Microbial Symbiosis Research Articles

Structure of plant-associated microeukaryotes in roots and leaves of aquatic and terrestrial plants revealed by blocking peptide-nucleic acid (PNA) amplification.

Studies of plant-microbe interactions, including mutualistic, antagonistic, parasitic, or commensal microbes, have greatly benefited our understanding of ecosystem functioning. New molecular identification tools have increasingly revealed the association patterns between microorganisms and plants. Here, we integrated long-read PacBio single-molecule sequencing technology with a blocking protein-nucleic acid (PNA) approach to minimise plant amplicons in a survey of plant-eukaryotic microbe relationships in roots and leaves of different aquatic and terrestrial plants to determine patterns of organ, host, and habitat preferences. The PNA approach reduced the samples' relative amounts of plant reads and did not distort the fungal and other microeukaryotic composition. Our analyses revealed that the eukaryotic microbiomes associated with leaves and roots of aquatic plants exhibit a much larger proportion of non-fungal microorganisms than terrestrial plants, and leaf and root microbiomes are similar. Terrestrial plants had much stronger differentiation of leaf and root microbiomes and stronger partner specificity than aquatic plants.

Effect of moss removal on soil multifunctionality during vegetation restoration in subtropical ecosystems

Mosses are multifunctional communities that are increasingly recognized as potential and sustainable resources to restore degraded ecosystems. However, available information is limited on the influence of mosses on soil multifunctionality during vegetation restoration in subtropical ecosystems. We investigated the effects of mosses on soil multifunctionality and four single functions in three vegetation restoration approaches (monoculture plantations, monoculture forage grasses and intercropping of trees and forage grasses) by conducting a moss removal and retention experiment. Moss removal decreased soil multifunctionality and the single functions of nutrient provisioning, water retention and plant–microbe symbiosis, particularly in monoculture plantations, in the 0–5 cm soil layer. Moss removal decreased the phospholipid fatty acid abundance of soil microbes (e.g., bacteria, Gram-negative bacteria and general fungi) in the 2–5 cm soil layer but had nonsignificant effects on the nematode community. Random forest analysis showed that moss properties were more important factors than the soil physicochemical, microbial and nematode properties linked to soil multifunctionality. Moss properties (diversity, thickness, biomass, carbon and nitrogen concentrations, carbon to nitrogen ratio, biological nitrogen fixation rate and saturated water absorption content) were positively associated with soil multifunctionality, nutrient provisioning, water retention and plant–microbe symbiosis. These findings highlight the importance of preserving mosses to maintain soil multifunctionality during vegetation restoration in degraded subtropical ecosystems, especially in monoculture plantations.

Shifts in the coral microbiome in response to in situ experimental deoxygenation.

Marine hypoxia is a threat for corals but has remained understudied in tropical regions where coral reefs are abundant. Though microbial symbioses can alleviate the effects of ecological stress, we do not yet understand the taxonomic or functional response of the coral microbiome to hypoxia. In this study, we experimentally lowered oxygen levels around Siderastrea siderea and Agaricia lamarcki colonies in situ to observe changes in the coral microbiome in response to deoxygenation. Our results show that hypoxia triggers a stochastic change of the microbiome overall, with some bacterial families changing deterministically after just 48 hours of exposure. These families represent an increase in anaerobic and opportunistic taxa in the microbiomes of both coral species. Thus, marine deoxygenation destabilizes the coral microbiome and increases bacterial opportunism. This work provides novel and fundamental knowledge of the microbial response in coral during hypoxia and may provide insight into holobiont function during stress.

Interactions with microbial consortia have variable effects in organic carbon and production of exometabolites among genotypes of Populus trichocarpa.

Poplar is a short-rotation woody crop frequently studied for its significance as a sustainable bioenergy source. The successful establishment of a poplar plantation partially depends on its rhizosphere-a dynamic zone governed by complex interactions between plant roots and a plethora of commensal, mutualistic, symbiotic, or pathogenic microbes that shape plant fitness. In an exploratory endeavor, we investigated the effects of a consortium consisting of ectomycorrhizal fungi and a beneficial Pseudomonas sp. strain GM41 on plant growth (including height, stem girth, leaf, and root growth) and as well as growth rate over time, across four Populus trichocarpa genotypes. Additionally, we compared the level of total organic carbon and plant exometabolite profiles across different poplar genotypes in the presence of the microbial consortium. These data revealed no significant difference in plant growth parameters between the treatments and the control across four different poplar genotypes at 7 weeks post-inoculation. However, total organic carbon and exometabolite profiles were significantly different between the genotypes and the treatments. These findings suggest that this microbial consortium has the potential to trigger early signaling responses in poplar, influencing its metabolism in ways crucial for later developmental processes and stress tolerance.

