Soil Microbial Function Research Articles

Effect of termite mounds on soil microbial communities and microbial processes: Implications for soil carbon and nitrogen cycling

Fungus-feeding termites are considered to be ecosystem engineers because of their ability to construct massive and complex mounds with different soil physicochemical and biological properties in tropical ecosystems. However, the impact of the termite nesting process on soil microbial communities and microbial functions related to nutrient cycling is poorly understood. In this study, we investigated termite-induced changes in soil microbial communities and their nutrient cycling functions within termite mounds (i.e. live mounds and abandoned mounds) in the humid tropical region of Southwest China. We found that the live mounds harbour intermediate microbial community richness (i.e. PLFAs, fungi, bacteria, G+, and G- bacteria) between surrounding topsoils and deep soils, with the ratio of fungi to bacteria (F:B) in mounds being significantly higher than in surrounding soils. However, the microbial communities gradually transformed to resemble the surrounding soils after the mounds were abandoned because of natural weathering and plant invasion. A relatively more uniform distribution of microbial communities was found within live mounds than in abandoned mounds and surrounding soils, suggesting that termites shaped the environment within the mounds, leading to the homogenisation of microbial communities. In addition, the termite-induced changes of soil physicochemical properties (e.g. water content, pH, organic matter, total N and P) were closely linked to microbial communities. We also observed a reduction in microbial processes associated with nutrient cycling, including microbial respiration, and extracellular enzymatic activities, in mounds relative to the surrounding topsoils. These findings have important implications for exploring microbial communities within termite mounds, which is critical to understand the potential role of termites in regulating soil carbon and nitrogen cycling in tropical ecosystems.

Soil variables driven by host plant and growth season affect soil microbial composition and metabolism in extremely arid desert ecosystems

Assessment changes of soil microbial community structure and function is important in understanding the response to desert ecosystem management. In present study, variations of soil microbial community and edaphic factors associated with five desert shrubs were determined in Anxi extremely arid desert in Northwest China in growing (summer), deciduous (autumn), and snowfall (winter) seasons. For that, the microbial composition and catabolic metabolism were examined using methods of phospholipid fatty acid (PLFA) and Biolog EcoPlate, respectively. Regardless of plant species and seasonal patterns, the microbial community was mostly dominated by gram-negative bacteria (GN); and the carbohydrates, amino acids and polymers were the main carbon sources for desert microbial metabolism. Microbial biomass and metabolic levels were significantly higher in both summer and winter than those of autumn. There was no correlation between soil microbial community and carbon utilization in winter; but GN was positively correlated with metabolism of amines carbon sources in summer, while fungal community presented the strongest correlation with suites of carbon sources’ metabolic levels in autumn, indicating the uncoupled relationship between microbial community and function in desert ecosystems. Desert shrubs significantly influenced the composition of soil microbial community, whereas the variation of microbial catabolic metabolism was most attributed to seasonality. Nevertheless, the effects of both plant species (21.3 %) and climate variation (84.9 %) interacted with soil properties, indicating the seasonality of soil nutrients predominately determined the changes in composition and metabolism of desert microbes. Both the comprehensive seasonal level and the intra-seasonal paired correlation analysis proved that phosphorus was the key factor in determining microbial community composition, while ammonia and nitrate nitrogen were more correlated to microbial functional metabolism. Additionally, soil moisture and organic carbon in desert environment also induced the shifts in ratio of fungi and bacterial communities. We conclude that the seasonal patterns of soil microbial community and metabolic function in extremely arid desert are predictable, and mainly influenced by specific soil factors driven by desert shrubs and climate factors. These findings will provide a basis for evaluating the management of soil resources and microbial function in desert environments.

Effect of phenol formaldehyde-associated microplastics on soil microbial community, assembly, and functioning.

