Microbial Kinetics Research Articles

Pulsed light treatment of table grape juice: Influence of matrix pH on microbial and enzyme inactivation kinetics

The influence of pulsed light (PL) treatment and matrix pH was tested in the case of green table grape juice. Escherichia coli, Listeria monocytogenes, and Saccharomyces cerevisiae were inoculated into the table grape juices with matrix pH levels of 3.0, 3.5, and 4.0. Further, the juice was treated at 378–3186 J/cm2. The Weibull model better explained the microbial inactivation data. The shape parameters (β) from the Weibull model for E. coli, L. monocytogenes, and S. cerevisiae are 0.95 ± 0.02, 0.55 ± 0.04, and 0.40 ± 0.03, respectively. A lesser δ-value (scale parameter in J/cm2) was obtained for each microorganism at a lower pH. PL exposure resulted in a lack of cell visibility, cell wall, and cell membrane disruption in bacterial cells. The inactivation of polyphenol oxidase (PPO), peroxidase (POD), and pectin methyl esterase (PME) was studied at an elevated fluence level of 1152–3186 J/cm2. Enzymes in the juice were less sensitive to PL than microorganisms. The enzyme inactivation of >90% was achieved at 3186 J/cm2; thus, the juice was adjudged as the microbially safe and enzymatically stable pasteurized sample. The PL-induced enzyme inactivation followed nth-order kinetics with an inactivation order (n) of 1.1, 1.15, and 0.85 for PPO, POD, and PME, respectively. The enzyme inactivation rate was higher at a low pH. The PL-treated pasteurized juice at pH 3.5 showed the highest sensory acceptance (7.4 out of 9), with a minimal color change, a 7% loss in total phenolics, and a 12% loss in vitamin C and flavonoids.

Coupled model for microbial growth and phase mass transfer in pressurized batch reactors in the context of underground hydrogen storage.

A rising interest in a strong hydrogen economy as a part of the future net-zero economy results in an increasing necessity to store hydrogen as a raw material or an energy carrier. Experience and studies show that storing hydrogen in deep underground sites could enable microbial conversion of hydrogen. To predict and examine the loss of hydrogen, laboratory studies, and analysis are essential. A growth model is required to interpret batch or chemostat experiments. With this model, the parameters of microbial growth, and the conversion of hydrogen can be specified. This study presents experiments with methanogens and a hydrogen/carbon dioxide gas mixture performed in batch reactors. Further, the microbial growth was modeled by a double Monod model with hydrogen and carbon dioxide as the limiting substrates. As the amount of carbon dioxide dissolved in the water phase can not be neglected, both phases were considered in the proposed model. The mass-transfer rate between the gas and water phase was implemented by a linear relation including the concentrations in both phases and the mass-transfer coefficient. With the resulting coupled model, it was possible to match the pressure behavior in the reactor and conclude the microbial growth kinetics. Two types of methanogenic species were tested to validate the model. The mass transfer coefficient proves to impact the growth behavior in porous media. The mathematical model and experimental data are necessary to determine the growth rate and yield coefficient.

Investigating the effect of electrosprayed alginate/PVA beads size on the microbial growth kinetics: Phenol biodegradation through immobilized activated sludge

The presence of cyclic organic compounds, including phenol, in the wastewater of many industries has made phenol removal an important issue. Meanwhile, the biological methods of removing phenol have attracted the attention of researchers in recent years. Recently, the use of immobilized microbial cells is proposed as a new approach in industrial wastewater treatment. In this research, the aim is to study the effect of immobilized beads size on the phenol biodegradation efficiency and specific microbial growth rate. For this purpose, electrospray technique was used to immobilize activated sludge in hybrid matrix of alginate and polyvinyl alcohol (PVA). The fabricated alginate/PVA beads were characterized using Fourier transform infrared spectroscopy (FTIR). Evaluation of the results related to the free and immobilized cell systems in the shake flask experiments showed that at low phenol concentrations the immobilized cell system had the same performance as the free cell system, while the immobilized cell system at higher concentrations had a better performance in removing phenol so that at a concentration of 2000 mg/L, removal percentage has increased from 15% to 25–34%. On the other hand, in this survey, the kinetic behavior of activated sludge was in good agreement with Haldane's equation. Moreover, the maximum specific growth rate was measured 0.033 and 0.041 (h−1) beside 544 and 636 mg/L substrate inhibition constant, for free and immobilized cell systems, respectively. This result shows that the phenol biodegradation has been improved by using the cell immobilization technique especially with applying the smaller beads, which is due to improved mass transfer and microbial cell protection from harsh environments.