Influence of social lifestyles on host-microbe symbioses in the bees.

Microbiomes are increasingly recognised as critical for the health of an organism. In eusocial insect societies, frequent social interactions allow for high-fidelity transmission of microbes across generations, leading to closer host-microbe coevolution. The microbial communities of bees with other social lifestyles are less studied, and few comparisons have been made between taxa that vary in social structure. To address this gap, we leveraged a cloud-computing resource and publicly available transcriptomic data to conduct a survey of microbial diversity in bee samples from a variety of social lifestyles and taxa. We consistently recover the core microbes of well-studied corbiculate bees, supporting this method's ability to accurately characterise microbial communities. We find that the bacterial communities of bees are influenced by host location, phylogeny and social lifestyle, although no clear effect was found for fungal or viral microbial communities. Bee genera with more complex societies tend to harbour more diverse microbes, with Wolbachia detected more commonly in solitary tribes. We present a description of the microbiota of Euglossine bees and find that they do not share the "corbiculate core" microbiome. Notably, we find that bacteria with known anti-pathogenic properties are present across social bee genera, suggesting that symbioses that enhance host immunity are important with higher sociality. Our approach provides an inexpensive means of exploring microbiomes of a given taxa and identifying avenues for further research. These findings contribute to our understanding of the relationships between bees and their associated microbial communities, highlighting the importance of considering microbiome dynamics in investigations of bee health.

Diversity of Bacteria Associated with Guts and Gonads in Three Spider Species and Potential Transmission Pathways of Microbes within the Same Spider Host.

Microbial symbiosis plays a crucial role in the ecological and evolutionary processes of animals. It is well known that spiders, with their unique and diverse predatory adaptations, assume an indispensable role in maintaining ecological balance and the food chain. However, our current understanding of spider microbiomes remains relatively limited. The gut microbiota and gonad microbiota of spiders can both potentially influence their physiology, ecology, and behavior, including aspects such as digestion, immunity, reproductive health, and reproductive behavior. In the current study, based on high-throughput sequencing of the 16S rRNA V3 and V4 regions, we detected the gut and gonad microbiota communities of three spider species captured from the same habitat, namely, Eriovixia cavaleriei, Larinioides cornutus, and Pardosa pseudoannulata. In these three species, we observed that, at the phylum level classification, the gut and gonad of E. cavaleriei are primarily composed of Proteobacteria, while those of L. cornutus and P. pseudoannulata are primarily composed of Firmicutes. At the genus level of classification, we identified 372 and 360 genera from the gut and gonad bacterial communities. It is noteworthy that the gut and gonad bacterial flora of E. cavaleriei and L. cornutus were dominated by Wolbachia and Spiroplasma. Results show that there were no differences in microbial communities between females and males of the same spider species. Furthermore, there is similarity between the gut and ovary microbial communities of female spiders, implying a potential avenue for microbial transmission between the gut and gonad within female spiders. By comprehensively studying these two microbial communities, we can establish the theoretical foundation for exploring the relationship between gut and gonad microbiota and their host, as well as the mechanisms through which microbes exert their effects.

Regulation and remodeling of microbial symbiosis in insect metamorphosis

Many insects are dependent on microbial mutualists, which are often harbored in specialized symbiotic organs. Upon metamorphosis, insect organs are drastically reorganized. What mechanism regulates the remodeling of the symbiotic organ upon metamorphosis? How does it affect the microbial symbiont therein? Here, we addressed these fundamental issues of symbiosis by experimentally manipulating insect metamorphosis. The stinkbug Plautia stali possesses a midgut symbiotic organ wherein an essential bacterial symbiont resides. By RNAi of master regulator genes for metamorphosis, Kr-h1 over nymphal traits and E93 over adult traits, we generated precocious adults and supernumerary nymphs of P. stali, thereby disentangling the effects of metamorphosis, growth level, developmental stage, and other factors on the symbiotic system. Upon metamorphosis, the symbiotic organ of P. stali was transformed from nymph type to adult type. The supernumerary nymphs and the precocious adults, respectively, developed nymph-type and adult-type symbiotic organs not only morphologically but also transcriptomically, uncovering that metamorphic remodeling of the symbiotic organ is under the control of the MEKRE93 pathway. Transcriptomic, cytological, and biochemical analyses unveiled that the structural and transcriptomic remodeling of the symbiotic organ toward adult emergence underpins its functional extension to food digestion in addition to the original role of symbiont retention for essential nutrient production. Notably, we found that the symbiotic bacteria in the adult-type symbiotic organ up-regulated genes for production of sulfur-containing essential amino acids, methionine and cysteine, that are rich in eggs and sperm, uncovering adult-specific symbiont functioning for host reproduction and highlighting intricate host-symbiont interactions associated with insect metamorphosis.

