Microbial Methanogenesis Research Articles

Characteristics and geological significance of carbon and oxygen isotopes of the Permian Lucaogou Formation dolomite in the southern Junggar Basin, northwestern China

Anomalously positive δ13C values in ancient dolomites are very rare. Dark gray argillaceous rocks of the lacustrine sediments of the Permian Lucaogou Formation are important source rocks in the Junggar Basin, and dolomites of varying thicknesses from 10 cm to 150 cm are often interspersed in argillaceous rocks. Based on the study of petrographic sections, this paper systematically analyzes the carbon and oxygen isotopes of dolomite and discusses the causes of abnormally high carbon isotope values and their significance in reconstructing paleoenvironment and paleoclimate. The results show that carbon isotope values are abnormally high in the dolomite of Lucaogou Formation, and the δ13C value is between +3.2 ‰ PDB and +19.6‰ PDB, with an average of +9.7‰ PDB. The δ18O values range from -17.4‰ PDB to -1.7‰ PDB, with an average of -8.1‰ PDB. From the lower part to the upper part of the Lucaogou Formation, the carbon isotope value gradually increases and becomes increasingly positive, and the carbon isotope of the dolomite deposited near the shore is more positive than that of the dolomite deposited far from the shore. The anomalously positive δ13C of the dolomite is mainly caused by microbial methanogenesis, with some contribution from evaporation. Microorganisms are mainly distributed at the redox interface. Evaporation controls the salinity and fluctuation of the redox interface in sedimentary water. The positive deviation difference in carbon isotopes between nearshore and offshore sedimentary dolomites may be related to the location of the redox interface during deposition. Together, the petrographic features and carbon and oxygen isotope signatures of the sections reflect the gradual evolution of the paleolake from a hydrologically open environment to a hydrologically closed one and the possible transition of the paleoclimate from a relatively warm to an arid condition, which is possibly a geochemical response to global climate change in the Permian period.

13C-enriched carbonate precipitates reveal intense methanogenic oil degradation in the upper Wuerhe Formation, Northwest China

Abstract Microbial methanogenesis from crude oil is an important source of CH4 for gas reservoirs and atmospheric greenhouse gases. However, its petrological records have not been found in natural environments, and the geological conditions under which it may occur remain unclear. Here, we provide the first petrological evidence of Fe(III)-mediated methanogenic hydrocarbon degradation in a deep subsurface oil reservoir in Northwest China. The major findings are as follows: (1) highly positive δ13C values (up to +16‰) of secondary calcite attributed to methanogenesis; (2) paragenetic relation of high-δ13C calcite to biodegraded hydrocarbon; and (3) remarkably high FeO contents (up to 8 wt%) and heavy δ56Fe ratios (up to +0.52‰) in calcite, indicative of microbial Fe(III) reduction. Our study shows that methanogenic hydrocarbon degradation can occur in Fe(III)-reducing environments. This process transformed hydrocarbons into CO2 and CH4, where the former mostly precipitated as Fe-rich calcite (the carbon sink), while the latter, representing an estimated ~1968 Tg, might have escaped into the overburden and atmosphere from the Permian reservoir during the Late Triassic to Early Jurassic, which may have acted as an important CH4 source in changing global climate in the geological past.

A non-methanogenic archaeon within the order Methanocellales

Serpentinization, a geochemical process found on modern and ancient Earth, provides an ultra-reducing environment that can support microbial methanogenesis and acetogenesis. Several groups of archaea, such as the order Methanocellales, are characterized by their ability to produce methane. Here, we generate metagenomic sequences from serpentinized springs in The Cedars, California, and construct a circularized metagenome-assembled genome of a Methanocellales archaeon, termed Met12, that lacks essential methanogenesis genes. The genome includes genes for an acetyl-CoA pathway, but lacks genes encoding methanogenesis enzymes such as methyl-coenzyme M reductase, heterodisulfide reductases and hydrogenases. In situ transcriptomic analyses reveal high expression of a multi-heme c-type cytochrome, and heterologous expression of this protein in a model bacterium demonstrates that it is capable of accepting electrons. Our results suggest that Met12, within the order Methanocellales, is not a methanogen but a CO2-reducing, electron-fueled acetogen without electron bifurcation.