Increasing investigations explore the effects of plastic pollutants on bacterial communities, diversity, and functioning in various ecosystems. However, the impact of microplastics (MPs) on the eukaryotic community, microbial assemblages, and interactions is still limited. Here, we investigated bacterial and micro-eukaryotic communities and functioning in soils with different concentrations of phenol formaldehyde-associated MPs (PF-MPs), and revealed the factors, such as soil properties, microbial community assembly, and interactions between microbes, influencing them. Our results showed that a high concentration (1%) of PF-MPs decreased the microbial interactions and the contribution of deterministic processes to the community assembly of microbes, and consequently changed the communities of bacteria, but not eukaryotes. A significant and negative relationship was determined between N2O emission rate and functional genes related to nitrification, indicating that the competitive interactions between functional microbes would affect the nitrogen cycling of soil ecosystem. We further found that vegetable biomass weakly decreased in treatments with a higher concentration of PF-MPs and positively related to the diversity of micro-eukaryotic communities and functional diversity of bacterial communities. These results suggest that a high concentration of the PF-MPs would influence crop growth by changing microbial communities, interactions, and eukaryotic and functional diversity. Our findings provide important evidence for agriculture management of phenol formaldehyde and suggest that we must consider their threats to microbial community compositions, diversity, and assemblage in soils due to the accumulation of PF-MPs widely used in the field.

Preliminary assessment of arbuscular mycorhizal inoculation in teak and napier grass agroforestry practice treated with soil amendments

Soil amendments are known to improve soil structure, increase moisture content, improve fertility and facilitate soil microbial functions. The objective of this study was to determine the effects of gypsum on colonization of arbuscular mycorrhizas in teak plantations planted as fences for napier grass. Teak seedlings were planted in October 2019 and divided into 4 blocks, A, B, C and D comprising 32 seedlings. Plots of A and C were treated with treatments of 3 kg of gypsum and 3 kg of compost (1:1), whereas B and D were control plots. NPK fertilizer was applied at every seedling at the rate of 0.05 kg for all blocks. Seedling heights and mean basal diameter (mm) were assessed at 9 months after planting. Soil samples for microbial study were taken before and after planting at 30 cm depth and screened for mycorrhizal spores and roots at the end of the experiment. Increased values for seedling heights and mean basal diameter (20-35%) were recorded for treatments B and C. Results pointed out that the amount of spore percentages were somewhat reduced in C and D and a slight increase was seen in treatments A and B. Root inoculation percentages in A and C were somewhat higher (1- 6%) as compared to B and D (0.5%). Early findings point out that application of gypsum and composts were not detrimental to the microbial population of arbuscular mycorrhiza as these treatments showed higher presence of hyphae and vesicles in fine roots and did not hamper physical growth. The role of soil amendments needs to be further investigated in terms of enhancing soil microbial population.

Understory ferns promote the restoration of soil microbial diversity and function in previously degraded lands

Microorganisms facilitate the recovery of previously degraded soils, such as degraded lands experiencing vegetation restoration and understory expansion, through vital soil functions like nutrient cycling and decomposing organic matter. Despite the role of microorganisms in recovery, little is known about the effects of the process on microbial diversity and function. Here, we performed an understory fern, Dicranopteris dichotoma (Thunb.) Berhn removal treatments nested within three Masson pine (Pinus massoniana L.) plantations with different restoration years in subtropical China. Three ferns treatments including no ferns cover, with ferns cover, and the ferns removal treatments were established to assess the impact of the ferns on soil microbial diversity and function during revegetation and drivers of observed changes. We combined high-throughput sequencing, network structure modeling, and function prediction of soil bacterial and fungal communities to determine microbial diversity and functions. Our results showed that soil bacterial and fungal diversity increased with restoration time. Understory ferns significantly increased soil microbial diversity in the un-restored land but the effect became smaller in two restored sites. Understory ferns significantly increased the relative abundance of bacterial phyla Proteobacteria and Acidobacteria, but decreased that of Chloroflexi and Firmicutes. Furthermore, the presence of ferns increased the abundance of Basidiomycota, but increased the abundance of Ascomycota. Co-occurrence network analysis revealed that the presence of ferns leads to more complex of bacterial networks with more connections, nodes, average degrees, betweenness, and degrees. The functional predictions indicate that aerobic chemoheterotrophy, chemoheterotrophy, and nitrogen fixation functional groups play key roles in the nutrient cycling of soils with ferns cover. The bacterial and fungal community compositions were strongly affected by revegetation and understory ferns as litter biomass and soil nitrogen were identified as the key environmental factors. Our study highlights the role of understory in facilitating microbial diversity and function recovery during degraded lands restoration.