Optimising organic composition of feedstock to improve microbial dynamics and symbiosis to advance solid-state anaerobic co-digestion of sewage sludge and organic waste

This study provided new insight to the underlying mechanisms, by which organic compositions, including protein, fat, degradable carbohydrates and lignocellulose, regulate the performance of solid-state anaerobic digestion (SSAD) for synergistic treatment of organic wastes. Results show that the feedstock with a balanced composition of protein, fat, degradable carbohydrates and lignocellulose could maintain SSAD homeostasis to enhance methane (CH4) production by 14–487%. On the other hand, organic waste with a high content of degradable carbohydrates and fat at 39 and 14%, respectively, showed an initially high CH4 production at the beginning but a lower overall CH4 production. This was because of the accumulation of volatile fatty acids (VFAs) and ammonium nitrogen (NH4+-N) at up to 17.3 and 7227.7 mg·L−1, respectively, leading to anaerobic activity inhibition. Microbial dynamic and modular network analyses indicated that the balanced feedstock secured stepwise biodegradation of different organic substances to reduce the relative abundance of hydrolytic bacteria (e.g. Rikenellaceae_RC9_gut_group and Tepidimicrobium), thus alleviating VFAs and NH4+-N stresses. In particular, fat in the balanced feedstock could not only enrich the phylum Firmicutes for macromolecular biodegradation and genes for VFAs production, but also inhibit relative oxidizers (e.g. Synergistes and Acinetobacter) to facilitate propionate and acetate production to strengthen acetotrophic methanogenesis for effective CH4 yield. Results in this study show that a balanced organic composition could regulate microbial dynamics and symbiosis to advance SSAD homeostasis and methanation in synergistic organic waste treatment.

Red clover productivity under drought: Are soil microbes a burden or a treasure?

Drought-induced changes in plant traits are well-studied, e.g. building smaller and thicker leaves, reducing stomatal density or increasing root uptake. However, the extent to which these changes depend on plant-soil interactions remains unclear. Mutualistic soil microbes like arbuscular mycorrhizal fungi (AMF) and Rhizobium are known to enhance plant productivity, water and nutrient uptake and stress tolerance. Therefore, alterations in soil microbial loads are expected to affect not only plant productivity but also plant responses to drought through changing plant traits. In this study, we investigated the effects of plant-soil interactions on the productivity and traits of red clover (Trifolium pratense L.) under repeated drought. We conducted a pot experiment with two treatments: water treatment (wet versus drought) and microbial reduction by soil steam sterilization (native versus sterilized soil). We found that plants in native soil showed lower productivity and plant traits associated with slow-growing strategies (i.e. small and coarse leaves, lower stomatal density and higher root mass). However, the reduction of soil microbial load by soil steam sterilization increased plant productivity under wet conditions and led to plant traits associated with fast-growing strategies. Drought in sterilized soil decreased productivity, promoted earlier wilting and resulted in the development of plant traits associated with a more slow-growing strategy. Furthermore, roots became longer and thinner and rhizobial nodulation decreased, demonstrating the reduction of mutualists. Hence, our results show that soil microbes trigger plant traits, which suggests that they play an important role in plant responses to drought, in maintaining plant productivity and in prolonging plant vitality.