Microbial mechanisms of C/N/S geochemical cycling during low-water-level sediment remediation in urban rivers

Low-water-level regulation has been effectively implemented in the restoration of urban river sediments in Guangzhou City, China. Further investigation is needed to understand the microbial mechanisms involved in pollutant degradation in low-water-level environments. This study examined sediment samples from nine rivers, including low-water-level rivers (LW), tidal waterways (TW), and enclosed rivers (ER). Metagenomic high-throughput sequencing and the Diting pipeline were utilized to investigate the microbial mechanisms involved in sediment C/N/S geochemical cycling during low-water-level regulation. The results reveal that the degree of pollution in LW sediment is lower compared to TW and ER sediment. LW sediment exhibits a higher capacity for pollutant degradation and elimination of black, odorous substances due to its stronger microbial methane oxidation, nitrification, denitrification, anammox, and oxidation of sulfide, sulfite, and thiosulfate. Conversely, TW and ER sediment showcase greater microbial methanogenesis, anaerobic fermentation, and sulfide generation abilities, leading to the persistence of black, odorous substances. Factors such as grit and silt content, nitrate, and ammonia concentrations impacted microbial metabolic pathways. Low-water-level regulation improved the micro-environment for functional microbes, facilitating pollutant removal and preventing black odorous substance accumulation. These findings provide insights into the microbial mechanisms underlying low-water-level regulation technology for sediment restoration in urban rivers.

New insights into the coal-associated methane architect: the ancient archaebacteria.

Exploration and marketable exploitation of coalbed methane (CBM) as cleaner fuel has been started globally. In addition, incidence of methane in coal basins is an imperative fraction of global carbon cycle. Significantly, subsurface coal ecosystem contains methane forming archaea. There is a rising attention in optimizing microbial coal gasification to exploit the abundant or inexpensive coal reserves worldwide. Therefore, it is essential to understand the coalbeds in geo-microbial perspective. Current review provides an in-depth analysis of recent advances in our understanding of how methanoarchaea are distributed in coal deposits globally. Specially, we highlight the findings on coal-associated methanoarchaeal existence, abundance, diversity, metabolic activity, and biogeography in diverse coal basins worldwide. Growing evidences indicates that we have arrived an exciting era of archaeal research. Moreover, gasification of coal into methane by utilizing microbial methanogenesis is a considerable way to mitigate the energy crisis for the rising world population.

Microbial methanogenesis in aerobic water: A key driver of surface methane enrichment in a deep reservoir

Significant amounts of the greenhouse gas methane (CH4) are released into the atmosphere worldwide via freshwater sources. The surface methane maximum (SMM), where methane is supersaturated in surface water, has been observed in aquatic systems and contributes significantly to emissions. However, little is known about the temporal and spatial variability of SMM or the mechanisms underlying its development in artificial reservoirs. Here, the community composition of methanogens as major methane producers in the water column and the mcrA gene was investigated, and the cause of surface methane supersaturation was analyzed. In accordance with the findings, elevated methane concentration of SMM in the transition zone, with an annually methane emission flux 2.47 times higher than the reservoir average on a large and deep reservoir. In the transition zone, methanogens with mcrA gene abundances ranging from 0.5 × 103–1.45 × 104 copies/L were found. Methanobacterium, Methanoseata and Methanosarcina were the three dominate methanogens, using both acetic acid and H2/CO2 pathways. In summary, this study contributes to our comprehension of CH4 fluxes and their role in the atmospheric methane budget. Moreover, it offers biological proof of methane generation, which could aid in understanding the role of microbial methanogenesis in aerobic water.