The effect of short-term fallowing on the microbial communities in forest soil cultivated with ginseng: Preliminary research.

Continuous cultivation of ginseng crops in fixed plots can lead to disease outbreaks, yield losses and replanting failures. Fallow periods can help restore soil health and increase the sustainability of agricultural systems; however, taking land out of production for extended periods is often not feasible. Short-term fallow periods could restore soil health, but few studies have examined the effects of short-term fallow treatment on the health of soil in ginseng fields. In this preliminary study, we used metagenomic analysis to assess changes in the abundance of major ginseng pathogens and soil health overall following a short-term fallow period in a region in the Changbai Mountains. A sample from a forest plot (Hx0ks), was compared to a sample from a field where ginseng was previously cultivated and then had been left fallow for two years (Hx2), and a sample from a field that had been fallow for two years and was subsequently replanted with ginseng (Clsd). Soil that was fallow for two years, and then replanted with ginseng, showed reduced nutrient content and lower diversity of soil bacterial and fungal communities than soil that remained fallow. Candidatus Solibacter (5%) and Rhizomicrobium (3%) were the most abudant bacterial genera in Hx2. Rhizomicrobium (4%) and Gemmatimonas (3%) were the most abundant bacterial genera in Clsd. Mortierella (22%) and Peziza (12%) dominated the fungal community in Hx2. Lecanicillium (38%) and Mortierella (13%) dominated the fungal community in Clsd. Fallow periods also increased the functional diversity of soil as predicted by PICRUSt and decreased the relative abundance of the pathogenic fungi. Preliminary findings were consistent with the hypothesis that fallow management in ginseng cultivation can improve soil microbial community structure and function and reduces the number of plant pathogens; however, testing this hypothesis will require replicated plots.

Positive rhizospheric effects on soil carbon are primarily controlled by abiotic rather than biotic factors across global agroecosystems

The carbon (C) that surrounds the rhizosphere serves as the nexus between soil, plants, and atmosphere. Although it is known that rhizospheric C is sensitive to soil management and environmental changes, the influences of crop roots on rhizospheric C across global agroecosystems have not yet been systematically quantified, which limits our understanding of the terrestrial C cycle. A comprehensive meta-analysis including 748, 294, and 695 paired data of soil organic carbon (SOC), dissolved organic carbon (DOC), and soil microbial biomass carbon (SMBC) in rhizosphere and corresponding bulk soil from 154 papers, together with 25 biotic and abiotic variables, was conducted to quantify the effects of the rhizosphere on soil carbon across global agroecosystems. We found that the rhizosphere had greater SOC, DOC, and SMBC compared to the bulk soil, with 7.0%, 34.6%, and 26.1%, respectively. Rhizospheric effects on SOC and DOC varied significantly with different climate zones, aridity indices, and crop types; however, this phenomenon did not occur with SMBC. Soil available nutrients were the main driving factor behind rhizospheric SOC (relative influence of 37.0%), whereas SMBC played a small role in regulating the rhizosphere DOC, aside from the aridity index, crop type, initial soil C, and soil pH. The soil microbial structure, diversity, and function were not critical for regulating rhizospheric C. Path analysis revealed an intercorrelated network involving climate, physicochemical soil properties, and SMBC to determine the rhizospheric impacts on SOC and DOC. Understanding the size and driving factors of the rhizospheric effects on soil C is useful for determining how crop selection might affect broader C and nutrient cycling in agroecosystems.