Supporting urban greenspace with microbial symbiosis

Societal Impact StatementCities are stressful environments for plants, plagued by heat, pollution, and biodiversity loss. As a result, plant communities tend to suffer in green roofs, parks, and living walls. Finding solutions to help plants grow in stressful environments is a goal of the sustainable city. One solution is to better incorporate plant–microbe symbiosis in green architecture. Symbiotic fungi and bacteria can provide nutrients, water, and help plants to cope with urban stress. The reconceptualization of green infrastructure from a microbial‐focused perspective has the potential to improve plant health, growth, and diversity in cities.SummaryPlant communities in cities help maintain the health and stability of urban ecosystems and inhabitants. Ensuring that greenspace is healthy and productive is a key goal of green infrastructure and landscape architecture (GILA). However, cities are stressful environments for plants. In natural ecosystems, plants live in symbiosis with fungi, bacteria, and other microbes that can help alleviate stress. Microbial communities may also help with stress associated with urban environments. Incorporating mutualistic symbioses into GILA is a sustainable way to enhance urban greenspace. Here, we address key stressors for GILA in cities, including dependency on fertilizers, pathogens, drought, fewer pollinators, pollution, and reduced plant biodiversity. For each of these stressors, we discuss how symbiotic fungi and bacteria can help mitigate these issues, including case‐use scenarios. We conclude with new approaches to deliberately incorporate mutualisms in cities and open dialogues with stakeholders.

Characterization of bacterial swarming motility: a review

Swarming motility is a typical synergistic motion, in which bacteria use flagella and Type Ⅳ Pili together to move collectively on semi-solid surfaces. Swarming motility is a hot topic of research in the field of microbiology because of its close relationship with biofilm formation, fruiting bodies formation, pathogen invasion and microbial dispersal and symbiosis. A large number of studies have been conducted on bacterial swarming motility, including changes in the expression of key proteins, changes in chemical communications between bacteria as well as mechanical changes. The expression of flagellin and the level of intracellular c-di-GMP complicatedly regulates the collective behavior of bacteria in colonies, which consequently impacts the swarming motility. The unique physical properties of swarmer cells are conducive to the expansion of the whole colony. Factors such as nutrient and water content in the surrounding growth environment of bacteria also affect the ability of bacteria to swarm to different degrees. It is challenging to construct a universal model of swarming motility based on the molecular mechanisms of swarming in the future.

Microbial management as a driver of parental care and family aggregations in carrion feeding insects

Social behaviors and lifestyles have evolved as successful strategies to cope with adverse and challenging living conditions, often by manipulating the immediate environment. These manipulations can extend to the surrounding microbiome, both in terms of combating harmful agents such as pathogens but also by facilitating the growth of beneficial microbes. In contrast to the largely antagonistic role traditionally assigned to microbes in social systems, these host–microbe interactions are receiving increasing attention as potential facilitators of social evolution. Here, we explore this perspective using Nicrophorus burying beetles, a group of insect carrion breeders which offer insights into the evolutionary interactions between sociality and microbial mutualists in a relatively simple family model. Recent studies have demonstrated the constant microbial challenges faced by Nicrophorus nurseries and the costly consequences they entail. Here, we provide an overview of these challenges and then explore the role of microbial mutualists in this social endeavor, focusing on the advantages they confer in terms of development and immunity. Additionally, we discuss how these mutualistic associations may select for committed parental care and more obligate forms of social life by promoting prolonged social associations through vertical transmission. Our review highlights the hypothesis that microbial mutualists not only provide immediate benefits but may also encourage social interactions in their hosts. However, the occurrence, degree, and underlying mechanisms of this phenomenon remain largely theoretical, as do the evolutionary feedbacks on microbes. Empirical evidence in this area is currently limited, emphasizing the need for further research. Nicrophorus burying beetles represent an ideal system to investigate the interplay between microbial mutualists and social evolution, offering a promising avenue for future studies. Overall, this review underscores the importance of understanding the complex interactions between microbial mutualists and social behaviors in challenging environments, and beyond.

Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation.

