Microbial Necromass Research Articles

Effect of fire on microbial necromass carbon content is regulated by soil depth, time since fire, and plant litter input in subtropical forests

Effect of fire on microbial necromass carbon content is regulated by soil depth, time since fire, and plant litter input in subtropical forests

Soil microbial respiration does not respond to nitrogen deposition but increases with latitude

AbstractFacing global changes, substantial modifications in soil microbes and their functions have been widely evidenced and connected. However, the response of soil microbial respiration (MR) to increasing nitrogen (N) deposition and the role of microbial characteristics in controlling this response remain elusive. In this study, we quantified the intensity of the soil MR in terrestrial ecosystems that suffered elevated N deposition. High‐throughput quantitative sequencing and phospholipid fatty acids were employed to analyse microbial community properties and biomass, whilst microbial necromass was quantified using biomarker amino sugars. Our results revealed that soil MR kept stable under N deposition. Microorganisms maintained their respiration rates by modifying the characteristics of enzymes rather than altering microbial community properties or biomass. Notably, soil MR increased with latitude across study sites, which was attributed to the restriction of microbial activity by bacterial necromass. Supporting this observation, the recalcitrance of the soil carbon (C) pool to microbial degradation was evidenced to be the stability mechanism underlying the spatial variations in MR. Overall, we propose that MR is resistant to short‐term N deposition, whilst it exhibits a pronounced latitude dependence as shaped by the recalcitrant C pool. Our findings provide crucial insights into the microbial mechanisms of soil C dynamics under global change, contributing to the advancement of soil C models.

Grassland degraded patchiness reduces microbial necromass content but increases contribution to soil organic carbon accumulation

Plant and microbially derived carbon (C) are the two major sources of soil organic carbon (SOC), and their ratio impacts SOC composition, accumulation, stability, and turnover. The contributions of and the key factors defining the plant and microbial C in SOC with grassland patches are not well known. Here, we aim to address this issue by analyzing lignin phenols, amino sugars, glomalin-related soil proteins (GRSP), enzyme activities, particulate organic carbon (POC), and mineral-associated organic carbon (MAOC). Shrubby patches showed increased SOC and POC due to higher plant inputs, thereby stimulating plant-derived C (e.g., lignin phenol) accumulation. While degraded and exposed patches exhibited higher microbially derived C due to reduced plant input. After grassland degradation, POC content decreased faster than MAOC, and plant biomarkers (lignin phenols) declined faster than microbial biomarkers (amino sugars). As grassland degradation intensified, microbial necromass C and GRSP (gelling agents) increased their contribution to SOC formation. Grassland degradation stimulated the stabilization of microbially derived C in the form of MAOC. Further analyses revealed that microorganisms have a C and P co-limitation, stimulating the recycling of necromass, resulting in the proportion of microbial necromass C in the SOC remaining essentially stable with grassland degradation. Overall, with the grassland degradation, the relative proportion of the plant component decreases while than of the microbial component increases and existed in the form of MAOC. This is attributed to the physical protection of SOC by GRSP cementation. Therefore, different sources of SOC should be considered in evaluating SOC responses to grassland degradation, which has important implications for predicting dynamics in SOC under climate change and anthropogenic factors.

Microbial necromass contribution to soil carbon storage via community assembly processes