Microbial coalbed gas and its geological formation process in the Jimsar region of the southern Junggar Basin, NW China

The southern Junggar Basin is abundant in coalbed gas (CBG) resources, with the Jimsar region in the southern part of the basin emerging as a potential CBG development demonstration area. However, further development of the CBG in this region is restricted by the lack of understanding of the genesis and gas reservoir formation mechanisms of the CBG. This study systematically collected CBG samples and associated water samples from the Jimsar region. Stable isotope, hydrogeochemical, and 16S ribosomal ribonucleic acid (rRNA) sequencing studies were carried out. The results demonstrate that the CBG is the primary microbial gas, and CO2 reduction is its formation pathway. Hydrogeochemical analysis shows that the coalbed water receives recharge from meteoric or surface water. The water environment is relatively active (open system). The total dissolved organic carbon (TDOC) in the coalbed water is primarily from coal, and the supply and consumption of the total dissolved nitrogen (TDN) may be relatively balanced. The dissolution of CO2 is the main source of the dissolved inorganic carbon (DIC). Furthermore, the positive δ13CDIC values and high alkalinity indicate microbial methanogenesis. Microbial community structure analysis revealed that the archaea are hydrogenotrophic methanogens in the Jimsar region. The microbial basis for the production of microbial gas is provided by the existence of hydrolytic, acidogenic, and hydrogen-producing acetogenic bacteria as well as methanogenic archaea. Natural gas genetic identification diagrams and detection of methane-oxidizing bacteria (Methylomicrobium) reveal that the CBG may be affected by slight oxidation. In addition, the methanogenic effect is much greater than the methane oxidation. Finally, based on these results and the regional tectonic background, the CBG enrichment and accumulation mode in the Jimsar region was established. This mode can be divided into three geological stages: burial and coalification, surface water recharge and microbial gas generation after uplift and denudation, and CBG accumulation controlled by reverse faults and hydrodynamic sealing. This study enriches the geological theory of CBG accumulation in the Jimsar region and provides guidance for the subsequent exploration and development of the CBG.

Genesis and Accumulation Mechanism of Low-Rank CBM: A Case Study in the Jiergalangtu Block of Erlian Basin, Northern China

Genesis and Accumulation Mechanism of Low-Rank CBM: A Case Study in the Jiergalangtu Block of Erlian Basin, Northern China

A comprehensive analysis of key factors influencing methane production from CO2 using microbial methanogenesis cells

With increasing attention on carbon capture and utilization (CCU) technologies for the conversion of CO2 into chemical products, microbial methanogenesis cells (MMCs) have been extensively studied over the past few decades for biomethane production. Using rapidly accumulating data for MMCs with varying configurations and operating conditions, a comprehensive analysis was conducted here to investigate the critical factors that influence methane production rates (MPR) in these systems. A comparison of MPR and set potentials or current densities showed weak linear relationships (R2 < 0.6, p < 0.05), indicating the significant contributions of other important factors impacting methane production. A non-quantitative analysis of these additional parameters indicated the potential importance of using metal catalysts for anode materials where oxygen evolution reaction occurs, while most previous MMC research focused more on cathode materials where the biocatalytic reaction occurs. The use of undefined mixed anaerobic cultures as inocula was found to be sufficient for producing high MPRs, as the electrochemical environment at the cathode provides a strong selective pressure to converge on desirable methanogenic cultures. Other operational parameters, such as catholyte pH control and CO2 supply methods, were also important factors impacting MPR in MMCs, indicating the cumulative impact of these various factors will require careful consideration in future research.

Earthquake-enhanced dissolved carbon cycles in ultra-deep ocean sediments

Hadal trenches are unique geological and ecological systems located along subduction zones. Earthquake-triggered turbidites act as efficient transport pathways of organic carbon (OC), yet remineralization and transformation of OC in these systems are not comprehensively understood. Here we measure concentrations and stable- and radiocarbon isotope signatures of dissolved organic and inorganic carbon (DOC, DIC) in the subsurface sediment interstitial water along the Japan Trench axis collected during the IODP Expedition 386. We find accumulation and aging of DOC and DIC in the subsurface sediments, which we interpret as enhanced production of labile dissolved carbon owing to earthquake-triggered turbidites, which supports intensive microbial methanogenesis in the trench sediments. The residual dissolved carbon accumulates in deep subsurface sediments and may continue to fuel the deep biosphere. Tectonic events can therefore enhance carbon accumulation and stimulate carbon transformation in plate convergent trench systems, which may accelerate carbon export into the subduction zones.