Phylogenetic diversity of stochasticity-dominated predatory myxobacterial community drives multi-nutrient cycling in typical farmland soils

Predatory myxobacteria are keystone taxa in the soil microbial food web that potentially regulate soil microbial community structure and ecosystem functions. However, little is known about the community assembly processes of myxobacteria in typical farmland soils over large geographic scales, in addition to their relationship with soil multi-nutrient cycling. Here, we used high-throughput sequencing techniques and phylogenetic null modeling analysis to investigate the distribution patterns and assembly processes of myxobacteria communities, in addition to interactions between myxobacteria communities and soil multi-nutrient cycling. Anaeromyxobacter (28.5 %) and Haliangium (19.6 %) were the dominant myxobacteria genera in all samples, and myxobacteria community similarities exhibited distinct distance–decay relationships. Stochastic processes (~77.8 %) were the dominant ecological processes driving the assembly of predatory myxobacteria communities over large geographical scales and under three fertilization regimes. Myxobacteria community structure was influenced by geographic factors (location and climate), soil factors (soil pH, soil organic carbon, total nitrogen, and total potassium), and fertilization, with myxobacteria community assembly being more sensitive to geographic factors. Organic-inorganic combined fertilization (NPKM) increased the proportions of deterministic processes in myxobacteria community assembly. Moreover, myxobacteria community assembly and diversity were closely associated with soil multi-nutrient cycling. Hence, myxobacteria phylogenetic α-diversity represented by NTI index is a potential bioindicators for soil multi-nutrient cycling. Overall, our findings comprehensively reveal the mechanisms of assembly of myxobacteria communities in soils over large geographic scales, and provide a theoretical basis for further research on the role of predatory bacteria on soil nutrient cycling in agro-ecosystems.

Significant changes in soil microbial community structure and metabolic function after Mikania micrantha invasion

Currently, Mikania micrantha (M. micrantha) has invaded Guangdong, Guangxi and other provinces in China, causing serious harm to the forests of southeastern China. Soil microorganisms play an important role in the establishment of M. micrantha invasion, affecting plant productivity, community dynamics, and ecosystem function. However, at present, how M. micrantha invasion affects soil carbon, nitrogen, and phosphorus phase functional genes and the environmental factors that cause gene expression changes remain unclear, especially in subtropical forest ecosystems. This study was conducted in Xiangtoushan National Forest Park in Guangdong Province to compare the changes in soil nutrients and microorganisms after M. micrantha invasion of a forest. The microbial community composition and metabolic function were explored by metagenome sequencing. Our results showed that after M. micrantha invasion, the soil was more suitable for the growth of gram-positive bacteria (Gemmatimonadetes). In addition, the soil microbial community structure and enzyme activity increased significantly after M. micrantha invasion. Correlation analysis and Mantel test results suggested that total phosphorus (TP), nitrate nitrogen (NO3–-N), and soil dissolved organic matter (DOM; DOC and DON), were the strong correlates of soil microbial nitrogen functional genes, while soil organic matter (SOM), soil organic carbon (SOC), total nitrogen (TN), and available phosphorus (Soil-AP) were strongly correlated with the expression of soil microbial phosphorus functional gene. Mikania micrantha invasion alters soil nutrients, microbial community composition and metabolic function in subtropical forests, creates a more favorable growth environment, and may form a positive feedback process conducive to M. micrantha invasion.

Pasture management intensification shifts the soil microbiome composition and ecosystem functions

Natural grasslands are important reservoirs of animal and plant biodiversity and provide several ecosystem services, through the action of soil microorganisms. The increased demand for food, energy, and cattle activity has led to the conversion of natural grasslands to cultivated systems. However, the consequences of this conversion for soil microbial diversity and ecosystem functioning are yet to be discovered. Here, we used the 16 S rRNA amplicon sequencing and a large set of soil and environmental variables to understand the possible effects of natural grasslands to cultivated pasture conversion on the soil microbial structure, composition, diversity, and functions. The study areas followed a gradient of increasing soil disturbance intensity, as follows: Natural grassland (NG), Improved-natural grassland (IG), Perennial-cultivated pasture (PP), and Annual-cultivated pasture (AP). Natural grassland conversion to managed and cultivated pastures decreased the abundances of Acidobacteria and Verrucomicrobia, while increased α-, γ-, and δ-Proteobacteria, Gemmatimonadetes, Bacteroidetes, Patescibacteria, and Latescibacteria. The predicted functional profiles have also changed, as functions like ‘cellulolytic and symbionts/parasites’ decreased after natural to cultivated pastures conversion, while ‘nitrogen respiration’, ‘sulfur respiration’, and ‘aromatic compound degradation’ functions increased. Aboveground plant diversity decrease influenced belowground microbial diversity. The main drivers of diversity, composition, and functional potential are associated with soil attributes affected by liming, like aluminum complexation. In conclusion, we have found taxonomic and functional differences between natural and managed grasslands (NG and IG, respectively) and cultivated pastures (PP and AP), with consequences for management strategies and biodiversity conservation priorities.

