced and oxidized Fe along a eutrophication gradient in West Falmouth Harbor (WFH) (a temperate lagoon with substantial seagrass meadows) and conducted a 6-week microcosm study to assess the role of oxidized Fe in supporting seagrass recovery. We planted seagrass in sediments obtained from 2 WFH regions with differing Fe speciation. We found depletion of oxidized Fe over a decade following a seagrass dieback, even when the soluble sulfide levels decreased to concentrations unlikely to cause toxicity in seagrass. The continued absence of large concentrations of available oxidized Fe minerals in sediments, where most Fe was bound in FeS 2 , could impede the recovery of seagrass in formerly vegetated regions. Seagrass grown in sediments with low Fe:S ratios exhibited an increased probability of survival after 4 weeks. Field and laboratory results indicated that even when the soluble sulfide levels decrease after seagrass dieback, sediments may not be able to support seagrass recovery due to the legacy effects of eutrophication on the sediment Fe pool. However, we observed signs of reoxidation in the Fe pool within a few years of seagrass dieback, including a decrease in the total sediment S concentration, which could help spur recolonization.

Uncovering the Fungal Diversity and Biodeterioration Phenomenon on Archaeological Carvings of the Badami Cave Temples: A Microcosm Study.

The Badami Caves are a significant example of ancient Indian rock-cut architecture, dating back to the 6th century. These caves are situated in the Malaprabha River valley and are part of the candidate UNESCO World Heritage Site known as the "Evolution of Temple Architecture-Aihole-Badami-Pattadakal", which is considered to be the cradle of temple architecture in India. Our study aimed to investigate the diversity, distribution, and biodeterioration phenomena of the fungal communities present on the cave surfaces. The study also conducted a comprehensive analysis of fungal biodeterioration on the cave carvings. Utilizing specialized techniques, the dissolution of calcite, alterations in pH levels, and biomineralization capabilities of isolated fungal strains were monitored. Additionally, this study analyzed fungal acid production using high-performance liquid chromatography (HPLC). Our findings revealed that the major genera of fungi found on the cave surfaces included Acremonium, Curvularia, Cladosporium, Penicillium, and Aspergillus. These isolated fungi were observed to produce acids, leading to the dissolution of calcium carbonate and subsequent decrease in pH values. Notably, the dominant genus responsible for acid production and the promotion of biomineralization was Aspergillus. These discoveries provide valuable insight into the ecology and functions of fungi inhabiting stone surfaces, contributing to our understanding of how to preserve and protect sculptures from biodeterioration.

Sorption kinetics of heavy metals from aqueous solution using Spirogyra sp.: a microcosm study

Understanding the mechanisms by which algae communities respond to disturbances in the lotic aquatic environment that is polluted by heavy metals is important, considering that algae is a biotic component of waters that acts as a producer in the aquatic food chain which has the potential to bio-magnify. This study examines the influence of time, biomass weight, heavy metal concentration, sorption capacity, and efficient removal on epilithic periphyton as a bio-accumulator of Cr, Pb, and Ni. The experiment was conducted on a laboratory scale using a canal system with a length and width of 1.2 and 1.0 meters, respectively. The canal system contains 132 L of water, has a 1.2 m2 substrate and periphyton area, a depth of 0.09 – 0.10 m, and a current flow rate of 0.04 – 0.06 m/s. The dissolved Cr6+ initial concentration in the medium was 1.64 mg/L, Pb2+ and Ni2+ concentrations were 1.4 mg/L, and the adsorption process was studied for 24 hours. Based on microscope observations and functional group interpretation utilizing infrared spectra (FTIR), the periphyton community is dominated by Spirogyra sp., which has hydroxyl (O-H), carboxyl (C-H), and carbonyl (C-C and C=O) functional groups with the ability to binding heavy metals. The remaining quantities of Cr, Pb, and Ni in water were 0.43 mg/L (removal 69.29%), 0.05 mg/L (96.43% removal), and 0.03 mg/L (97.86% removal). Periphyton has a maximal sorption capacity of 1.019 mg Cr/g, 1.97 mg Pb/g, and 1.92 mg Ni/g. The sorption kinetics of Cr, Pb, and Ni follow a pseudo-second-order model with k2 = 1.686 x 10-2 g/mg.min for Cr, 4.516 x 10-3 g/mg.min for Pb, and 2.259 x 10-2 g/mg.min for Ni, with R2 of 0.965 for Cr and 0.971 for Pb and 0.972 for Ni. Periphyton can potentially play a role as a bio-accumulator in lotic habitats, adsorbing Cr, Pb, and Ni ions, according to this study.

Microcosm Study of the Effects of pH, Reductant and Sediment Type on Uranium Immobilization

Uranium mining by in-situ recovery (ISR) involves injecting dissolved oxygen (DO) into the subsurface to oxidize and solubilize uranium minerals (e.g., uraninite), and then pumping the groundwater to the surface and removing the uranium by ion exchange. After ISR mining operations are completed, the groundwater must be restored to baseline conditions. One promising new technology for restoring groundwater at ISR sites is to inject chemical reductants that can stimulate growth of indigenous iron- and sulfate-reducing bacteria that can also reduce and immobilize uranium. Although numerous studies have validated the general feasibility of this approach, significant uncertainty remains about the effects of groundwater pH, reductant type (particularly organic versus inorganic), and sediment type (particularly pre- leaching versus post-leaching). In this study, a 23 experimental factorial design was used to assess the effects of pH, reductant type, and sediment type on uranium immobilization in 160-mL serum-bottle sediment microcosms. The experimental results showed that both reductant type and sediment type have statistically significant effects on uranium immobilization