Soil organic matter has been well acknowledged as a natural solution to mitigate climate change and to maintain agricultural productivity. Microbial necromass is an important contributor to soil organic carbon (SOC) storage, and serves as a resource pool for microbial utilization. The trade-off between microbial births/deaths and resource acquisition might influence the fate of microbial necromass in the SOC pool, which remains poorly understood. We coupled soil microbial assembly with microbial necromass contribution to SOC on a long-term, no-till (NT) farm that received maize (Zea mays L.) stover mulching in amounts of 0 %, 33 %, 67 %, and 100 % for 8 y. We characterized soil microbial assembly using the Infer Community Assembly Mechanisms by Phylogenetic-bin-based null model (iCAMP), and microbial necromass using its biomarker amino sugars. We found that 100 % maize stover mulching (NT100) was associated with significantly lower amino sugars (66.4 mg g−1 SOC) than the other treatments (>70 mg g−1 SOC). Bacterial and fungal communities responded divergently to maize stover mulching: bacterial communities were positive for phylogenetic diversity, while fungal communities were positive for taxonomic richness. Soil bacterial communities influenced microbial necromass contribution to SOC through determinism on certain phylogenetic groups and bacterial bin composition, while fungal communities impacted SOC accumulation through taxonomic richness, which is enhanced by the positive contribution of dispersal limitation-dominated saprotrophic guilds. The prevalence of homogeneous selection and dispersal limitation on microbial cell wall-degrading bacteria, specifically Chitinophagaceae, along with increased soil fungal richness and interactions, might induce the decreased microbial necromass contribution to SOC under NT100. Our findings shed new light on the role of microbial assembly in shaping the dynamics of microbial necromass and SOC storage. This advances our understanding of the biological mechanisms that underpin microbial necromass associated with SOC storage, with implications for sustainable agriculture and mitigation of climate change.

Difference in soil microbial necromass carbon accumulation induced by three crops straw mulching for 4 years in a citrus orchard

Difference in soil microbial necromass carbon accumulation induced by three crops straw mulching for 4 years in a citrus orchard

Effects of straw biochar on microbial-derived carbon: A global meta-analysis

Pyrolyzing biomass (e.g., crop straw) to produce biochar is a sustainable strategy in agricultural farmlands. Straw-derived biochar could increase soil organic carbon (SOC) and microbial-derived carbon (C) compared to no addition, while it is imperative to understand the effects of straw-derived biochar compared to its feedstock (e.g., straw). We retrieved 321 and 387 observations to investigate the effects of straw-derived biochar on microbial-derived C (e.g., microbial biomass C (MBC) and microbial necromass C (MNC)) taking no addition and straw as control, respectively. Notably, straw-derived biochar significantly increased dissolved organic C (DOC) by 24.9% and provided available substrates for microbial utilization, thus improving MBC by 16.7% and MNC by 19.7% compared to no addition. Nevertheless, compared to its feedstock (crop straw), straw-derived biochar significantly decreased MBC by 26.1% and MNC by 18.0% attributed to lower DOC, supported by a positive correlation between MBC and DOC (R2 = 0.53). A negative correlation between changes in MBC and SOC indicated the adverse of microbial activity for C accrual under conversion from straw to biochar. Moreover, soil layer, experiment duration, and initial C/N ratio are the crucial factors affecting MBC under the conversion from straw to biochar. Specifically, with significant variations among subgroups, when compared to straw addition, straw-derived biochar had lower reduction in MBC observed on 0–5 cm layers, mean annual precipitation ≥550 mm, mean annual temperature ≥10 °C, clay loam soil, experiment duration≥1 yr, initial SOC≥14 g kg−1, pH≥8, and bulk density ≥1.28 g cm−3. Straw-derived biochar even increased MBC by 32.8% in an anaerobic environment, associated with biochar produced under limited oxygen and anaerobic microorganisms dominating the microbial community. This study concludes that the conversion from crop straw to biochar increases SOC but constrains microbial-derived C, which may disturb the microbial-mediated C-cycling process.

Gradual and abrupt increase in atmospheric CO2 concentrations trigger divergent responses of microbial necromass accumulation in paddy soils