The Effects of Nano Zinc Oxide Shape on Optical Characteristics of Tapioca Starch Films and In Vitro Escherichia coli Microbial Growth Kinetics

The Effects of Nano Zinc Oxide Shape on Optical Characteristics of Tapioca Starch Films and In Vitro Escherichia coli Microbial Growth Kinetics

Effect of Mo2C-functionalized electrode interface on enhancing microbial cathode electrocatalysis: Beyond electrochemical hydrogen evolution

Mo2C has recently been introduced into microbial cathode electrocatalysis due to its well-known catalytic activity for hydrogen evolution reaction (HER), but a low electrode potential (i.e., a high energy input) is required usually. However, in the range of potential where HER cannot occur, its effect on microorganism/cathode interfacial kinetics remains unknown. Herein, an active Mo2C interface is constructed on conventional carbon cloth electrode to investigate its impact on electric-driven fumarate reduction by a typical electroactive microorganism (Shewanella oneidensis MR-1) at a potential of −0.36 V (vs. standard hydrogen electrode) that cannot meet the HER requirement. The Mo2C-functionalized electrode achieves a greatly increased current consumption density of ∼0.041 mA cm−2, about three times that of the control, indicating a faster fumarate reduction rate. This substantially proves that the enhancement of microbial electrocatalytic kinetics at Mo2C-functionalized interface is not confined to the induced hydrogen evolution. By analyzing its interaction with extracellular electron transfer mediators (e.g., c-type cytochromes and riboflavin), a robust inward extracellular electron transfer process based on the rapid electrochemical reaction of riboflavin at the Mo2C-functionalized interface is elaborated. This work provides a new understanding of the mechanism by which the nanostructured Mo2C interface enhances microbial cathode electrocatalysis.

Effect of free nitrous acid on nitritation process: Microbial community, inhibitory kinetics, and functional biomarker

This work comprehensively deciphered the effect of free nitrous acid (FNA) on the microbial community, inhibitory kinetics, and nitrifiers in nitritation process. Nitritation was first successfully achieved through selective inhibition of free ammonia (FA) on nitrite oxidizers (NOB). Then, batch tests clearly showed that FNA significantly inhibits the ammonia oxidation rate (rsu) and the growth rate (μ) of ammonia oxidizers (AOB), which was well described by the Hellinga model (KI = 0.222 mg·L−1). The structural equation model indicated that FNA was significantly and negatively associated with rsu, μ, Nitrosomonas, Commamons, Nitrospira, and Nitrotoga and positively correlated with Paracoccus. Furthermore, Nitrosomonas significantly drove the ammonia utilization and growth of AOB and was identified as the most important functional biomarker indicating the nitritation in response to FNA levels using random forest model. This study provides helpful information on the kinetics of the mechanism underlying the FNA inhibition on nitrification.

Microbial growth kinetics as a method to model and predict the development of starter cultures

A comparative study was conducted on the growth rate of lactic acid bacteria involved in starter cultures for the production of lactic acid products. Based on the data obtained, with respect to the rate of development, it is possible to predict their development as monocultures or as cultures in symbiotic relationship. In order to achieve the set objective, culture of lactic acid microorganisms was carried out in a bioreactor for 24 hours. Data on the rate of development in the different phases, represented by the acid formation curve, are reported for the following strains: Lactobacillus delbrueckii ssp. bulgaricus S22; Streptococcus thermophilus S1; Lacticaseibacillus casei ssp. rhamnosus AS15; Lactobacillus casei ssp. shirota 51C. The conclusions drawn allow the correct and predictable use of the investigated strains of lactic acid bacteria in starter cultures for the production of lactic acid products.

