Types Of Microbes Research Articles

Human genetic associations of the airway microbiome in chronic obstructive pulmonary disease

Little is known about the relationships between human genetics and the airway microbiome. Deeply sequenced airway metagenomics, by simultaneously characterizing the microbiome and host genetics, provide a unique opportunity to assess the microbiome-host genetic associations. Here we performed a co-profiling of microbiome and host genetics with the identification of over 5 million single nucleotide polymorphisms (SNPs) through deep metagenomic sequencing in sputum of 99 chronic obstructive pulmonary disease (COPD) and 36 healthy individuals. Host genetic variation was the most significant factor associated with the microbiome except for geography and disease status, with its top 5 principal components accounting for 12.11% of the microbiome variability. Within COPD individuals, 113 SNPs mapped to candidate genes reported as genetically associated with COPD exhibited associations with 29 microbial species and 48 functional modules (P < 1 × 10−5), where Streptococcus salivarius exhibits the strongest association to SNP rs6917641 in TBC1D32 (P = 9.54 × 10−8). Integration of concurrent host transcriptomic data identified correlations between the expression of host genes and their genetically-linked microbiome features, including NUDT1, MAD1L1 and Veillonella parvula, TTLL9 and Stenotrophomonas maltophilia, and LTA4H and Haemophilus influenzae. Mendelian randomization analyses revealed a potential causal link between PARK7 expression and microbial type III secretion system, and a genetically-mediated association between COPD and increased relative abundance of airway Streptococcus intermedius. These results suggest a previously underappreciated role of host genetics in shaping the airway microbiome and provide fresh hypotheses for genetic-based host-microbiome interactions in COPD.

Extension of ultrafiltered cheese shelf life using edible coatings containing supercritical rosemary, thyme and coriander extracts as antimicrobial agents

Currently, supercritical extraction allows for the “green” isolation of plant antimicrobial components and their subsequent use in the food industry. The study aims to extend the shelf life of ultrafiltered cheese by using edible coatings containing supercritical fluid extracts (SFEs) of Rosmarinus officinalis L., Thymus vulgaris and Coriandrum sativum L. The SFEs chemical profiling was studied using GC-MS. Ten emulsion coating formulations were prepared using whey protein concentrate and the SFEs. The antimicrobial activity of coatings was assessed using well diffusion assay. Their effect on shelf life, physicochemical and sensory characteristics of the ultrafiltered cheese samples was investigated. GC/MS analysis of Rosmarinus officinalis L., Thymus vulgaris and Coriandrum sativum L. showed that 1,8-Cineol, m-Cymene, and Linalool are the major compounds with 35.4, 41.6, and 61.3 % respectively. The particle size of all formulations ranged from 157.3 to 453.7 nm and had a broad size distribution with a low Polydispersity Index values ranging from 0.35 to 0.49. The obtained Zeta potential values from −27.8 to −36.0 mV indicate the stability of the SFE-emulsion formulations. The antimicrobial trials showed that formulations, that mainly contained Thymus vulgaris, demonstrated more inhibition effect against all tested strains than other formulas with inhibition zone diameter ranged between 10.7 and 16.3 mm and followed by formulations, that mainly contained Rosmarinus officinalis L., with inhibition zones diameter between 6.7 and 11.7 mm depending on microbial type. Combining rosemary and coriander extracts synergistically enhanced their antimicrobial effect and extended the shelf life of cheese beyond 40 days.

Anti-obesity effects of Bifidobacterium lactis YGMCC2013 by promoting adipocyte thermogenesis and beige remodelling in association with gut microbiota