Fluid evolution and related fluid–rock interactions of the Oligocene Zhuhai sandstones in the Baiyun Sag, northern margin of the South China Sea

Pore fluids control the diagenetic processes and storage spaces of deep clastic rock reservoirs and have become a major area of interest within the fields of sedimentology and petroleum geology. This paper aims to relate the diagenetic processes of the Oligocene Zhuhai sandstones in the Baiyun Sag to pore fluids varying with burial depth. The types and distribution patterns of authigenic minerals are investigated through analysis of petrographic, mineralogical, and geochemical features to illustrate the origin and flow patterns of pore fluids and their influences on reservoir diagenesis. Strong cementation of eogenetic carbonate cement near the sandstone–mudstone interface was a consequence of material migration from adjacent mudstones on a large scale. The pore fluids were mainly affected by microbial methanogenesis and carbonate mineral dissolution in adjacent mudstones during eogenesis. The pore fluids were diffusively transported in a relatively open geochemical system within a local range. Support for this model is provided by the heavier stable isotopic values present in eogenetic calcite and dolomite. Feldspar dissolution during early mesogenesis was spatially accompanied by the precipitation of authigenic quartz and ferroan carbonate cement. Pore fluids in this period were rich in organic acids and CO2, and their migration mechanism was diffusive transport. The obviously lighter carbon and oxygen isotopic compositions of the ferroan calcite support this inference. During late mesogenesis, the input of deep hydrothermal fluid might have been partly responsible for the precipitation of ankerite, barite and authigenic albite. Oil charging may have inhibited carbonate cementation and compaction, accordingly preserving porosity, and together with authigenic kaolinite, might have promoted the transition of the reservoir from water wet to oil wet to the benefit of oil entrapment. The findings reported here shed new light on the evaluation and prediction of sandstone reservoirs that have experienced multiple periods of fluid flow.

Effects on global warming by microbial methanogenesis in alkaline lakes during the Late Paleozoic Ice Age (LPIA)

Abstract Methane (CH4) is an important greenhouse gas, but its behavior and influencing factors over geological time scales are not sufficiently clear. This study investigated the Late Paleozoic Ice Age (LPIA), which is thought to have experienced an interval of rapid warming at ca. 304 Ma, that may have been analogous to modern warming. To explore possible causes of this warming event, we investigated ancient alkaline lakes in the Junggar Basin, northwestern China. Results show that microbial CH4 cycling here was strong, as evidenced by carbonate δ13C (δ13Ccarb) values of &amp;gt;5‰, ~+0.6‰ offsets between pristane δ13C (δ13CPr) and phytane δ13C (δ13CPh) values, a 3β-methylhopane index of 9.5% ± 3.0%, and highly negative δ13C values of hopanes (–44‰ to –61‰). Low sulfate concentrations in the alkaline lakes made methanogenic archaea more competitive than sulfate-reducing bacteria, and the elevated levels of dissolved inorganic carbon promoted methanogenesis. Biogenic CH4 emissions from alkaline lakes, in addition to CO2, may have contributed to rapid climate warming.