Granular activated carbon stimulated microbial extracellular secretions in anaerobic digesters: An egalitarian act and beyond

Granular activated carbon (GAC) has been widely studied for its roles in improving anaerobic digestion (AD) through its conductive properties in stimulating direct interspecies electron transfer or its surface functional groups in altering redox conditions in AD. In the present study, the impacts of GAC on the biosynthesis of extracellular microbial secretions (e.g., amino acids and vitamins), and the roles of these secretions in AD were investigated. Four continuous laboratory reactors were operated under ambient temperature (20 ± 0.5 °C) conditions, including two up-flow anaerobic sludge blanket (UASB) bioreactors with GAC addition to one of the UASBs; and two anaerobic sequencing batch reactors (ASBRs) each fed with the centrifuged supernatants (to remove suspended biomass and GAC debris) of UASB effluents supplemented with additional carbon source (glucose). Our finding shows that GAC addition stimulated extracellular microbial secretions in UASB, and these secretions, which can work as essential nutrients, enhanced COD removal (from 48 ± 3 % to 60 ± 1 %) and methane production (31 ± 3 % to 47 ± 5 %) in its downstream ASBR. Interestingly, microbial kinetics test showed that extracellular microbial secretions from the GAC-amended UASB improved methane production rate from 72.5 ± 1.5 to 105.6 ± 1.2 mg CH4-COD/g VSS/d without dramatic microbial community shift. We conclude that the impact of GAC on AD does not only rely on the direct contact of microorganisms and GAC materials, and the GAC-stimulated microbial extracellular secretions represent an important mechanism in conductive material amended AD.

Accurate prediction of salmon freshness under temperature fluctuations using the convolutional neural network long short-term memory model

Freshness prediction was a research hotspot in the field of food science. The current microbial kinetic equations could predict the freshness under certain fixed temperature conditions, but they were no longer effective when the temperature was fluctuated. To solve this problem, this paper used deep learning techniques to mine the inherent relation of variable temperature during storage and proposed a novel model named CNN_LSTM (convolutional neural network_ long short-term memory). The model didn't need to fit the parameters of a fixed equation, and it had the advantage of predicting freshness within a range of temperature fluctuations. The results showed that CNN_LSTM could get better prediction results than classic microbial kinetics methods such as logistic equation, Gompertz equation and Arhenius equation under fixed temperature conditions. When the temperature fluctuated, the model could still accurately predict total viable counts (TVC) under variable temperature conditions, with the determination coefficient (R 2 ) greater than 0.95 and the root mean square error (RMSE) less than 0.2. In addition, the model had the potential to predict freshness under different change factors besides temperature fluctuations, which provided a new prospect for freshness prediction. • The salmon freshness under temperature fluctuations could be accurately predicted. • The CNN_LSTM model was proposed to improve the prediction performance compared to microbial kinetic equations. • The CNN_LSTM model could mine the inherent relation of variable temperature during storage.

Corrigendum to “Extending melengestrol acetate feeding from 14 to 18 days during an estrus synchronization and artificial insemination protocol for March-calving beef heifers” (Appl. Anim. Sci. 38:499–504)

The discovery that approximately 20% of natural gas is microbial in origin has elevated interest in microbially enhanced coalbed methane (MECoM). However, a rational approach to exploit this calls for the development of reservoir scale models that include the effect of microbial activity. To address this, we have developed a multiscale, multiphase, multicomponent reactive-transport model for the production of microbially enhanced coalbed methane (MECoM) that includes microbial kinetics. The model is used to evaluate field scale strategies for commercial MECoM production. Optimization studies are also conducted over a range of compositions of the injected nutrient and injector bottomhole pressures. In order to account for the effect of uncertainty in the model parameters, mean-variance robust optimization is performed, allowing a trade-off between performance and robustness. Proxy modeling is performed in a multivariate polynomial chaos expansion framework to evaluate the cost functions involved in the robust optimization and sparse expansions are constructed in order to deal with issues related to high dimensionality. The optimization strategy is tested for different trade-offs between robustness and performance. It is observed that for the given case, the location of robust optimal points does not vary unless only robustness is included in the objective function, and nominal performance is not.

