Microbial Dissolved Organic Matter Research Articles

Micro-biological degradation and transformation of dissolved organic matter following continuous cropping of tobacco.

In recent years, the problems associated with continuous cropping (CC) that cause soil degradation have become increasingly serious. As a key soil quality property, dissolved organic matter (DOM) affects the circulation of carbon and nutrients and the composition of bacterial communities in soil. However, research on the changes in the molecular composition of DOM after CC is limited. In this study, the soil chemical properties, DOM chemical diversity, bacterial community structure, and their interactions are explored in the soil samples from different CC years (CC1Y, CC3Y, CC5Y, and CC7Y) of tobacco. With increasing CC year of tobacco, most of the soil chemical properties, such as total carbon, total nitrogen and organic matter, decreased significantly, while dissolved organic carbon first decreased and then increased. Likewise, the trends of DOM composition differed with changing duration of CC, such as the tannin compounds decreased from 18.13 to 13.95%, aliphatic/proteins increased from 2.73 to 8.85%. After 7 years of CC, the soil preferentially produced compounds with either high H/C ratios (H/C > 1.5), including carbohydrates, lipids, and aliphatic/proteins, or low O/C ratios (O/C < 0.1), such as unsaturated hydrocarbons. Furthermore, core microorganisms, including Nocardioides, wb1-P19, Aquabacterium, Methylobacter, and Thiobacillus, were identified. Network analysis further indicated that in response to CC, Methylobacter and Thiobacillus were correlated with the microbial degradation and transformation of DOM. These findings will improve our understanding of the interactions between microbial community and DOM in continuous cropping soil.

Elevated methane alters dissolved organic matter composition in the Arctic Ocean cold seeps

Cold seeps release methane (CH4) from the seafloor to the water column, which fuels microbially mediated aerobic methane oxidation (MOx). Methane-oxidising bacteria (MOB) utilise excess methane, and the MOB biomass serves as a carbon source in the food web. Yet, it remains unclear if and how MOx modifies the composition of dissolved organic matter (DOM) in cold seeps. We investigated MOx rates, DOM compositions and the microbial community during ex-situ incubations of seawater collected from a cold seep site at Norskebanken (north of the Svalbard archipelago) in the Arctic Ocean. Samples were incubated with and without methane amendments. Samples amended with methane (∼1 µM final concentration) showed elevated rates of MOx in both seep and non-seep incubations. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) analyses showed that the number of DOM formulas (i.e., molecular diversity) increased by up to 39% in these incubations. In contrast, the number of formulas decreased by 20% in samples not amended with methane, both from non-seep and seep locations. DOM composition was thus altered towards a more diverse and heterogeneous composition along with elevated methanotrophic activity in methane-amended conditions. In addition to microbial DOM production, abating microbial diversity indicates that elevated DOM diversity was potentially related to grazing pressure on bacteria. The diversity of DOM constituents, therefore, likely increased with the variety of decaying cells contributing to DOM production. Furthermore, based on a principal coordinate analysis, we show that the final DOM composition of non-seep samples amended with methane became more resemblant to that of seep samples. This suggests that methane intrusions will affect water column DOM dynamics similarly, irrespective of the water column’s methane history.

Effect of experimental warming on dissolved organic matter and bacterial diversity in a forest swamp soil

Forest swamp ecosystems play an important role in the global carbon cycle, yet they are often overlooked. With global climate warming, it is inevitable that it will impact the relationship between soil microorganisms and organic matter. Dissolved organic matter (DOM) in the soil environment is extremely sensitive to environmental changes. Understanding the effects of climate change on DOM and microorganisms is crucial for assessing the stability of carbon (C) in forest swamp soils. Therefore, we conducted a 142-day laboratory warming incubation experiment (control: 10 °C, and warming: 20 °C) to investigate the response of forest swamp soil microbial and DOM properties to warming. Excitation-emission matrix (EEM) fluorescence spectroscopy was used to explore the changes in different material compositions of DOM over time at different incubation temperatures, and high-throughput sequencing was used to investigate the changes in soil bacteria. The DOM content (dissolved organic C, DOC) and the degree of humification index (HIX) increased with an increase in incubation time under warming conditions (p < 0.05). In contrast, microbial humic substances (C3) decreased with increasing time. Long-term warming has separated bacterial communities and gradually tightened the degree of connectivity between bacterial networks. The degree of soil humification (Mantel test r = 0.58, p < 0.01) and DOC (r = 0.21, p < 0.05) were the most critical indicators that changed the diversity of the bacterial community. Our findings suggest a degree of interaction between changes in forest swamp soil microbial communities and DOM under warming conditions. The results of this study contribute to our understanding of changes in DOM fluorescence indices in forest swamp soils under the influence of climate change and their associated microbial mechanisms.