Obesity, a global public health challenge, is closely associated with gut microbiota alterations. Probiotics have the potential to prevent obesity, but their effectiveness can vary depending on the specific strain. This study focused on evaluating the anti-obesity and probiotic properties of four Bifidobacterium species isolated from healthy Chinese individuals in vitro. The findings indicated that Bifidobacterium lactis YGMCC2013 showed notable cholesterol assimilation ability, bile salt hydrolase activity, gastrointestinal tolerance, cellular adhesion, and production of short-chain fatty acids. The anti-obesity effect of YGMCC2013 was then assessed in mice fed a high-fat diet. The results demonstrated that YGMCC2013 reduced body and liver weight, adipose tissue hypertrophy and inflammation, and influenced specific microbial genera associated with adipose tissue characteristics. Notably, the study observed associations between certain microbial genera and different types of adipose tissue, indicating that YGMCC2013 may impact the balance and function of adipose tissue through its effects on the gut microbiota. Furthermore, YGMCC2013 enhanced the thermogenic capacity of brown and beige adipocytes, and improved the structure and function of the gut microbiota. These improvements were reflected by an increase in short-chain fatty acids produced by beneficial bacteria in the intestine, and the activation of metabolic pathways related to energy and carbohydrate metabolism. Moreover, YGMCC2013 modulated the expression of il-27 and tgr5 signaling pathways in adipose tissue, which might be involved in regulating adipose tissue inflammation and energy expenditure, respectively. These findings collectively demonstrate that YGMCC2013 has potential as a probiotic candidate for preventing obesity and improving metabolic health by influencing the gut-adipose tissue axis.

Differentiation of acanthamoeba keratitis from other non-acanthamoeba keratitis: Risk factors and clinical features.

Infectious Keratitis is one of the most common ocular emergencies seen by ophthalmologists. Our aim is to identify the risk factors and clinical features of Acanthamoeba Keratitis (AK). This retrospective chart review study was conducted at King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia, and included all the microbial keratitis cases, male and female patients of all ages. The main outcome is the differentiation between various microbial keratitis types. We included 134 consecutive eyes of 126 persons. We had 24 cases of acanthamoeba keratitis, 22 bacterial keratitis, 24 fungal keratitis, 32 herpetic keratitis, and 32 bacterial co-infection. Contact lens wear was found in 33 eyes (24.6%). Among acanthamoeba keratitis patients, 73% were ≤ 39 years of age, and 73% were females (P <0.001). Also, in AK cases, epithelial defect was found in all cases (100%), endothelial plaques were found in 18 eyes (69.2%), 12 cases had radial keratoneuritis (46.2%), and ring infiltrate was found in 53.8% of AK cases. We determined the factors that increase the risk of acanthamoeba infection and the clinical characteristics that help distinguish it from other types of microbial keratitis. Our findings suggest that younger females and patients who wear contact lenses are more likely to develop acanthamoeba keratitis. The occurrence of epitheliopathy, ring infiltrate, radial keratoneuritis, and endothelial plaques indicate the possibility of acanthamoeba infection. Promoting education on wearing contact lenses is essential to reduce the risk of acanthamoeba infection, as it is the most significant risk factor for this infection.

The Tale of Staphylococcus aureus Isolated from Mastitis Infections: The Effect of Antimicrobials and Bacterial Relatedness

Staphylococcus aureus is a common causative agent of mastitis in dairy cattle, posing a substantial threat to animal health and resulting in significant economic losses. Preventive measures are usually in place to control the spread of the organism between animals and around the dairy environment; however, mastitis outbreaks can still be recurrent. During this investigation, a total of 30 S. aureus isolates were obtained from six deceased cows, all diagnosed with chronic mastitis during an outbreak in West Texas. The aim of this study was to evaluate the response of the S. aureus isolates causing severe mastitis infections to iodine treatments and their antibiotic susceptibility, planktonic growth, and biofilm formation. Udder skin was inoculated with S. aureus and subjected to various iodine concentrations of 0.25%, 0.38%, 0.50%, 0.75%, and 1.00%, with exposure times of 15 s, 10 s, and 60 s. The same concentrations were tested on S. aureus’s biofilm formation. The results of the antimicrobial susceptibility test indicate that the exposure time did not influence the treatment. Lower iodine concentrations were compared with 1.00%, as the standard treatment used by the dairy for teat disinfection, and statistical difference (p &lt; 0.001) was evident in the 0.00% iodine treatment compared to the other iodine concentrations. Moreover, a significant difference (p &lt; 0.001) emerged when comparing the 0.25% and 0.38% iodine concentrations with 1.00%. No difference (p &gt; 0.161) was detected between 0.50%, 0.75%, and 1.00%. These results suggest that, under the conditions investigated, iodine can be lowered to around 50% of the currently used dose without negatively impacting microbial control. On the other hand, S. aureus strains were susceptible to the tested antibiotics, demonstrating that antimicrobial resistance does not always play a role in the persistent mastitis infections caused by S. aureus. Further microbial phenotypic typing conducted on S. aureus strains indicated a possible common source of the infections, demonstrating the potential of there being resident S. aureus strains at this dairy farm.