Microbial necromass C (MNC) plays a critical role in promoting soil organic C (SOC) formation and stabilization, particularly in the context of climate change. Most investigations on the impact of elevated CO2 concentrations (eCO2) on MNC have been performed by exposing ecosystems to an abrupt increase in CO2. However, the atmospheric CO2 increase is a gradual process, and knowledge about the response of necromass to gradual increase in CO2 is lacking. We tested the hypothesis that microbial necromass would show different responses to abrupt and gradual CO2 increases. Furthermore, it is still unknown whether eCO2 will trigger similar responses between surface and subsurface soil layers. Here, we determined the MNC concentrations and their proportions in SOC in surface and subsurface soil layers via open-top chambers. CO2 treatments included ambient control, abrupt CO2 increase by 200 ppm above control, and gradual CO2 increase by 40 ppm each year until reaching 200 ppm over five years. Overall, compared with the ambient control, abrupt eCO2 induced a significantly stronger decrease in necromass (20.3 %) when averaged across three soil layers, while gradual eCO2 led to insignificant variations in necromass (6.7 %). The necromass proportion in SOC decreased with depth under both eCO2 treatments with a significant decline occurring in abrupt eCO2 treatment. The observed greater magnitude of eCO2 effects on fungal necromass relative to bacterial necromass in subsurface layers illustrates a distinct microbial community response to climate change. Taken together, abrupt and gradual eCO2 approaches differed in their impact on MNC, and its response to eCO2 may be somewhat overestimated by abrupt eCO2 approach. Furthermore, MNC in subsurface soil witnessed a more sensitivity or vulnerability to eCO2 than that of topsoil. We suggest vigilant attention will need to be paid to the feedback of necromass C in deep soil poised by future climate change.

Variations in source-specific soil organic matter components across 32 forest sites in China

Forest soils store substantial amounts of carbon in various soil organic matter (SOM) components due to high plant litter inputs and active microbial turnover. However, the variations in plant- and microbial-derived SOM components in surface and subsurface forest soils across a wide geographic scale remain poorly understood. This study investigated the SOM components from aboveground and belowground plant inputs and fungal and bacterial necromass in surface (soil0–5 cm) and subsurface (soil5–10 cm) soils across 32 forest sites in China and analyzed their relationships with climate and edaphic factors. Compared to soil0–5 cm, soil5–10 cm exhibited lower soil organic carbon content and cutin biomarker concentration but higher concentrations of fungal necromass carbon and lignin phenols. Higher mean annual precipitation led to higher concentrations of cutin and suberin biomarkers in soil0–5 cm and soil5–10 cm, respectively. Higher soil organic carbon content was associated with lower plant-derived lignin biomarkers, higher lignin oxidation degrees, and increased microbial necromass-derived amino sugars across sites, highlighting the pivotal role of microbial necromass in SOM stabilization. Additionally, both fungal and bacterial necromass decreased with increasing mineral weathering across sites. These insights improve the understanding of environmental drivers of source-specific carbon storage in forest soils.Graphical

Soil organic matter persistence in hyperhumic colluvial soils caused by palaeofires, root inputs and mineral binding

Understanding the formation of long-term persistent soil organic matter (SOM) is key to optimizing soil management and predicting the response of the terrestrial organic carbon (OC) pool to climate change, yet our knowledge of the soil-type dependent weight of different stabilization pathways (e.g., recalcitrance and mineral binding) is fragmentary. Owing to their stratigraphy, the exceptionally SOM-rich (up to 2 m of mineral soil with >5% OC) colluvial slope deposits of Atlantic Europe (Haplic Umbrisol [colluvic/hyperhumic]) are archives of palaeo-environmental conditions including SOM formation pathways. The objective of this study was to determine how the different drivers of persistent SOM formation influenced the formation of these organic-rich soils. For this purpose, we use Holocene (∼9000 yrs) molecular composition records obtained from pyrolysis-GC–MS (Py-GC–MS) and thermally assisted hydrolysis and methylation (THM-GC–MS). The results emphasize three pathways to stability (i.e., persistence on millennial timescales): 1) palaeofires that generated recalcitrant pyrogenic SOM, 2) release of root-derived aliphatic macromolecules (suberin-like SOM), and 3) formation of microbial necromass. Pathways 1 and 2 are controlled by land use: Pathway 1 was relatively important under intense anthropogenic fire regimes and pyrophytic shrubland expansion; Pathway 2 was stimulated during early forest phases and under pasture conditions, when past societies focused vegetation management on grazing instead of fire; Pathway 3 was controlled by binding with aluminium-dominated mineral phases. However, we found indications that Pathway 2 (suberin input and preservation) relied partially on sorptive preservation as well. Aided by structured equation modeling (SEM), we show that the formation of persistent SOM pools was driven by balanced weights of i) microbial vs. plant-derived SOM and ii) intrinsic chemical properties of SOM (recalcitrance continuum) vs. mineral binding/occlusion, which varied in keeping with interactions between past land use, topography and vegetation. These findings are inconsistent with the prevalent paradigm of persistent SOM formation by sorptive/occlusive preservation of microbial necromass alone.