Enhanced triclosan biodegradation by a biphasic bioreactor

Triclosan (TCS), an antiseptic agent that facilitates the formation of microbial resistances, has been widely used and is therefore ubiquitously detectable in wastewater. However, structure and low water solubility limit both microbial transformation kinetic and removal efficiency of TCS. Therefore, the use of solubilizers or non-aqueous phases (NAP) appears to be a suitable approach for rapid, complete, and cost-effective treatment of highly contaminated TCS point sources such as sports clubs, hospitals, industrial wastewater treatment plants or synthesis effluents without dilution effects.The mixed culture TCSmix100 previously isolated and characterized, and able to completely mineralize TCS at stoichiometric chloride release, was investigated in presence or absence of solubilizers in lab-scale well stirred batch reactors. While TCS conversion was limited in solubilizer-free tests due to limited solubility of TCS crystals within the aqueous phase, solubilizers enhanced water solubility, mass transport and microbial kinetics. Thus, TCS transformation rate at initial 1.45 g TCS L−1 was further increased from a high level of 155–172 mg L−1d−1 without solubilizers to 399 mg L−1d−1 or to 888 mg L−1 d-1 providing β-pinene or α-pinene as NAPs, i.e., by a factor of 2.3–5.2, exceeding kinetic parameters of other strains described in literature by at least two orders of magnitude. These results clearly demonstrate the high TCS mineralization capacity of this biphasic treatment technologies and its applicability in treatment of highly contaminated TCS point-sources to eliminate recalcitrant contaminants at high levels before getting diluted.

Enhancement of chlorhexidine activity against planktonic and biofilm forms of oral streptococci by two Croton spp. essential oils from the Caatinga biome

This work investigates the ability of two Croton spp. essential oils (EO) to enhance chlorhexidine (CHX) activity against oral streptococci. EO’s chemical composition of Croton argyrophyllus and C. pluriglandulosus was determined by GC-MS/FID. The microbial growth kinetics and minimum inhibitory concentration (MIC) of EOs and CHX were determined, followed by their synergism against S. mutans UA159 and ATCC 25175, S. salivarius ATCC 7073 and S. sp. ATCC 15300. The microplate-based method was used to determine the EO/CHX activity against 24-h-old biofilms. The major compounds were α-pinene (54.74%) and bicyclogermacrene (16.08%) for EOAr and 1,8-cineole (17.41%), methyleugenol (16.06%) and elemicin (15.99%) for EOPg. Both EO had MIC around 16,000 µg/mL. EOs/CHX presented a synergistic effect against most strains (FICi from 0.133 to 0.375), and OE/CHX-treated biofilms showed a reduction in biomass and cell viability compared to CHX, only (p < 0.01). Thus, the EOs works as natural adjuvants for CHX.

Nipa Sap Can Be Both Carbon and Nutrient Source for Acetic Acid Production by Moorella thermoacetica (f. Clostridium thermoaceticum) and Reduced Minimal Media Supplements

Nipa sap is an excellent microbial nutrient and carbon source since it contains essential minerals and vitamins, in addition to sugars. In this study, nipa sap was successfully fermented to acetic acid by the industrially important Moorella thermoacetica without additional trace metals, without inorganics, or without yeast extract. Although microbial growth kinetics differed from one nutrient condition to another, acetic acid concentrations obtained without trace metals, without inorganics, and without yeast extract supplements were in the same range as that with full nutrient, confirming that nipa sap is a good nutrient source for M. thermoacetica. Fermentations in vials and fermenters showed comparable acetic acid production trends but acetic acid concentrations were higher in fermenters. Upon economic analysis, it was found that the most profitable nutrient condition was without yeast extract. It reduced the cost of culture medium from $1.7 to only $0.3/L, given that yeast extract costs $281/kg, while nipa sap can be available from $0.08/kg. Minimal medium instead of the traditional complex nutrient simplifies the process. This work also opens opportunities for profitable anaerobic co-digestion and co-fermentation of nipa sap with other biomass resources where nipa sap will serve as an inexpensive nutrient source and substrate.

Transport-limited reactions in microbial systems.

Predicting microbial metabolic rates and emergent biogeochemical fluxes remains challenging due to the many unknown population dynamical, physiological and reaction-kinetic parameters and uncertainties in species composition. Here, we show that the need for these parameters can be eliminated when population dynamics and reaction kinetics operate at much shorter time scales than physical mixing processes. Such scenarios are widespread in poorly mixed water columns and sediments. In this 'fast-reaction-transport' (FRT) limit, all that is required for predictions are chemical boundary conditions, the physical mixing processes and reaction stoichiometries, while no knowledge of species composition, physiology or population/reaction kinetic parameters is needed. Using time-series data spanning years 2001-2014 and depths 180-900 m across the permanently anoxic Cariaco Basin, we demonstrate that the FRT approach can accurately predict the dynamics of major electron donors and acceptors (Pearson r ≥ 0.9 in all cases). Hence, many microbial processes in this system are largely transport limited and thus predictable regardless of species composition, population dynamics and kinetics. Our approach enables predictions for many systems in which microbial community dynamics and kinetics are unknown. Our findings also reveal a mechanism for the frequently observed decoupling between function and taxonomy in microbial systems.