Functional and Mechanistic Characterization of the 4,5-diepi-Isoishwarane Synthase from the Liverwort Radula lindenbergiana.

The microbial type sesquiterpene synthase RlMTPSL4 from the liverwort Radula lindenbergiana was investigated for its products, showing the formation of several sesquiterpene hydrocarbons. The main product was structurally characterized as the new compound 4,5-diepi-isoishwarane, while the side products included the known hydrocarbons germacrene A, α-selinene, eremophilene and 4,5-diepi-aristolochene. The cyclization mechanism towards 4,5-diepi-isoishwarane catalyzed by RlMTPSL4 was investigated through isotopic labeling experiments, revealing the stereochemical course for the deprotonation step to the neutral intermediate germacrene A, a reprotonation for its further cyclization, and a 1,2-hydride shift along the cascade. The absolute configuration of 4,5-diepi-isoishwarane was determined using a stereoselective deuteration approach, revealing an absolute configuration typically observed for a microbial type sesquiterpene.

MALDI-TOF MS: A Reliable Tool in the Real Life of the Clinical Microbiology Laboratory.

Matrix-Assisted Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) in the last decade has revealed itself as a valid support in the workflow in the clinical microbiology laboratory for the identification of bacteria and fungi, demonstrating high reliability and effectiveness in this application. Its use has reduced, by 24 h, the time to obtain a microbiological diagnosis compared to conventional biochemical automatic systems. MALDI-TOF MS application to the detection of pathogens directly in clinical samples was proposed but requires a deeper investigation, whereas its application to positive blood cultures for the identification of microorganisms and the detection of antimicrobial resistance are now the most useful applications. Thanks to its rapidity, accuracy, and low price in reagents and consumables, MALDI-TOF MS has also been applied to different fields of clinical microbiology, such as the detection of antibiotic susceptibility/resistance biomarkers, the identification of aminoacidic sequences and the chemical structure of protein terminal groups, and as an emerging method in microbial typing. Some of these applications are waiting for an extensive evaluation before confirming a transfer to the routine. MALDI-TOF MS has not yet been used for the routine identification of parasites; nevertheless, studies have been reported in the last few years on its use in the identification of intestinal protozoa, Plasmodium falciparum, or ectoparasites. Innovative applications of MALDI-TOF MS to viruses' identification were also reported, seeking further studies before adapting this tool to the virus's diagnostic. This mini-review is focused on the MALDI-TOF MS application in the real life of the diagnostic microbiology laboratory.

Stimulating microorganisms in the cultivation and improvement of vegetable plants

Research objective: In this study, the possibility of using different microbial types inoculated into the growing medium was evaluated in order to assess the growth-promoting potential of certain vegetable species. Materials and Methods: The plants were grown in pots under controlled conditions; 30 seedlings per thesis, divided into 3 replications of 10 plants each, were planted in early November 2023. The plants used in the trial were Cichorium intybus and Allium ampeloprasum. All plants were fertilised with a slow-release fertiliser (2 kg m-3 of Osmocote Pro® for 6 months) introduced into the growing medium at the time of transplanting. The six experimental groups in cultivation were: i) group without microorganisms, irrigated with water and previously fertilised substrate; ii) group with Pacilomyces lilacinus; iii) group with Azospirillum sp.; iv) group with Glomus sp.; v) group with Trichoderma viride; vi) group with mix Bacillus subtilis, Pseudomonas sp. and Trichoderma viride. On 11 January 2024, plant height, number of leaves, total leaf area per plant (mm2), primary root length (mm), biomass of the aerial and root system, and number of dead plants were recorded. Results and Discussion: The experiment showed that the use of microbial strains of various types can indeed significantly improve the vegetative and root growth of Cichorium intybus and Allium ampeloprasum. All treatments showed a significant improvement over the untreated control for the agronomic parameters analysed, but the Azospirillum sp. and Glomus sp. treatments were statistically the best. Improvements were also found in plant height, number of leaves, leaf area, vegetative and root biomass and root length. A very interesting aspect was also the ability of the microbial products to reduce plant mortality, particularly the application of Trichoderma viride in Cichorium intibus and all microbial treatments on Allium ampeloprasum. Conclusions: This experiment highlights other interesting and innovative aspects of the use of microorganisms, which have already been highlighted in previous trials on various vegetable and ornamental species. Given the importance of the application of microbial inoculums in plants, the new agricultural experiments are very important because they could enable the development of new products to be used in organic and sustainable farming systems and enable better results.