Variation of microbial necromass carbon and its potential relationship with humification during composting of chicken manure with and without biochar addition

Microbial necromass carbon (MNC) is an important stable organic C component. However, the variation of MNC and its potential relationship with humus components in composting remains uncertain. During a 45-day chicken manure composting study with and without biochar, MNC ranged from 24.9 to 77.9 g/kg and increased significantly by 80.9 % to 133 %. MNC constituted 5.77 % to 21.3 % of total organic C, with bacterial/fungal necromass C ratio ranging from 0.82 to 1.78. The MNC/humus C ratio ranged from 0.15 to 0.55, and humic acid C showed significant positive associations with bacterial necromass C (R2 = 0.72) and fungal necromass C (R2 = 0.51). Biochar addition reduced electrical conductivity and moisture content, increased pH, and induced microbial phosphorus limitation, thereby enhancing MNC content by 29.2 % and promoting humification. Our study is the first to elucidate the relationship between microbial necromass and humus substances, providing fundamental data for advancing the microbial carbon pump theory in composting.

Impact of long-term tillage on the soil organic carbon storage and its composition in black soil.

Soil organic carbon (SOC) is essential for maintaining soil fertility and promoting sustainable agricultu-ral development. We investigated the impact of long-term tillage practices on soil organic carbon storage (SOCS) and its components in dryland farming areas of the black soil region, based on a 39-year tillage practice experiment. We compared the effects of different tillage practices (conventional rotary and ridge tillage, CT; no-tillage, NT; subsoiling tillage, ST; moldboard plowing, MP) on SOCS, active organic carbon components, and microbial necromass carbon (MNC) content in the 0-40 cm soil layer. The results showed that, compared to CT, NT significantly increased the contents of SOCS, SOC, dissolved organic carbon (DOC), microbial biomass carbon (MBC), easily oxidizable organic carbon (EOC), and MNC in the 0-20 cm soil layer. Both ST and MP significantly improved the contents of SOCS, SOC, and EOC in 0-20 and 20-40 cm soil layers compared to CT and increased MBC content in the 20-40 cm soil layer. Additionally, MP treatment significantly improved the contents of DOC, particulate organic carbon, and MNC in the 20-40 cm soil layer compared to other treatments. ST and MP significantly reduced the contribution rate of MNC to SOC in both soil layers compared to CT and NT treatments. Results of structural equation modeling showed that enhancing the mean weight diameter of soil aggregates, field capacity, and total phosphorus content, along with increasing the activities of β-glucosidase, amylase, and lignin peroxidase, could promote MNC accumulation. MP treatment facilitated the uniform distribution of SOC, active organic carbon, and MNC in the 0-40 cm soil layer, which was more conducive to the fixation of SOC in farmland in the black soil region.

Dual roles of microbes in mediating soil carbon dynamics in response to warming

Understanding the alterations in soil microbial communities in response to climate warming and their controls over soil carbon (C) processes is crucial for projecting permafrost C-climate feedback. However, previous studies have mainly focused on microorganism-mediated soil C release, and little is known about whether and how climate warming affects microbial anabolism and the subsequent C input in permafrost regions. Here, based on a more than half-decade of in situ warming experiment, we show that compared with ambient control, warming significantly reduces microbial C use efficiency and enhances microbial network complexity, which promotes soil heterotrophic respiration. Meanwhile, microbial necromass markedly accumulates under warming likely due to preferential microbial decomposition of plant-derived C, further leading to the increase in mineral-associated organic C. Altogether, these results demonstrate dual roles of microbes in affecting soil C release and stabilization, implying that permafrost C-climate feedback would weaken over time with dampened response of microbial respiration and increased proportion of stable C pool.