Isothiazolinone inhibition of soil microbial activity persists despite biocide dissipation

Soil microbial growth and activity are generally assumed to recover rapidly after dissipation of organic toxicants. We studied the effects of four readily degradable isothiazolinone biocides (benzisothiazolinone, BIT; methylisothiazolinone, MIT; octylisothiazolinone, OIT; 4,5-dichloro-2-octyl-isothiazolinone, DCOIT) on bacterial growth, fungal growth, basal respiration, and substrate-induced respiration in controlled soil microcosm experiments. Bacterial growth followed by fungal growth were the two most sensitive endpoints during the first two days. Significant dissipation of biocides occurred within just 8 h and 94–100% had dissipated after 40 days except for DCOIT tested at a high concentration (50 mg kg−1, 54% remaining after 40 d). Despite biocide dissipation, all isothiazolinones inhibited bacterial growth for >7 days, whereas fungal growth and substrate-induced respiration were inhibited for up to 40 days. Bacterial growth recovery after 40 days was linked to development of bacterial community tolerance for DCOIT, but not for the other less persistent isothiazolinones. Our study is the first to report on toxic effects of isothiazolinones on soil microbial growth and demonstrates that inhibitory effects of isothiazolinones on soil microbial growth and activity (especially fungal growth and substrate-induced respiration) persisted even long after biocide dissipation, indicating “legacy effects” and retarded recovery of soil microbial functions. We propose that retarded recovery of fungal, relative to bacterial, growth may be a general phenomenon during the dissipation of toxicants in contaminated soils and that it may be explained by intrinsic differences between bacterial and fungal biology in soil and by competitive interactions between these two dominant groups of soil microbial decomposers.

Positive contribution of predatory bacterial community to multiple nutrient cycling and microbial network complexity in arsenic-contaminated soils

Predatory bacteria are an essential group of micro-predators that can potentially regulate and control soil microbial communities and functions. Although soil arsenic (As) contamination affects soil microbial communities and ecosystem functions, the responses of predatory bacterial communities to As contamination and their contributions to soil multi-nutrient cycling remain unclear. This research gap hinders our ability to assess the effect of predatory bacteria on ecosystem service provision. Here, we used high-throughput Illumina sequencing of 16S rRNA gene amplicon technology to explore the community characteristics of predatory bacteria under varying levels of As contamination and its relationship to soil multi-nutrient cycling functions and microbial network complexity. We found that microbial network complexity and predatory bacterial diversity were significantly decreased at high As-contaminated sites than at non-contaminated sites (P < 0.05). As contamination also altered the composition of predatory bacteria, reducing the abundance of Anaeromyxobacter and Haliangium. By contrast, As contamination increased the relative abundance of some predatory bacterial genera resistant to heavy metal stress, such as Lysobacter and Ensifer. In As-contaminated soil, predatory bacterial diversity was significantly positively correlated with microbial network complexity and soil multi-nutrient cycling (P < 0.05). The abundance of dominant predatory bacteria was also significantly correlated with the abundance of keystone OTUs in the microbial network and soil multi-nutrient cycling (P < 0.05). Overall, predatory bacterial communities may contribute to the multi-nutrient cycling and microbial network complexity of As-contaminated soil, highlighting the potential role of predatory bacteria in maintaining microbial community stability and promoting soil nutrient cycling.

Increasing precipitation weakened the negative effects of simulated warming on soil microbial community composition in a semi-arid sandy grassland.