Microbial Growth Rate Kinetics in Biogas Production by Anaerobic Digestion of Chicken Manure

Kinetic study of microorganism’s growth in chicken manure (CM) when producing biogas is often studied for scale-up purposes. CM are considered as waste, and can cause serious environmental consequences when not properly disposed. The objective of the study is to know the characteristics of the bioreactor condition or environment responsible for CM degradation and biogas production. Methods involves serial dilution, pour plating, cell count and the determination of Monod parameters. POLYMATH regression results shows that CM of particle density 0.0163 g/cm3 gives a maximum specific growth rate, ?_max of 0.007316 hr^(-1) and half saturation constant, K_s of 3.8×?10?^8mg/l which points to substrate sufficiency for the survival of microorganisms and biogas production.

Salinity and hydraulic retention time induce membrane phospholipid acyl chain remodeling in Halanaerobium congolense WG10 and mixed cultures from hydraulically fractured shale wells.

Bacteria remodel their plasma membrane lipidome to maintain key biophysical attributes in response to ecological disturbances. For Halanaerobium and other anaerobic halotolerant taxa that persist in hydraulically fractured deep subsurface shale reservoirs, salinity, and hydraulic retention time (HRT) are important perturbants of cell membrane structure, yet their effects remain poorly understood. Membrane-linked activities underlie in situ microbial growth kinetics and physiologies which drive biogeochemical reactions in engineered subsurface systems. Hence, we used gas chromatography-mass spectrometry (GC-MS) to investigate the effects of salinity and HRT on the phospholipid fatty acid composition of H. congolense WG10 and mixed enrichment cultures from hydraulically fractured shale wells. We also coupled acyl chain remodeling to membrane mechanics by measuring bilayer elasticity using atomic force microscopy (AFM). For these experiments, cultures were grown in a chemostat vessel operated in continuous flow mode under strict anoxia and constant stirring. Our findings show that salinity and HRT induce significant changes in membrane fatty acid chemistry of H. congolense WG10 in distinct and complementary ways. Notably, under nonoptimal salt concentrations (7% and 20% NaCl), H. congolense WG10 elevates the portion of polyunsaturated fatty acids (PUFAs) in its membrane, and this results in an apparent increase in fluidity (homeoviscous adaptation principle) and thickness. Double bond index (DBI) and mean chain length (MCL) were used as proxies for membrane fluidity and thickness, respectively. These results provide new insight into our understanding of how environmental and engineered factors might disrupt the physical and biogeochemical equilibria of fractured shale by inducing physiologically relevant changes in the membrane fatty acid chemistry of persistent microbial taxa. GRAPHICAL ABSTRACTSalinity significantly alters membrane bilayer fluidity and thickness in Halanaerobium congolense WG10.

Effects of O2/CO2 transmission rate of BOPA/LDPE or PE film on shelf life and quality attributes of fresh-cut cherry radish

This study established models coupling Pseudomonas fluorescens growth, respiration, and dynamic O2 and CO2 change to evaluate effects of O2/CO2 transmission rates (OTR/CTR) on quality attributes of fresh-cut cherry radish (Raphanus sativus L. var. radculus pers) packed in biaxially oriented polyamide/low-density polyethylene (BOPA/LDPE) and polyethylene (PE) films during cold storage. The Baranyi model successfully modeled the growth of P. fluorescens. Microbial growth kinetics, including μmax and λ of P. fluorescens decreased with the increased OTR/CTR level of packaging films. Starting from the 4th day-storage, the respiration rates (RRs) remained unchanged until the end of cold storage, and the plateau of RR increased with the increase in OTR/CTR levels. The O2 content was significantly lower and CO2 content was higher in BOPA/LDPE films with OTR5 and OTR48 compared with that in PE films with high OTR where O2 ingress through permeation kept high and compensated O2 consumed by respiration of fresh-cut cherry radish. The difference in dynamic gas change influenced quality attributes and sensory properties as well. The BOPA/LDPE as a high barrier film extensively maintained color, total soluble solid content, firmness, nutrients and therefore, extended shelf life of cherry radish to 12 d, which was longer than that packed in the PE films (9 d) as low barrier films. The established coupling gas exchange models conjugated to the Baranyi model could be further utilized for predicting dynamic gas change and RR of other types of fresh-cut vegetables where Pseudomonas are dominant for spoilage.