The intra-host composition of horizontally transmitted microbial symbionts can vary across host populations due to interactive effects of host genetics, environmental, and geographic factors. While adaptation to local habitat conditions can drive geographic subdivision of symbiont strains, it is unknown how differences in ecological characteristics among host-symbiont associations influence the genomic structure of symbiont populations. To address this question, we sequenced metagenomes of different populations of the deep-sea mussel Bathymodiolus septemdierum, which are common at Western Pacific deep-sea hydrothermal vents and show characteristic patterns of niche partitioning with sympatric gastropod symbioses. Bathymodiolus septemdierum lives in close symbiotic relationship with sulfur-oxidizing chemosynthetic bacteria but supplements its symbiotrophic diet through filter-feeding, enabling it to occupy ecological niches with little exposure to geochemical reductants. Our analyses indicate that symbiont populations associated with B. septemdierum show structuring by geographic location, but that the dominant symbiont strain is uncorrelated with vent site. These patterns are in contrast to co-occurring Alviniconcha and Ifremeria gastropod symbioses that exhibit greater symbiont nutritional dependence and occupy habitats with higher spatial variability in environmental conditions. Our results suggest that relative habitat homogeneity combined with sufficient symbiont dispersal and genomic mixing might promote persistence of similar symbiont strains across geographic locations, while mixotrophy might decrease selective pressures on the host to affiliate with locally adapted symbiont strains. Overall, these data contribute to our understanding of the potential mechanisms influencing symbiont population structure across a spectrum of marine microbial symbioses that occupy contrasting ecological niches. IMPORTANCE Beneficial relationships between animals and microbial organisms (symbionts) are ubiquitous in nature. In the ocean, microbial symbionts are typically acquired from the environment and their composition across geographic locations is often shaped by adaptation to local habitat conditions. However, it is currently unknown how generalizable these patterns are across symbiotic systems that have contrasting ecological characteristics. To address this question, we compared symbiont population structure between deep-sea hydrothermal vent mussels and co-occurring but ecologically distinct snail species. Our analyses show that mussel symbiont populations are less partitioned by geography and do not demonstrate evidence for environmental adaptation. We posit that the mussel's mixotrophic feeding mode may lower its need to affiliate with locally adapted symbiont strains, while microhabitat stability and symbiont genomic mixing likely favors persistence of symbiont strains across geographic locations. Altogether, these findings further our understanding of the mechanisms shaping symbiont population structure in marine environmentally transmitted symbioses.

Niche-Specific Restructuring of Bacterial Communities Associated with Submerged Macrophyte under Ammonium Stress.

Submerged macrophytes and their epiphytic microbes form a "holobiont" that plays crucial roles in regulating the biogeochemical cycles of aquatic ecosystems but is sensitive to environmental disturbances such as ammonium loadings. Increasingly more studies suggest that plants may actively seek help from surrounding microbial communities whereby conferring benefits in responding to particular abiotic stresses. However, empirical evidence is scarce regarding how aquatic plants reconstruct their microbiomes as a "cry-for-help" against acute ammonium stress. Here, we investigated the temporal dynamics of the phyllosphere and rhizosphere bacterial communities of Vallisneria natans following ammonium stress and recovery periods. The bacterial community diversity of different plant niches exhibited opposite patterns with ammonium stress, that is, decreasing in the phyllosphere while increasing in the rhizosphere. Furthermore, both phyllosphere and rhizosphere bacterial communities underwent large compositional changes at the end of ammonium stress, significantly enriching of several nitrifiers and denitrifiers. Meanwhile, bacterial legacies wrought by ammonium stress were detected for weeks; some plant growth-promoting and stress-relieving bacteria remained enriched even after stress disappeared. Structural equation model analysis showed that the reshaped bacterial communities in plant niches collectively had a positive effect on maintaining plant biomass. Additionally, we applied an age-prediction model to predict the bacterial community's successional trajectory, and the results revealed a persistent change in bacterial community development under ammonium treatment. Our findings highlight the importance of plant-microbe interactions in mitigating plant stress and fostering a better understanding of the assembly of plant-beneficial microbes under ammonium stress in aquatic ecosystems. IMPORTANCE Increasing anthropogenic input of ammonium is accelerating the decline of submerged macrophytes in aquatic ecosystems. Finding efficient ways to release submerged macrophytes from ammonium stress is crucial to maintain their ecological benefits. Microbial symbioses can alleviate abiotic stress in plants, but harnessing these beneficial interactions requires a detailed understanding of plant microbiome responses to ammonium stress, especially over a continuous time course. Here, we tracked the temporal changes in bacterial communities associated with the phyllosphere and rhizosphere of Vallisneria natans during ammonium stress and recovery periods. Our results showed that severe ammonium stress triggers a plant-driven timely reshaping of the associated bacterial community in a niche-specific strategy. The reassembled bacterial communities could potentially benefit the plant by positively contributing to nitrogen transformation and plant growth promotion. These findings provide empirical evidence regarding the adaptive strategy of aquatic plants whereby they recruit beneficial microbes against ammonium stress.