Microbial life-history strategies and particulate organic carbon mediate formation of microbial necromass carbon and stabilization in response to biochar addition

Microbial necromass carbon (MNC) contributes significantly to the formation of soil organic carbon (SOC). However, the microbial carbon sequestration effect of biochar is often underestimated and influenced by nutrient availability. The mechanisms associated with the formation and stabilization of MNC remain unclear, especially under the combined application of biochar and nitrogen (N) fertilizer. Thus, in a long-term field experiment (11 years) based on biochar application, we utilized bacterial 16S rRNA gene sequencing, fungal ITS amplicon sequencing, metagenomics, and microbial biomarkers to examine the interactions between MNC accumulation and microbial metabolic strategies under combined treatment with biochar and N fertilizer. We aimed to identify the critical microbial modules and species involved, and to analyze the sites where MNC was immobilized from various components. Biochar application increased the MNC content by 13.9 %. Among the MNC components, fungal necromass contributed more to MNC, but bacteria were more readily enriched after biochar application. The microbial life-history strategies that affected MNC formation under the application of various amounts biochar were linked to the N application level. Under N added at 226.5 kg ha−1, communities such as Actinobacteria and Bacteroidetes with high-growth yield strategies were prevalent and contributed to MNC production. By contrast, under N added at 113.25 kg ha−1 with high biochar application, Proteobacteria with strong resource acquisition strategies were dominant and MNC accumulation was lower. The mineral-associated organic carbon pool was rapidly saturated with the addition of biochar, so the contribution of fungal necromass carbon may have been reduced by reutilization, thereby resulting in the more rapid preservation of bacterial necromass carbon in the particulate organic carbon pool. Overall, our findings indicate that microbial life history traits are crucial for linking microbial metabolic processes to the accumulation and stabilization of MNC, thereby highlighting the their importance for SOC accumulation in farmland soils, and the need to tailor appropriate biochar and N fertilizer application strategies for agricultural soils.

Alfalfa-livestock system promotes the accumulation of soil organic carbon in a semi-arid marginal land

Developing cropland in marginal lands presents a potential solution to address food security challenges. However, the low organic carbon (C) content in these soils severely constrains crop productivity, and developing cropland aggravates the loss of soil organic carbon (SOC). Therefore, it is essential to elevate the SOC content via a profitable solution for food production. In this study, we examine the impacts of land use changes (fallow, cropland, and Alfalfa-livestock system [AL]) over 12 years on SOC content, composition, and mineralization rate in a semiarid marginal land. SOC was categorized into three components: plant necromass C, microbial necromass C, and "other C." We utilized lignin and amino sugars as biomarkers to assess plant and microbial necromass C content, respectively, and the remaining component was other C. We found that AL increased SOC contents in 0–15 cm by 142 % and 123 % compared to fallow and cropland. Other C was the main factor driving SOC accumulation in AL compared to fallow and cropland, which contributed 2 times more than microbial necromass C (63 % VS 31 %), while plant necromass contributed less than 7 %. Furthermore, AL decreased C mineralization per unit of SOC than fallow and cropland due to increased soil available N contents. In conclusion, AL facilitated a rapid increase in SOC contents on marginal lands by fostering the accumulation of microbial necromass C and other C while inhibiting SOC mineralization. This finding helps improve the productivity and sustainability of marginal croplands.