Soil microbial diversity, composition, and function are sensitive to global change factors. It has been predicted that the temperature and precipitation will increase in northern China. Although many studies have been carried out to reveal how global change factors affect soil microbial biomass and composition in terrestrial ecosystems, it is still unexplored how soil microbial diversity and composition, especially in microbial functional genes, respond to increasing precipitation and warming in a semiarid grassland of northern China. A field experiment was established to simulate warming and increasing precipitation in a temperate semiarid grassland of the Horqin region. Soil bacterial (16S) and fungal (ITS1) diversity, composition, and functional genes were analyzed after two growing seasons. The result showed that warming exerted negative effects on soil microbial diversity, composition, and predicted functional genes associated with carbon and nitrogen cycles. Increasing precipitation did not change soil microbial diversity, but it weakened the negative effects of simulated warming on soil microbial diversity. Bacterial and fungal diversities respond consistently to the global change scenario in semiarid sandy grassland, but the reasons were different for bacteria and fungi. The co-occurrence of warming and increasing precipitation will alleviate the negative effects of global change on biodiversity loss and ecosystem degradation under a predicted climate change scenario in a semiarid grassland. Our results provide evidence that soil microbial diversity, composition, and function changed under climate change conditions, and it will improve the predictive models of the ecological changes of temperate grassland in future climate change scenarios.

QMEC-based Analysis of the Soil Microbial Functional Potentials across Different Tibetan Plateau Glacier Forelands

Soil microorganisms dominate the biogeochemical cycles of elements in glacier forelands, which continue to expand due to the climate warming. We analyzed the soil microbial functional characteristics among three types of glacier forelands on the Tibetan Plateau: Yulong Glacier (Y), a temperate glacier; Tianshan Urumqi Glacier No.1 (T), a sub-continental glacier; and Laohugou Glacier No.12 (L), a continental glacier. Here, soil microbial functional genes were quantified using quantitative microbial element cycling technology (QMEC). We found that, in the three glacier forelands, the abundances of soil microbial functional genes related to hemicellulose degradation and reductive acetyl-CoA pathway were highest compared with other carbon-related functional genes. The main nitrogen cycling genes were involved in ammonification. The functional genes of the phosphorus cycle and sulfur cycle were related to organic phosphate mineralization and sulfur oxidation. Furthermore, the soils of the temperate glacier foreland with better hydrothermal conditions had the most complex microbial functional gene structure and the highest functional potentials, followed by those of the soils of continental glacier foreland with the driest environment. These significant differences in soil microbial functional genes among the three types of glacier forelands verified the impacts of geographic difference on microbial functional characteristics, as well as providing a basis for the study of soil microbial functions and biogeochemical cycles in glacier forelands.

Grazing lowers soil multifunctionality but boosts soil microbial network complexity and stability in a subtropical grassland of China.

Long-term grazing profoundly affects grassland ecosystems, whereas how the soil microbiome and multiple soil ecosystem functions alter in response to two-decades of grazing, especially how soil microbiome (diversity, composition, network complexity, and stability) forms soil multifunctionality is rarely addressed. We used a long-term buffalo grazing grassland to measure the responses of soil physicochemical attributes, stoichiometry, enzyme activities, soil microbial niche width, structure, functions, and networks to grazing in a subtropical grassland of Guizhou Plateau, China. The evidence from this work suggested that grazing elevated the soil hardness, available calcium content, and available magnesium content by 6.5, 1.9, and 1.9 times (p = 0.00015-0.0160) and acid phosphatase activity, bulk density, pH by 59, 8, and 0.5 unit (p = 0.0014-0.0370), but decreased the soil water content, available phosphorus content, and multifunctionality by 47, 73, and 9-21% (p = 0.0250-0.0460), respectively. Grazing intensified the soil microbial carbon limitation (+78%, p = 0.0260) as indicated by the increased investment in the soil β-glucosidase activity (+90%, p = 0.0120). Grazing enhanced the complexity and stability of the bacterial and fungal networks but reduced the bacterial Simpson diversity (p < 0.05). The bacterial diversity, network complexity, and stability had positive effects, while bacterial and fungal compositions had negative effects on multifunctionality. This work is an original attempt to show that grazing lowered multifunctionality via the reduced bacterial diversity and shifted soil bacterial and fungal compositions rather than the enhanced bacterial and fungal network complexities and stability by grazing. Protecting the bacterial diversity from decreasing, optimizing the composition of bacteria and fungi, and enhancing the complexity and stability of bacterial network may be conducive to improving the soil multifunction of grazing grassland, on a subtropical grassland.