Microbial distribution characteristics related to carbon cycle and their potential impact on methanogenesis of coal reservoirs in underground in situ environments

Microorganisms are one of the main driving forces of the cycle of carbon and other life elements in the underground environment. The natural environment is the comprehensive result of these microorganisms. In contrast, the study of coal reservoir microorganisms is mostly under laboratory conditions, which limits people's understanding of the symbiotic relationship between microorganisms, the interaction between microorganisms and the environment, and the distribution differences of microbial communities in the region. Similarly, the carbon cycle of the underground environment driven by essential microorganisms in coal reservoirs cannot be further studied. The geochemical process of underground methane generation and oxidation is critical in discussing the production and consumption of biomethane in the underground environment and the metabolic behavior of microorganisms. For this reason, we conducted biogeochemical tests and microbial sequencing on the water produced by coalbed methane wells in the south of the Qinshui Basin to analyze and improve the understanding of the distribution difference and metabolic behavior of microbial communities in coal reservoirs. The concentration of Cl− and HCO3− in the detention environment in the study area increases, while the concentration of SO42−, NO3−, NO2−, and Fe3+ decreases with the increase of coal seam depth, reflecting the distribution difference of hydrochemical environment and redox conditions of the underground reservoir in the study area. The results of microbial sequencing showed microbial methanogenesis in the study area, but it could also be consumed by microbial oxidation simultaneously. The microbial communities related to methane production and consumption had diversity distributions similar to geochemical parameters and geographical patterns. Methanogens and dissolved inorganic carbon isotopes confirmed the potential of in situ methane generation. Still, biomethane's enrichment and accumulation conditions and the impact of aerobic/anaerobic oxidation of methane need further study.

Identifying and Understanding Microbial Methanogenesis in CO2 Storage.

Carbon capture and storage (CCS) is an important component in many national net-zero strategies. Ensuring that CO2 can be safely and economically stored in geological systems is critical. To date, CCS research has focused on the physiochemical behavior of CO2, yet there has been little consideration of the subsurface microbial impact on CO2 storage. However, recent discoveries have shown that microbial processes (e.g., methanogenesis) can be significant. Importantly, methanogenesis may modify the fluid composition and the fluid dynamics within the storage reservoir. Such changes may subsequently reduce the volume of CO2 that can be stored and change the mobility and future trapping systematics of the evolved supercritical fluid. Here, we review the current knowledge of how microbial methanogenesis could impact CO2 storage, including the potential scale of methanogenesis and the range of geologic settings under which this process operates. We find that methanogenesis is possible in all storage target types; however, the kinetics and energetics of methanogenesis will likely be limited by H2 generation. We expect that the bioavailability of H2 (and thus potential of microbial methanogenesis) will be greatest in depleted hydrocarbon fields and least within saline aquifers. We propose that additional integrated monitoring requirements are needed for CO2 storage to trace any biogeochemical processes including baseline, temporal, and spatial studies. Finally, we suggest areas where further research should be targeted in order to fully understand microbial methanogenesis in CO2 storage sites and its potential impact.

Kilometer-scale Δ13CH3D profiles distinguish end-member mixing from methane production in deep marine sediments

Methane stored in marine sediments can form by microbial and thermal decomposition of organic matter. Identifying the source of methane allows us to assess the potential of natural gas reservoirs and the limits of subsurface microbial life. However, such assessments are complicated by the burial and transport of methane, which can produce mixtures from multiple sources. We measured the abundances of stable isotopes (13C/12C and D/H), clumped isotopologue 13CH3D, and n-alkanes (C1/C2+3, methane over ethane plus propane) for gas samples collected by mud-logging to investigate how 13CH3D can be used to constrain sources of methane. Two kilometer-scale depth profiles representing the transition between microbial and thermal methanogenic zones were analyzed from the northeastern Gulf of Mexico and the western Black Sea. We found that Δ13CH3D values of methane do not follow conservative two-component mixing between shallow microbial methane and deep thermogenic methane transported by advection. Rather, methane isotopologues indicate re-equilibration along geothermal gradients following burial, which continues up to apparent temperatures of 100 ± 15 °C. The re-equilibration is likely microbially catalyzed, although this apparent temperature is ca. 20 °C higher than the putative upper-temperature limit of microbial methanogenesis in marine sediments. Above 150 °C, methane isotopologues are expected to equilibrate along geothermal gradients because the rate of abiotic D/H exchange becomes comparable to that of temperature increase with burial. This study provides novel kilometer-scale profiles of clumped methane isotopologues as a means to trace the upper-temperature limits of microbial activity in hydrocarbon-rich marine sedimentary environments.