Plant species richness and legume presence increase microbial necromass carbon accumulation

Biodiversity control experiments have demonstrated that higher plant species richness increases plant production and soil organic carbon (SOC) stocks. However, although microbial necromass C constitutes a substantial and stable component of SOC, the effect of species richness on microbial necromass C accumulation remains unclear, especially concerning the presence or absence of legumes. We conducted an 8-year grassland biodiversity experiment to investigate how changes in plant diversity, with or without legumes, affect microbial necromass C and its proportion in SOC. Aboveground and root biomass increased by 254 % and 195 %, respectively, from monoculture plots to those with twelve species. SOC, total nitrogen (N), and microbial biomass C (MBC) all increased with plant species richness, independent of legume presence. The presence of legumes further increased the SOC, total N, MBC, and inorganic N compared to plots without legumes. Microbial necromass C increased by 48.3 % in twelve-species mixtures compared to monocultures; however, the ratio of microbial necromass C to SOC remained stable with increasing species diversity. Notably, the presence of legumes increased both the accumulation of microbial necromass C and its proportion in SOC compared to the absence of legumes at both high and low species diversity levels. This greater accumulation was primarily driven by increased plant productivity and microbial biomass, induced by legume-associated nitrogen fixation. Our findings highlight significant implications for ecosystem management: maintaining high levels of plant species diversity, particularly in conjunction with legumes, can increase microbial necromass C and enhance soil C sequestration.

Microbial necromass facilitated the humification process through amino sugar reactions during the co-composting of cow manure plus sawdust.

Humus (HS) reservoirs can embed microbial necromass (including cell wall components that are intact or with varying degrees of fragmentation) in small pores, raising widespread concerns about the potential for C/N interception and stability in composting systems. In this study, fresh cow manure and sawdust were used for microbial solid fermentation, and the significance of microbial residues in promoting humification was elucidated by measuring their physicochemical properties and analyzing their microbial informatics. These results showed that the stimulation of external carbon sources (NaHCO3) led to an increase in the accumulation of bacterial necromass C/N from 6.19 and 0.91µg/mg to 21.57 and 3.20µg/mg, respectively. Additionally, fungal necromass C/N values were about 3 times higher than the initial values. This contributed to the increase in HS content and the increased condensation of polysaccharides and nitrogen-containing compounds during maturation. The formation of cellular debris mainly depends on the enrichment of Actinobacteria, Proteobacteria, Ascomycota, and Chytridiomycota. Furthermore, Euryarchaeota was the core functional microorganism secreting cell wall lytic enzymes (including AA3, AA7, GH23, and GH15). In conclusion, this study comprehensively analyzed the transformation mechanisms of cellular residuals at different profile scales, providing new insights into C/N cycles and sequestration.

How to get to the N – a call for interdisciplinary research on organic N utilization pathways by plants

Abstract Background and aims While nitrogen (N) derived from soil organic matter significantly sustains agricultural plants, the complexities of organic N utilization pathways remain poorly understood. Knowledge gaps persist regarding diverse organic N pools, the microbial processes in N mineralization, and how plants shape the N-mineralizing microbial community through root exudation. Results To address these gaps, we propose an integrated conceptual framework that explores the intricate interplay of soil, plant, and microbiome dynamics within the context of soil carbon (C) cycling. Emphasizing plant effects on gross depolymerization and deamination of organic N—a crucial yet often overlooked aspect—we aim to enhance our understanding of plant N utilization pathways. In this context, we suggest considering the linkages between root and hyphal exudation, followed by rhizosphere priming effects which in turn control N mobilization. Based on the relation between exudation and N turnover, we identify microbial necromass as a potentially important organic N source for plants. Furthermore, we propose applying root economic theory to gain insights into the diverse strategies employed by plants in accessing soil organic N. Stable isotope tracers and functional microbiome analytics provide tools to decipher the complex network of the pathways of organic N utilization. Conclusions The envisioned holistic framework for organic N utilization pathways, intricately connects plants, soil, and microorganisms. This lays the groundwork for sustainable agricultural practices, potentially reducing N losses.