Intercropping enhances microbial community diversity and ecosystem functioning in maize fields.

Intercropping, a widely used planting pattern, could affect soil physicochemical properties, microbial community diversity, and further crop yields. However, its impacts on soil microbial diversity and ecosystem functioning and further soil sustainability are poorly understood. We conducted field experiments by intercropping maize with four important crops (i.e., sesame, peanut, soybean, and sweet potato), and examined soil microbial community diversity and ecosystem functioning such as microbial biomass and enzyme activities under monocropping and intercropping. We quantified their intercropping effects on microbial diversity and ecosystem functions with effect size metric Cohen d by comparing to the monocropping of maize. We found that the four intercropping systems significantly increased soil aggregates in respective of the 2-0.25 mm grain size. Intercropping consistently elevated ecosystem functioning, such as soil enzyme activities of urease, phosphatase, and catalase, soil microbial biomass carbon and soil microbial biomass nitrogen. The Cohen d of bacterial richness also increased from 0.39 to 2.36, the latter of which was significant for maize/peanut intercropping. Notably, these ecosystem functions were strongly associated with the diversity of bacteria and fungi and the relative abundance of their ecological clusters identified with network analysis. Together, our findings indicate that intercropping generally affected soil physicochemical properties, ecosystem functions, and promoted microbial community diversity. More importantly, our findings highlight the important roles of microbial diversity of ecological clusters (that is, network modules) in maintaining ecosystem functioning after intercropping. These results will help to better understand the microbial diversity and ecosystem function in intercropping systems and guide agricultural practice.

Bioplastic (PHBV) addition to soil alters microbial community structure and negatively affects plant-microbial metabolic functioning in maize

Microplastic contamination poses a significant threat to agroecosystem functioning, provoking a move away from the use of conventional oil-based plastics in agriculture, to biodegradable alternatives that may be degraded over a shorter timescale. The impact of these bioplastics on plant and soil health, however, has received relatively little attention. Here, we investigated the effect of soil loading (0.01%, 0.1%, 1% and 10%) of biobased microplastic poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) on soil and plant ( Zea mays L.) health and function. We showed that PHBV caused a dose-dependent reduction in plant growth and foliar nitrogen (N) content while untargeted metabolite analysis revealed significant shifts in foliar metabolic function. These results were also reflected in soil, where PHBV led to reduced plant availability of both ammonium and nitrate. Soil 14 C-isotope tracing and 16 S metabarcoding revealed that PHBV supressed microbial activity, reduced bacterial diversity and shifted microbial community structure, inducing a major shift in soil metabolic pathways, and thus functioning. Overall, our data suggests that the bioplastic PHBV is not environmentally benign and that contamination levels as low as 0.01% (0.01 mg kg -1 ) can induce significant short-term changes in both plant and soil microbial functioning, with potential implications for long term agroecosystem health. • Effect of biopolymer PHBV microplastic on soil and plant health was investigated • PHBV addition caused a dose-dependent negative effect on soil and plant health • PHBV addition altered foliar metabolism and reduced plant growth and foliar N • PHBV reduced soil microbial activity and changed the bacterial community structure • Bioplastics may not be environmentally benign

Effects of Continuous Straw Returning on Soil Functional Microorganisms and Microbial Communities