Galactosamine and mannosamine are integral parts of bacterial and fungal extracellular polymeric substances.

Extracellular polymeric substances (EPS) are produced by microorganisms and interact to form a complex matrix called biofilm. In soils, EPS are important contributors to the microbial necromass and, thus, to soil organic carbon (SOC). Amino sugars (AS) are used as indicators for microbial necromass in soil, although the origin of galactosamine and mannosamine is largely unknown. However, indications exist that they are part of EPS. In this study, two bacteria and two fungi were grown in starch medium either with or without a quartz matrix to induce EPS production. Each culture was separated in two fractions: one that directly underwent AS extraction (containing AS from both biomass and EPS), and another that first had EPS extracted, followed then by AS determination (exclusively containing AS from EPS). We did not observe a general effect of the quartz matrix neither of microbial type on AS production. The quantified amounts of galactosamine and mannosamine in the EPS fraction represented on average 100% of the total amounts of these two AS quantified in cell cultures, revealing they are integral parts of the biofilm. In contrast, muramic acid and glucosamine were also quantified in the EPS, but with much lower contribution rates to total AS production, of 18% and 33%, respectively, indicating they are not necessarily part of EPS. Our results allow a meaningful ecological interpretation of mannosamine and galactosamine data in the future as indicators of microbial EPS, and also attract interest of future studies to investigate the role of EPS to SOC and its dynamics.

Effects of Lotus Flower Extract on Cotton Fabric and Its Antimicrobial Activity against Wound Causing Pathogens

Abstract Background: Hemp that belongs to the cannabis plant has been used for medicinal purposes for centuries due to the purposes that contained natural plant products. Of all these types, lotus flower extract obtained from the Nelumbo nucifera has been considered to possess some antibacterial activity. This study seeks to evaluate the effectiveness of bacteriostatic activity of lotus flower extract incorporated into fabrics used in coating the dressing. Methods: Leaves of lotus were used and subjected to extraction using methanol and diethyl ether solvents. These extracts were then practiced in a Petri dish plate against the specific pathogens of wound infections obtained from Microbial Type Culture Collection (MTCC). According to the type of cell wall, the pathogens were divided into Gram-positive cocci: Staphylococcus aureus and Streptococcus pyogenes, and Gram-negative: Escherichia coli and Pseudomonas aeruginosa. The antimicrobial effectiveness was tested by means of the disc diffusion method. The phytochemical component was also screened as a way of determining the secondary metabolites present in the extracts. Results: Alkaloids, anthraquinone, flavone, saponin, glycoside, tannin, phenol and cardiac glycoside were present in the Phytochemical analysis of extracts of O.moschata. The antibacterial tests on bacterial species’ growth revealed that all the extracts were moderately effective against S. aureus, showing the zone of inhibition between 5 – 10 mm, whereas against P. aeruginosa and E. coli the extracts were highly effective with a zone of inhibition between 7 – 15 mm. Conclusion: In the case of this research, it is clearly depicted that lotus flower extracts have strong antibacterial properties especially against the Gram-negative bacteria namely P. aeruginosa and E. coli. These findings are in concordance with the ethno medial usage of lotus plant in treating infected wounds and opens up applications in using the extracts to develop antibacterial fabric scarf solutions. More related works should be conducted to investigate the clinical utility and effectiveness of the above extracts in wound healing and their safety.