Microbial metabolic traits drive the differential contribution of microbial necromass to soil organic carbon between the rhizosphere of absorptive roots and transport roots

The rhizosphere is a typical soil microbial hotspot, however, not a homogeneous entity. Due to root functional differentiation, different root functional modules (i.e., absorptive roots and transport roots) can play distinct roles in microbial necromass formation and subsequent soil organic carbon (SOC) sequestration by influencing microbial metabolic activity in the surrounding soil. Yet, how microbial metabolic traits mediated by different root functional modules regulate the accumulation of microbial necromass C (MNC) in the rhizosphere remains poorly understood. Herein, we quantified and compared the differences in the contribution of MNC to SOC between the rhizosphere of two root functional modules, and explored the role of microbial metabolic traits in influencing the contribution of MNC to rhizosphere SOC in different root functional modules in two spruce (Picea asperata Mast.) plantations. Our findings revealed that absorptive roots exhibited a significantly higher contribution of MNC to SOC (32.9–37.5%) compared to transport roots (27.7–30.5%) in the rhizosphere. This suggests that absorptive roots possess a greater ability to promote MNC accumulation in the rhizosphere than transport roots. This observation was mainly attributed to the difference in the trade-offs between microbial growth and investment traits between the two root functional modules. Specifically, the rhizosphere of absorptive roots had greater microbial C use efficiency (CUE), faster growth and turnover rates, lower respiratory quotients and biomass-specific enzyme activity than did those of transport roots, suggesting that absorptive roots support greater microbial growth yields and subsequently greater necromass production. Collectively, our findings demonstrate that the contribution of MNC to SOC in the rhizosphere largely depends on the trade-offs of microbial metabolic traits mediated by root functional differentiation. Our study also provides novel and direct empirical evidence supporting the need to integrate function-based fine root classifications with the different contributions of MNC to SOC sequestration in the rhizosphere into land surface models of C cycling.

Precise method to measure fungal and bacterial necromass using high pressure liquid chromatography with fluorescence detector adjusted to inorganic, organic and peat soils

Soil organic matter is the dominant pool of carbon (C) in terrestrial ecosystems. Recent advances in understanding of the mechanisms of C stabilization in the soil emphasize microbes as the main drivers. Special attention is placed on the accumulation of bacterial and fungal necromasses. This calls for development of fast and reliable methods to estimate microbial necromass in a various type of soils, including peat soils. Here we provide precise method to measure fungal and bacterial necromasses with high-pressure liquid chromatography-fluorescence detector (HPLC-FLD) and its comparison with gas chromatography method. Purity of the chromatographic peaks was confirmed with mass spectrometry. The HPLC-FLD method provides reliable results for mineral, organic and highly organic peat soils.

Profound loss of microbial necromass carbon in permafrost thaw-subsidence in the central Tibetan Plateau

Climate warming is causing rapid permafrost degradation, including thaw-induced subsidence, potentially resulting in heightened carbon release. Nevertheless, our understanding of the levels and variations of carbon components in permafrost, particularly during the degradation process, remains limited. The uncertainties arising from this process lead to inaccurate assessments of the climate effects during permafrost degradation. With vast expanses of permafrost in the Tibetan Plateau, there is limited research available on SOC components, particularly in the central Tibetan Plateau. Given remarkable variations in hydrothermal conditions across different areas of the Tibetan Plateau, the existing limited studies make it challenging to assess the overall SOC components in the permafrost across the Tibetan Plateau and simulate their future changes. In this study, we examined the properties of soil organic carbon (SOC) and microbial necromass carbon (MicrobialNC) in a representative permafrost thaw-subsidence area at the southern edge of continuous permafrost in the central Tibetan Plateau. The results indicate that prior to the thaw-subsidence, the permafrost had a SOC content of 72.68 ± 18.53 mg g−1, with MicrobialNC accounting for 49.6%. The thaw-subsidence of permafrost led to a 56.4% reduction in SOC, with MicrobialNC accounting for 70.0% of the lost SOC. MicrobialNC constitutes the primary component of permafrost SOC, and it is the main component that is lost during thaw-subsidence formation. Changes in MicrobialNC are primarily correlated with factors pH, plant input, and microbial properties. The present study holds crucial implications for both the ecological and biogeochemical processes associated with carbon release from permafrost, and it furnishes essential data necessary for modeling the global response of permafrost to climate warming. Based on this study and previous research, permafrost thawing in the Tibetan Plateau causes substantial loss of SOC. However, there's remarkable heterogeneity in SOC component changes across different regions, warranting further in-depth investigation.