Association of distinct microbial signatures with premalignant colorectal adenomas

Environmental exposures are a major risk factor for developing colorectal cancer, and the gut microbiome may serve as an integrator of such environmental risk. To study the microbiome associated with premalignant colon lesions, such as tubular adenomas (TAs) and sessile serrated adenomas (SSAs), we profiled stool samples from 971 participants undergoing colonoscopy and paired these data with dietary and medication history. The microbial signatures associated with either SSA or TA are distinct. SSA associates with multiple microbial antioxidant defense systems, whereas TA associates with a depletion of microbial methanogenesis and mevalonate metabolism. Environmental factors, such as diet and medications, link with the majority of identified microbial species. Mediation analyses found that Flavonifractor plautii and Bacteroides stercoris transmit the protective or carcinogenic effects of these factors to early carcinogenesis. Our findings suggest that the unique dependencies of each premalignant lesion may be exploited therapeutically or through dietary intervention.

A joint role of iron oxide and temperature for methane production and methanogenic community in paddy soils

Microbial methanogenesis in paddy soils contributes approximately one-fifth of global anthropogenic methane (CH4) release, creating severe negative climate feedback. The dynamics of iron oxides in flooded paddy fields, as well as temperature changes, have an impact on CH4 production. However, the relationship between the two, as well as their interactive mechanisms in influencing CH4 production and microbial communities in paddy soils, is not yet clear. Therefore, we investigated the interactive effects of temperature (15, 25 and 35 °C) and iron oxide (ferrihydrite) on CH4 production and methanogenic community structure in two Chinese paddy soils, one subtropical and one temperate. We characterized shifts in microbial communities using high-throughput sequencing of bacteria, archaea and methanogenic mcrA genes following an anaerobic incubation for 90 days. Our results showed that temperature significantly promoted Fe reduction in paddy soils, and both together regulated CH4 production by reducing the number of methanogens. Additionally, the temperature sensitivity of methanogenesis was higher in the temperate than in the subtropical paddy soil. We also demonstrated that ferrihydrite can inhibit methanogenesis by reducing the relative abundance of Methanosarcinales and altering the community patterns of methanogens in these paddy soils. Likewise, increases in temperature changes the relative abundance of Methanosarcinales and Methanobacteriales, promoting methanogenesis. Overall, our results provide new insights into the role of iron oxides and temperature in regulating greenhouse gas emissions from paddy soils.

A conceptual model for the Tufiño-Chiles-Cerro Negro (TCCN) geothermal system (Ecuador-Colombia): New insights into geothermal exploration from chemical and isotopic composition of hydrothermal fluids

The Tufiño-Chiles-Cerro Negro (TCCN), located on the border between Colombia and Ecuador, is one of the most promising geothermal systems in the Andean Northern Volcanic Zone, presenting an estimated geothermal potential of 130–138 MWe associated with two reservoirs located at 500–1000 m, and > 1500 m of depth, respectively. In this work, we present a geochemical conceptual model for TCCN to explore the physicochemical conditions acting on the reservoir, based on a comprehensive dataset of water, gas geochemistry, and stable isotopes of the hydrothermal manifestations of the geothermal system, integrated with previously published data. Four new water samples and two bubbling gas samples were collected from the TCCN area during fieldwork in January 2015. Waters from TCCN, which show temperatures up to 54.7 °C, are near-neutral to slightly acidic and have variable TDS values (687 to 3095 mg/L) that generally increase at increasing temperature. All the samples fall far from the chloride-mature waters field, being characterised by SO42− or HCO3−dominated composition, suggesting steam-heated and peripheral water characteristics. The 3He/4He ratios (R/Ra) of gas samples range between 2.4 and 4.6, indicating an important mantle He contribution diluted by the addition of radiogenic and atmospheric 4He. Based on their CO2/3He and δ13C–CO2 ratios, gas samples show a carbon origin prevailing from subducted limestone, likely connected to the presence of the subducting Carnegie ridge. A mixing between a thermogenic and biogenic origin for methane is suggested, consistent with the dominant inputs from microbial methanogenesis and thermal maturation of sedimentary organic matter in the TCCN system. The high δ34S-H2S values of gas (+6.7 ‰ and 10.7 ‰ vs. V-CDT) and δ34S-SO4 of water (+19.2 ‰ and + 19.3 ‰ vs. V-CDT) samples coupled with the high values of S/3He indicate that the sulphur signature could be mostly controlled by the incorporation of subducted sulphate. Gas geothermometric estimations in the CO2-H2 system indicate a temperature between 245 and 250 °C for the geothermal reservoir. The gas samples appear to be in disequilibrium concerning the redox conditions related to the FeO/FeO1.5 buffer typical for hydrothermal systems, implying that these samples represent immature vapours. This could be explained by the input of magmatic fluids into the roots of the TCCN geothermal systems, possibly related to the seismic crisis linked to the unrest of the volcanic complex at the end of 2014.