Responses of various carbon to nitrogen ratios to microbial communities, kinetics, and nitrogen metabolic pathways in aerobic granular sludge reactor

The role of different ammonia concentrations (mg N/L) (of 100 (carbon to nitrogen ratio (C/N) = 12; Stage I), 200 (C/N = 6; Stage II), 400 (C/N = 3; Stage III) and 200 (C/N = 6; Stage IV)) in nitrogen metabolic pathways, microbial community, and specific microbial activity were investigated in an aerobic granular sludge reactor. Heterotrophic ammonia oxidizing bacteria (HAOB) showed higher ammonia oxidation rates (AORs) than autotrophic ammonia oxidizing bacteria (AAOB) at higher C/N conditions (Stages I and II). Paracoccus was the dominant HAOB. AAOB, with only 0.2–0.3 % in relative abundance, showed 2.7-fold higher AORs than HAOB at elevated ammonia and free ammonia (FA) concentrations with C/N at 3. Nitrosomonas and a genus in Nitrosomondaceae family were the major AAOB. This study proposed that FA inhibition on heterotrophic bacteria might be the mechanism that contributes to the development of the autotrophic ammonia oxidation pathway and enrichment of AAOB.

Protective effects of whey protein hydrolysate on Bifidobacterium animalis ssp. lactis Probio-M8 during freeze-drying and storage.

We evaluated the potential of whey protein hydrolysate as a lyoprotectant for maintaining the cell viability of Bifidobacterium animalis ssp. lactis Probio-M8 during freeze-drying and subsequent storage. The moisture content and water activity of the lyophilized samples treated by different concentrations of whey protein hydrolysate were ≤5.23 ± 0.33 g/100 g and ≤0.102 ± 0.003, respectively. During storage at 25°C and 30°C, whey protein hydrolysate had a stronger protective effect on B. lactis Probio-M8 than the same concentration of whey protein. Using the Excel tool GinaFit, we estimated the microbial inactivation kinetics during storage. Whey protein hydrolysate reduced cell damage caused by an increase in temperature. Whey protein hydrolysate could protect cells by increasing the osmotic pressure as a compatible solute. Whey protein hydrolysate improved cell membrane integrity and reduced the amounts of reactive oxygen species and malondialdehyde produced. The findings indicated that whey protein hydrolysate was a novel antioxidant lyoprotectant that could protect probiotics during freeze-drying and storage.

Novel pulsed infrared radiation: Effect on microbial, chemical and sensory properties of saffron (Crocus sativus L.).

In this study, the effect of pulsed infrared (PIR) irradiation on saffron microbial, chemical and sensory properties were evaluated. The PIR power (250, 350 and 450 W), the distance of sample with irradiation source (10, 20 and 30 cm), irradiation time (0-20 min) and PIR pulse (1, 2 and 3 pulse/s) were investigated. Decontamination of total bacteria and total mould and yeast flora and microbial inactivation kinetics were determined. Saffron quality by FTIR and HPLC and sensory attributes were also measured. The highest reduction of the total bacterial count (2.203 log10 CFU per g) and total mould and yeast counts (2.194 log10 CFU per g) were obtained in Sargol Negin saffron at 350 W PIR power, 10cm distance, 1.5min treatment time and 3 pulse/s. The Double Weibull model is the best-fit model for the prediction of the microbial population. Until now, there have been no reports of application for PIR in food processing and decontamination. According to the results, it can be concluded that PIR can be used as a safe method of saffron processing. Utilization of a proper decontamination method for spices especially saffron as the most expensive agricultural product is challengeable. It is recommended to use the PIR method for food processing because due to the reduction of microbial population, it can maintain foodstuff quality at an acceptable level.