Statistical optimization of process variables for anti-hypercholesterolemic metabolites production from Monascus purpureus MTCC 369 fermented finger millet

Monascus purpureus fermented rice has been used for centuries to treat hypercholesterolemia, indigestion, and diarrhea in East Asian countries. Monacolin K, also known as lovastatin, a secondary metabolite synthesized by Monascus sp. in fermentation, is mainly responsible for reducing the level of blood lipids. Besides statins, sterols produced in this process have also been reported to have hypolipidemic effects. In the current study, statin and total sterol production by M. purpureus microbial type culture collection and Gene Bank MTCC 369 on finger millet (FM) substrate were investigated. The central composite design of the response surface methodology (RSM) was used for the optimization of different fermentation process independent variables such as fermentation time period, temperature, inoculum volume, and pH for maximum production of statins and total sterols by M. purpureus MTCC 369. The maximum statin (9.78 mg/g) and sterol (0.46 mg/g) production was achieved at a temperature of 29.44°C, pH 5.0, inoculum size 5.37 ml, and fermentation time of 13.8 days. Fermentation process factors such as fermentation time period and temperature were significant positive factors, while pH and inoculum volume were found to be insignificant factors. The interactive effects of the positively influencing variables have been demonstrated. Compared with the traditional production of these metabolites, using FM as a substrate is promising for the high production of anti-hypercholesterolemic metabolites. The current study was aimed at optimization of the solid-state fermentation process of statin and total sterol using RSM for nutritional FM so as to improve M. purpureus-fermented FM (like red yeast rice) with health-promoting properties. This is the first report on the optimization of statin and sterols from M. purpureus MTCC 369 fermented FM with a significant yield that is on par with that reported so far.

Core gut microbes Cloacibacterium and Aeromonas associated with different gastropod species could be persistently transmitted across multiple generations

BackgroundStudies on the gut microbiota of animals have largely focused on vertebrates. The transmission modes of commensal intestinal bacteria in mammals have been well studied. However, in gastropods, the relationship between gut microbiota and hosts is still poorly understood. To gain a better understanding of the composition of gut microbes and their transmission routes in gastropods, a large-scale and long-term experiment on the dynamics and transmission modes of gut microbiota was conducted on freshwater snails.ResultsWe analyzed 244 microbial samples from the digestive tracts of freshwater gastropods and identified Proteobacteria and Bacteroidetes as dominant gut microbes. Aeromonas, Cloacibacterium, and Cetobacterium were identified as core microbes in the guts, accounting for over 50% of the total sequences. Furthermore, both core bacteria Aeromonas and Cloacibacterium, were shared among 7 gastropod species and played an important role in determining the gut microbial community types of both wild and cultured gastropods. Analysis of the gut microbiota at the population level, including wild gastropods and their offspring, indicated that a proportion of gut microbes could be consistently vertically transmitted inheritance, while the majority of the gut microbes resulted from horizontal transmission. Comparing cultured snails to their wild counterparts, we observed an increasing trend in the proportion of shared microbes and a decreasing trend in the number of unique microbes among wild gastropods and their offspring reared in a cultured environment. Core gut microbes, Aeromonas and Cloacibacterium, remained persistent and dispersed from wild snails to their offspring across multiple generations. Interestingly, under cultured environments, the gut microbiota in wild gastropods could only be maintained for up to 2 generations before converging with that of cultured snails. The difference observed in gut bacterial metabolism functions was associated with this transition. Our study also demonstrated that the gut microbial compositions in gastropods are influenced by developmental stages and revealed the presence of Aeromonas and Cloacibacterium throughout the life cycle in gastropods. Based on the dynamics of core gut microbes, it may be possible to predict the health status of gastropods during their adaptation to new environments. Additionally, gut microbial metabolic functions were found to be associated with the adaptive evolution of gastropods from wild to cultured environments.ConclusionsOur findings provide novel insights into the dynamic processes of gut microbiota colonization in gastropod mollusks and unveil the modes of microbial transmission within their guts.1dB18pPYxP-ygVgUJj2q9BVideo

Skin aging-related microbial types separated by Cutibacterium and α-diversity.