This study examined the changes in soil enzymatic activity, microbial carbon source metabolic diversity, and straw decomposition rates in paddy fields treated with 1, 2, or 3years of straw returning (SR1-SR3). The soil's ability to decompose straw and cellulolytic bacteria increased with the number of treatment years (1: 31.9% vs. 2: 43.9% vs. 3: 51.9%, P < 0.05). The numbers of Azotobacter, Nitrobacteria, cellulolytic bacteria, and inorganic phosphate bacteria increased progressively with the numbers of straw returning years. Cellulolytic bacteria and inorganic phosphate bacteria were significantly positively correlated with the decomposition rate (r = 0.783 and r = 0.375, P < 0.05). Based on 16S sequencing results, straw returning improved the microbial diversity of paddy soils by increasing unclassified bacteria and keeping dominant soil microorganism populations unchanged. The relative importance of individual microbial taxa was compared using random forest models. Proteobacteria, ammoniating bacteria, and potassium dissolving bacteria contributed to peroxidase activity. The significant contributors to phosphate monoesterase were Acidobacteriota, Desulfobacterota, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria. Proteobacteria, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria contributed to urease activity. Desulfobacterota, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria contributed to the neutral invertase activity. In conclusion, soil microbial community structure and function were affected within 2years of straw returning, which was driven by the combined effects of soil organic carbon, available nitrogen, available potassium, and pH. With elapsing straw returning years, soil properties interacted with soil microbial communities, and a healthier soil micro-ecological environment would form.

Compost amendment to enhance carbon sequestration in rangelands

Rangelands contain 20% of global soil carbon (C). Past management of rangelands has resulted in significant losses of soil C, threatening the long-term productivity and sustainability of these ecosystems. Compost amendments have been proposed as a means to increase soil C sequestration while providing important cobenefits to rangeland ecosystems and land managers. Here, we review the literature on the effects of compost amendments on soil and plant characteristics and rates of soil C storage. We extracted values related to biological, physical, and chemical responses to compost applications in rangelands in eight countries and on five continents. Studies reported both short (&lt;1 y) and long-term (&gt;12 y) effects with compost types derived from green waste, food waste, manure, and biosolids. Generally, we found that compost amendments improved aboveground production by &gt;40%, and belowground C content by 50%. Further benefits of compost additions included increasing aggregate stability (~42%), water retention (~18%), nutrient availability (~37% and 126% for nitrogen [N] and phosphorus [P], respectively), as well as generally reducing erosion but with high variability. We found little to no effect of compost amendments on plant diversity and very few studies investigated effects on soil microbial community and function. Both field and modeling studies demonstrated that the changes in soil C from compost amendments can result in long-term C storage. Overall, results suggest that compost amendments may contribute to rangeland resilience to climate change with the additional benefit of climate mitigation via soil C sequestration.

Plant species, nitrogen status and endophytes are drivers of soil microbial communities in grasslands

Context There is concern that the introduction of ‘novel’ plant germplasm/traits could outpace our capacity to measure and so assess their impacts on soil microbial communities and function. Aim This study aimed to investigate the effects of plant species/functional traits, nitrogen (N) fertilisation and endophyte infection on grassland soil microbial communities within a short time span of 2 years. Methods Two field experiments with monoculture plots were conducted in a common soil. Experiment 1 compared grasses and legumes, using two cultivars of perennial ryegrass (Lolium perenne) that varied in fructan content, along with the legumes white clover (Trifolium repens) and bird’s-foot trefoil (Lotus pedunculatus) that varied in tannin content. Grass treatments received high and low N application levels. Experiment 2 compared the presence/absence of Epichloë strains in ryegrass, tall fescue (Schedonorus phoenix) and meadow fescue (Schedonorus pratensis). Soil microbial communities were analysed by using high-throughput sequencing of DNA isolated from bulk soil cores. Key results Higher abundance of ligninolytic fungi was found in grass soils and pectinolytic fungi in legume soils. Levels of N fertilisation and fructan in ryegrass had only minor effects on soil fungal communities. By contrast, N fertilisation or fixation had a strong effect on bacterial communities, with higher abundance of nitrifiers and denitrifiers in high-N grass soils and in legume soils than in low-N grass soils. Epichloë affected soil microbiota by reducing the abundance of certain fungal phytopathogens, increasing mycorrhizal fungi and reducing N-fixing bacteria. Conclusions Chemical composition of plant cell walls, which differs between grasses and legumes, and presence of Epichloë in grasses were the main drivers of shifts in soil microbial communities. Implications Impacts of farming practices such as mono- or poly-culture, N fertilisation and presence of Epichloë in grasses on soil microbial communities should be considered in pasture management.