Algal symbionts of the freshwater sponge Ephydatia muelleri

The freshwater sponge, Ephydatia muelleri, is an emerging model system for studying animal:microbe symbioses. Intracellular green microalgae are one of the more common symbionts that live in a facultative mutualism with E. muelleri. While these symbioses have long been known, the identity of the algal symbionts in E. muelleri cells has not been studied in detail. Here, we isolate and characterize endosymbiotic algae from E. muelleri collected from different geographic locations. We find that the algae can be transmitted through asexually produced gemmules and importantly that they can form symbioses with different, differentiated sponge cell types in the adult sponge. Our findings indicate that at least two algal lineages form endosymbioses with E. muelleri. One of the lineages includes species commonly found in samples from two locations in Canada and one in the United States (clade 1: closely related to Auxenochlorella pyrenoidosa). The other clade includes algae found in sponges from one site in Maine, USA, and Lewiniosphaera symbiontica, which is a strain isolated in 1956 from the freshwater sponge Spongilla. We compared microbiomes found in cultures of microalgae as well as the original sponge hosts, and found that very similar bacterial microbiomes associate with both clades (91 orders of Bacteria are shared among the samples we compared). The microbiomes found in the cultures resemble, with a high degree of overlap, the microbiome associated with the sponge host.

Population Dynamics of Intestinal Enterococcus Modulate Galleria mellonella Metamorphosis.

Microbes found in the digestive tracts of insects are known to play an important role in their host's behavior. Although Lepidoptera is one of the most varied insect orders, the link between microbial symbiosis and host development is still poorly understood. In particular, little is known about the role of gut bacteria in metamorphosis. Here, we explored gut microbial biodiversity throughout the life cycle of Galleria mellonella, using amplicon pyrosequencing with the V1 to V3 regions, and found that Enterococcus spp. were abundant in larvae, while Enterobacter spp. were predominant in pupae. Interestingly, eradication of Enterococcus spp. from the digestive system accelerated the larval-to-pupal transition. Furthermore, host transcriptome analysis demonstrated that immune response genes were upregulated in pupae, whereas hormone genes were upregulated in larvae. In particular, regulation of antimicrobial peptide production in the host gut correlated with developmental stage. Certain antimicrobial peptides inhibited the growth of Enterococcus innesii, a dominant bacterial species in the gut of G. mellonella larvae. Our study highlights the importance of gut microbiota dynamics on metamorphosis as a consequence of the active secretion of antimicrobial peptides in the G. mellonella gut. IMPORTANCE First, we demonstrated that the presence of Enterococcus spp. is a driving force for insect metamorphosis. RNA sequencing and peptide production subsequently revealed that antimicrobial peptides targeted against microorganisms in the gut of Galleria mellonella (wax moth) did not kill Enterobacteria species, but did kill Enterococcus species, when the moth was at a certain stage of growth, and this promoted moth pupation.

Contrasting mycorrhizal growth responses in native and invasive woody species are associated with distinct root trait syndromes

Abstract Invasive plant species often express resource‐acquisitive leaf traits that support rapid growth, but associated fine root traits and the role of microbial mutualists in invader whole‐plant functioning remain poorly understood. We performed an experiment of 12 phylogenetically grouped native and non‐native, invasive woody species, grown with or without a common inoculum of arbuscular mycorrhizal fungi (AMF) across two nutrient levels. We measured 10 fine root traits associated with nutrient uptake and suitability of AMF colonization. The presence of AMF increased the growth rate of all species, but native species were significantly more dependent on AMF than invaders. Furthermore, invaders expressed a distinct syndrome of first‐order root traits, including longer, thinner roots of high specific root length, greater branching intensity and lower tissue density, which are traits associated with rapid nutrient uptake and low AMF association. This syndrome was independent of phylogeny, AMF inoculation and soil fertility. An acquisitive fine root trait syndrome for invaders supports high photosynthetic and growth rates, linking above‐ and below‐ground functioning. The occurrence of this syndrome across phylogenetic groups indicates that lineages of woody invaders typically associated with arbuscular mycorrhizas may be generally less dependent on AMF than native species. Read the free Plain Language Summary for this article on the Journal blog.

Tripartite interactions comprising yeast-endobacteria systems in the gut of vector mosquitoes.