Studies on the skin microbiome have been conducted to uncover the relationship between skin microbes and the host. However, most of these studies have primarily focused on analyzing individual microbial compositions, which has resulted in a limited understanding of the overall relationship. We analyzed the facial skin characteristics and microbial profiles of 100 healthy Korean female volunteers using the V1-V2 region of the 16S ribosomal RNA gene. The two most prominent features of the facial skin microbiome, the proportion of Cutibacterium and α-diversity, were associated with most of the skin characteristics. Based on clustering results, we proposed four types of facial skin microbiome: type C for Cutibacterium, type B for balanced, type CB for those between typesC and B, and type O for others. Type C, which has a high proportion of Cutibacterium, showed high levels of pigmentation, wrinkles, pores, and sagging pores, indicating a tendency for severe skin aging. Type B, which has no dominant species and high microbial diversity, had lower values for pigmentation and wrinkles indicating less severe skin aging. Type CB was an intermediate type between type C and type B in terms of microbial composition and the level of skin aging. Type O dominated by microorganisms other than Cutibacterium, had high levels of sebum and pores but low levels of wrinkles. We proposed a criterion for classifying facial skin microbial types, each of which showed distinct facial skin aging features. Our simplified microbial types will contribute to a better understanding of facial skin microbial studies.

Different gut microbial types were found in captive striped hamsters.

Typing analysis has become a popular approach to categorize individual differences in studies of animal gut microbial communities. However, previous definitions of gut microbial types were more understood as a passive reaction process to different external interferences, as most studies involve diverse environmental variables. We wondered whether distinct gut microbial types can also occur in animals under the same external environment. Moreover, the role of host sex in shaping gut microbiota has been widely reported; thus, the current study preliminarily explores the effects of sex on potential different microbial types. Here, adult striped hamsters Cricetulus barabensis of different sexes were housed under the same controlled laboratory conditions, and their fecal samples were collected after two months to assess the gut microbiota by 16S rRNA sequencing. The gut microbiota of captive striped hamsters naturally separated into two types at the amplicon sequence variant (ASV) level. There was a significant difference in the Shannon index among these two types. A receiver operating characteristic (ROC) curve showed that the top 30 ASVs could effectively distinguish each type. Linear discriminant analysis of effect size (LEfSe) showed enrichment of the genera Lactobacillus, Treponema and Pygmaiobacter in one gut microbial type and enrichment of the genera Turicibacter and Ruminiclostridium in the other. The former type had higher carbohydrate metabolism ability, while the latter harbored a more complex co-occurrence network and higher amino acid metabolism ability. The gut microbial types were not associated with sex; however, we did find sex differences in the relative abundances of certain bacterial taxa, including some type-specific sex variations. Although captive animals live in a unified environment, their gut bacteria can still differentiate into distinct types, but the sex of the hosts may not play an important role in the typing process of small-scale captive animal communities. The relevant driving factors as well as other potential types need to be further investigated to better understand host-microbe interactions.

Effect of mechanical activation on biooxidation and gold extraction of a high-grade flotation concentrate using mesophilic and moderately thermophilic microorganisms

The effect of mechanical activation and biooxidation on the gold extraction from a high-grade (168 g/t) gold sulfide concentrate was investigated using a mixed culture of iron- and sulfur-oxidizing microorganisms. The influence of mechanical activation pretreatment, the nutrient medium type (Norris and 9K), initial pH, and microbial culture type was investigated on the biooxidation ability of mixed cultures of mesophilic and moderately thermophilic microorganisms. Results showed that gold extraction from the non-activated non-biooxidized concentrate was 83.9%, while after biooxidation, it reached 98.8%. The gold recovery from the mechanically activated non-biooxidized concentrate was 77.3%, which reached 97.6% after biooxidation. Therefore, biooxidation was found to have a significant positive effect on gold extraction, but mechanical activation had a negative effect on it in both abiotic and biotic media. The characterization of solid residues was performed by SEM/EDS and chemical analyses. Jarosite and gypsum were the main precipitates formed during biooxidation, especially in 9K nutrient medium. It was found that mechanical activation reduced the efficiency of biooxidation process mainly as a result of overcoming negative effects such as weak bacteria-mineral attachment, the release of toxic species, increasing pulp viscosity, and the coating of gold grains by less soluble solids on the positive effects such as the enhancing of surface area and the disordering of the crystal structure of refractory sulfide phases.