Something old, something new, something borrowed, something blue: the anaerobic microbial ancestry of aerobic respiration.

Aerobic respiration evolved by bricolage, with modules cobbled together as microbial biochemistry coevolved with Earth's geochemistry. The mitochondrial electron transport chain represents a patchwork of respiratory modules inherited from microbial methanogenesis, iron oxidation, anoxygenic photosynthesis, and denitrification pathways, and preserves a biochemical record of Earth's redox environment over its four-billion-year history. Imprints of the anoxic early Earth are recognizable in Complex I's numerous iron-sulfur cofactors and vestigial binding sites for ferredoxin, nickel-iron, and molybdopterin, whereas the more recent advent of oxygen as a terminal electron acceptor necessitated use of heme and copper cofactors by Complex IV. Bricolage of respiratory complexes resulted in supercomplexes for improved electron transfer efficiency in some bacteria and archaea, and in many eukaryotes. Accessory subunits evolved to wrap mitochondrial supercomplexes for improved assembly and stability. Environmental microbes with 'fossil' proteins that are similar to ancestral forms of the respiratory complexes deserve further scrutiny and may reveal new insights on the evolution of aerobic respiration.

Biogeochemical Activity of Methane-Related Microbial Communities in Bottom Sediments of Cold Seeps of the Laptev Sea

Bottom sediments at methane discharge sites of the Laptev Sea shelf were investigated. The rates of microbial methanogenesis and methane oxidation were measured, and the communities responsible for these processes were analyzed. Methane content in the sediments varied from 0.9 to 37 µmol CH4 dm-3. Methane carbon isotopic composition (δ13C-CH4) varied from -98.9 to -77.6‱, indicating its biogenic origin. The rates of hydrogenotrophic methanogenesis were low (0.4-5.0 nmol dm-3 day-1). Methane oxidation rates varied from 0.4 to 1.2 µmol dm-3 day-1 at the seep stations. Four lineages of anaerobic methanotrophic archaea (ANME) (1, 2a-2b, 2c, and 3) were found in the deeper sediments at the seep stations along with sulfate-reducing Desulfobacteriota. The ANME-2a-2b clade was predominant among ANME. Aerobic ammonium-oxidizing Crenarchaeota (family Nitrosopumilaceae) predominated in the upper sediments along with heterotrophic Actinobacteriota and Bacteroidota, and mehtanotrophs of the classes Alphaproteobacteria (Methyloceanibacter) and Gammaproteobacteria (families Methylophilaceae and Methylomonadaceae). Members of the genera Sulfurovum and Sulfurimonas occurred in the sediments of the seep stations. Mehtanotrophs of the classes Alphaproteobacteria (Methyloceanibacter) and Gammaproteobacteria (families Methylophilaceae and Methylomonadaceae) occurred in the sediments of all stations. The microbial community composition was similar to that of methane seep sediments from geographically remote areas of the global ocean.