It is shown that bacteria use yeast as a niche for survival in stressful conditions, therefore yeasts may act as temporary or permanent bacterial reservoirs. Endobacteria colonise the fungal vacuole of various osmotolerant yeasts which survive and multiply in sugar-rich sources such as plant nectars. Nectar-associated yeasts are present even in the digestive system of insects and often establish mutualistic symbioses with both hosts. Research on insect microbial symbioses is increasing but bacterial-fungal interactions are yet unexplored. Here, we have focused on the endobacteria of Wickerhamomyces anomalus (formerly Pichia anomala and Candida pelliculosa), an osmotolerant yeast associated with sugar sources and the insect gut. Symbiotic strains of W. anomalus influence larval development and contribute digestive processes in adults, in addition to exerting wide antimicrobial properties for host defence in diverse insects including mosquitoes. Antiplasmodial effects of W. anomalus have been shown in the gut of the female malaria vector mosquito Anopheles stephensi. This discovery highlights the potential of utilizing yeast as a promising tool for symbiotic control of mosquito-borne diseases. In the present study, we have carried out a large Next Generation Sequencing (NGS) metagenomics analysis including W. anomalus strains associated with vector mosquitoes Anopheles, Aedes and Culex, which has highlighted wide and heterogeneous EB communities in yeast. Furthermore, we have disclosed a Matryoshka-like association in the gut of A stephensi that comprises different EB in the strain of W. anomalus WaF17.12. Our investigations started with the localization of fast-moving bacteria-like bodies within the yeast vacuole of WaF17.12. Additional microscopy analyses have validated the presence of alive intravacuolar bacteria and 16S rDNA libraries from WaF17.12 have identified a few bacterial targets. Some of these EB have been isolated and tested for lytic properties and capability to re-infect the yeast cell. Moreover, a selective competence to enter yeast cell has been shown comparing different bacteria. We suggested possible tripartite interactions among EB, W. anomalus and the host, opening new knowledge on the vector biology.

Mycorrhizal inoculation under water stress conditions and its influence on the benefit of host microbe symbiosis of Terminalia arjuna species

BackgroundEntisol is a very poor, compact, and low-water-holding capacity soil. They are obstacles to the plant's root system's penetration and the availability of water, particularly in dry months. However, Arbuscular mycorrhizae fungi (AMF) is used for seedling growth and reduces water stress in the plant.ResultsIn this experiment, the growth parameters and the physiological activities of the plant were changed for the well watering (WW), fractionated watering (FW), and stopped/no watering conditions of the T. arjunaseedling. This experiment demonstrated higher mycorrhizal dependency (24.90%) under the FW condition than that of the WW condition (18.58%). Also the root colonization was higher (67%) under FW plants compared to WW plants (53%) associated with AMF+ in T. arjuna seedling. Photosynthesis was found 24.27% more with FW than the WW condition. Experiment' shows posivitivecorrelation between the photosynthesis and interval of no watering for AMF− plants (r2 = 0.873 for AMF− (control) and comparatively very weak for plants with AMF+ (r2 = 0.259 for AMF+ plants).ConclusionsThe findings confirms the use of AMF in entisol soil to improve plant growth and biomass by reducing edaphic stress.

Fragment size and diversity of mulches affect their decomposition, nutrient dynamics, and mycorrhizal root colonisation

Plant-based mulch has been proposed as a sustainable way of maintaining soil fertility. However, the role of mulch diversity, quality, and size in decomposition dynamics, and their effect on crop yield, has not been fully explored. We investigated how mulch quality, proxied by the constituent plant species diversity, and residue size drive mulch decomposition, nutrient release, crop nutrition, and yield. A rhizotron experiment was set up with barley as a model crop, with the addition of mulch of two particle sizes (1.5 and 30 cm) and four different plant residue mixes of differing biodiversity (17, 12, 6, and 1 species) in a fully factorial design. Soil nutrient dynamics were measured at advanced decomposition stages, together with residue quality, arbuscular mycorrhizal fungal (AMF) root colonisation, and crop yield. Residue mass loss was significantly affected by its chemical composition. Initial NDF content was more restricted factor in C and N mineralisation than C:N or lignin. Long residues retained significantly higher C and N content, than short residues. Crop yield was not affected by residue type or size. Residue size significantly affected barley growth rate, influencing seed protein content. Soil available K was significantly increased by residues with a higher initial C:N ratio. Short residues resulted in higher soil Zn. Residues of higher diversity resulted inhigher AMF root colonisationof the barley plants. Generally, long residue mulches maintain higher fertilisation capacity at advanced stage of decomposition than short ones, without a deleterious effect on crop yield. Further investigation should evaluate the effect of continuous application of long residue mulches on soil fertility and microbial symbiosis.