Characterization of Microbial Decay and Microbial Communities in Waterlogged Archaeological Rosewood (Dalbergia Species)

While numerous studies have examined microbial attacks on waterlogged archaeological wood, limited information is available regarding microbial attacks in waterlogged tropical hardwoods submerged in marine environments. In this context, we explored microbial attacks in waterlogged archaeological rosewood (Dalbergia species), a tropical hardwood species that was submerged in the Yellow Sea for approximately 700 years, using various microscopic techniques and next-generation sequencing (NGS) methods. Based on morphological features, Type-I soft rot decay was identified as the main decay type. Most fibers in waterlogged archaeological rosewood studied were gelatinous (G) fibers of tension wood and the mode of soft rot decay differed from fibers without the G-layer. Differences in decay resistance between vessel/axial parenchyma cells and fibers were not obvious. Vestured- and simple pit membranes showed higher decay resistance than vessel and axial parenchyma cell walls, respectively. Microbial community analysis by NGS revealed the dominance of Ascomycota and Basidiomycota in the fungal community. Various bacterial communities were also identified, although no prominent signs of bacterial decay were noted. The identified bacterial communities markedly differed from those reported previously in terms of their composition and abundance. Together, our results offer detailed insights into the microbial types and communities responsible for degrading waterlogged archaeological rosewood, contributing to a better understanding of microbial attacks in tropical hardwoods exposed to marine environments.

Evaluation of Fourier transform-infrared spectroscopy (FT-IR) as a control measure for nosocomial outbreak investigations.

Whole-genome sequencing (WGS) provides greater resolution than other molecular epidemiology strategies and is emerging as a new gold standard approach for microbial strain typing. The Bruker IR Biotyper is designed as a screening tool to identify bacterial isolates that require WGS to establish accurate relationships, but its performance and utility in nosocomial outbreak investigations have not been thoroughly investigated. Here, we evaluated the IR Biotyper by retrospectively examining isolates tested by WGS during investigations of potential nosocomial transmission events or outbreaks. Ninety-eight clinical isolates from 14 different outbreak investigations were examined: three collections of Acinetobacter baumannii (n = 2, n = 9, n = 5 isolates in each collection), one of Escherichia coli (n = 16), two of Pseudomonas aeruginosa (n = 2 and n = 5), two of Serratia marcescens (n = 9 and n = 7), five of Staphylococcus aureus (n = 8, n = 4, n = 3, n = 3, n = 17), and one of Stenotrophomonas maltophilia (n = 8). Linear regression demonstrated a weak, positive correlation between the number of pairwise genome-wide single-nucleotide polymorphisms (SNPs) and IR Biotyper spectral distance values for Gram-positive (r = 0.43, P ≤ 0.0001), Gram-negative (r = 0.1554, P = 0.0639), and all organisms combined (r = 0.342, P ≤ 0.0001). Overall, the IR Biotyper had a positive predictive value (PPV) of 55.81% for identifying strains that were closely related by genomic identity, but a negative predictive value (NPV) of 86.79% for identifying unrelated isolates. When experimentally adjusted cut-offs were applied to A. baumannii, P. aeruginosa, and E. coli, the PPV was 62% for identifying strains that were closely related and the NPV was 100% for identifying unrelated isolates. Implementation of the IR Biotyper as a screening tool in this cohort would have reduced the number of Gram-negative isolates requiring further WGS analysis by 50% and would reduce the number of S. aureus isolates needing WGS resolution by 48%.

Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria

Metabolic cross-feeding is a pervasive microbial interaction type that affects community stability and functioning and directs carbon and energy flows. The mechanisms that underlie these interactions and their association with metal/metalloid biogeochemistry, however, remain poorly understood. Here, we identified two soil bacteria, Bacillus sp. BP-3 and Delftia sp. DT-2, that engage in a two-tiered mutualism. Strain BP-3 has low utilization ability of pyruvic acid while strain DT-2 lacks hexokinase, lacks a phosphotransferase system, and is defective in glucose utilization. When strain BP-3 is grown in isolation with glucose, it releases pyruvic acid to the environment resulting in acidification and eventual self-killing. However, when strain BP-3 is grown together with strain DT-2, strain DT-2 utilizes the released pyruvic acid to meet its energy requirements, consequently rescuing strain BP-3 from pyruvic acid-induced growth inhibition. The two bacteria further enhance their collective competitiveness against other microbes by using arsenic as a weapon. Strain DT-2 reduces relatively non-toxic methylarsenate [MAs(V)] to highly toxic methylarsenite [MAs(III)], which kills or suppresses competitors, while strain BP-3 detoxifies MAs(III) by methylation to non-toxic dimethylarsenate [DMAs(V)]. These two arsenic transformations are enhanced when strains DT-2 and BP-3 are grown together. The two strains, along with their close relatives, widely co-occur in soils and their abundances increase with the soil arsenic concentration. Our results reveal that these bacterial types employ a two-tiered mutualism to ensure their collective metabolic activity and maintain their ecological competitive against other soil microbes. These findings shed light on the intricateness of bacterial interactions and their roles in ecosystem functioning.

Vaginal Ozone Insufflation in Management of Vaginal Candidiasis

The vagina of a woman is a sophisticated microecology system. Typically, the H2O2-producing Lactobacillus dominates the vaginal microbiota of healthy women. This bacterium converts glycogen in vaginal epithelial cells into lactic acid, sustaining the vagina's natural acidic environment. Understanding the substantial correlation between the vaginal and upper genital tract microbiota and vaginal and genital tract infections has led to an interest in these areas. However, the spectrum of microbial types consistent with a functioning genital tract and the variables influencing the flora remains perplexing. The most prevalent gynecological condition seen in primary care, vaginitis caused by Candida albicans, is a significant public health concern due to its high frequency. Candidal vulvovaginitis, also known as vaginal thrush and vaginal yeast infection, is an overgrowth of yeast in the vagina that irritates. Ozone treatment has made its way into German medical practice, where it is successfully applied to treat several disorders. Medical ozone's qualities, such as its bactericidal, virucidal, fungicidal, analgesic, and other effects, have been utilized in therapy, surgery, obstetrics and gynecology, dermatology, stomatology, and the treatment of infectious and venereal illnesses. During ozone treatment or therapy, a catheter was used to insufflate an ozone/oxygen gas mixture into the female reproductive system. They were completed continuously by attaching a catheter to the ozone output hose and allowing the ozone/oxygen gas mix to flow for the allotted time. Based on clinical and microbiological evidence, the effectiveness standards Complete clinical and microbiological recovery observable clinical symptoms that are objective. The vaginal mucous membrane was free of inflammatory disorders following treatment, and vaginal cultures were negative.

Biosynthesis of Bacterial Nanocellulose from Low-Cost Cellulosic Feedstocks: Effect of Microbial Producer.

Biodegradable bacterial nanocellulose (BNC) is a highly in-demand but expensive polymer, and the reduction of its production cost is an important task. The present study aimed to biosynthesize BNC on biologically high-quality hydrolyzate media prepared from miscanthus and oat hulls, and to explore the properties of the resultant BNC depending on the microbial producer used. In this study, three microbial producers were utilized for the biosynthesis of BNC: individual strains Komagataeibacter xylinus B-12429 and Komagataeibacter xylinus B-12431, and symbiotic Medusomyces gisevii Sa-12. The use of symbiotic Medusomyces gisevii Sa-12 was found to have technological benefits: nutrient media require no mineral salts or growth factors, and pasteurization is sufficient for the nutrient medium instead of sterilization. The yield of BNCs produced by the symbiotic culture turned out to be 44-65% higher than that for the individual strains. The physicochemical properties of BNC, such as nanofibril width, degree of polymerization, elastic modulus, Iα allomorph content and crystallinity index, are most notably dependent on the microbial producer type rather than the nutrient medium composition. This is the first study in which we investigated the biosynthesis of BNC on hydrolyzate media prepared from miscanthus and oat hulls under the same conditions but using different microbial producers, and showed that it is advisable to use the symbiotic culture. The choice of a microbial producer is grounded on the yield, production process simplification and properties. The BNC production from technical raw materials would cover considerable demands of BNC for technical purposes without competing with food resources.