Vertical connectivity of microbiome and metabolome reveals depth-dependent variations across a deep cold-seep water column

Deciphering the vertical connectivity of oceanic microbiome and metabolome is crucial for understanding the carbon sequestration and achieving the carbon neutrality. However, we lack a systematic view of the interplay among particle transport, microbial community, and metabolic trait across depths. Through integrating the biogeochemical, microbial, and metabolic characteristics of a deep cold-seep water column (∼1989 m), we find the altered connectivity of microbial community and dissolved organic matter (DOM) across depths. Both the microbial communities (bacteria and protists) and DOM show a clear compositional connectivity from surface to the depth of 1000 m, highlighting the controls of sinking particle over microbial connectivity from the epipelagic to mesopelagic zone. However, due to the biological migration and ocean mixing, the fecal-associated bacteria and protistan consumers unexpectedly emerge and the degradation index of DOM substantially alters around 1000–1200 m. Collectively, we unveil the significance of multi-faceted particle dispersion, which supports the connectivity and variability of deep ocean microbial communities.

Anthropogenic land uses influence stream dissolved organic matter quality more than decomposition rates and macroinvertebrate diversity

In the era of the Anthropocene, streams and rivers are among the most heavily impacted ecosystems due to the influence of catchment land use on stream water quality and ecological condition. In practice, structural and functional indicators collected by biomonitoring programs are underused and thus limited in their ability to offer practical insight into functional-based restoration approaches. Here we applied a novel combination of indicators—cotton strip decomposition, benthic invertebrate sampling together with dissolved organic matter (DOM) composition — to determine if streams highly impacted by urbanized and agricultural land use across Windsor-Essex (southwestern Ontario, Canada) were consistent across season, anthropogenic land use or some combination of both. Overall, our results suggest that urbanized and agricultural streams are indeed degraded at a similar level, with high decomposition rates and low levels of macroinvertebrate diversity. Moreover, DOM quality proved to be the most predictable indicator spatially and seasonally, integrating insights from both decomposition and macroinvertebrate indices. Microbial humic-like DOM correlated positively with decomposition rates, and negatively with invertebrate species richness. Our findings show that functional changes in stream ecological condition can be effectively tracked by structural indicators, namely DOM composition. DOM offers a cost-effective approach to assessing ecosystem health and should be explored as a reliable indicator in monitoring programs and to inform functional-based indicators in ecosystem restoration.

Mechanisms shaping dissolved organic matter and microbial community in lake ecosystems

Lakes are active components of the global carbon cycle and host a range of processes that degrade and modify dissolved organic matter (DOM). Through the degradation of DOM molecules and the synthesis of new compounds, microbes in aquatic environments strongly and continuously influence chemodiversity, which can feedback to influence microbial diversity. Developing a better understanding of the biodiversity patterns that emerge along spatial and environmental gradients is one of the key objectives of community ecology. A changing climate may affect ecological feedback, including those that affect microbial communities. To maintain the function of a lake ecosystem and predict carbon cycling in the environment, it is increasingly important to understand the coupling between microbial and DOM diversity. To unravel the biotic and abiotic mechanisms that control the structure and patterns of DOM and microbial communities in lakes, we combined high-throughput sequencing and ultra-high resolution mass spectrometry together with a null modeling approach. The advantage of null models is their ability to evaluate the relative influences of stochastic and deterministic assembly processes in both DOM and microbial community assemblages. The present study includes spatiotemporal signatures of DOM and the microbial community in six temperate lakes contrasting continental and Mediterranean climates during the productive season. Different environmental conditions and nutrient sources characterized the studied lakes. Our results have shown high covariance between molecular-level DOM diversity and the diversity of individual microbial communities especially with diversity of microeukaryotes and free-living bacteria indicating their dynamic feedback. We found that the differences between lakes and climatic regions were mainly reflected in the diversity of DOM at the molecular formula-level and the microeukaryota community. Furthermore, using null models the DOM assembly was governed by deterministic variable selection operating consistently and strongly within and among lakes. In contrast, microbial community assembly processes were highly variable across lakes with different trophic status and climatic regions. Difference in the processes governing DOM and microbial composition does not indicate weak coupling between these components, rather it suggests that distinct factors may be influencing microbial communities and DOM assemblages separately. Further understanding of the DOM-microbe coupling (or lack thereof) is key to formulating predictive models of future lake ecology and function.

Coupling effect of DOM and microbe on arsenic speciation and bioavailability in tailings soil after the addition of different biologically stabilized sludges

Dissolved organic matter (DOM) and microbes co-mediate the transformation of heavy metals in soil. However, few previous studies have investigated the effects of interaction between DOM and microbes on the transformation and bioavailability of heavy metals in tailings soil at the molecular level after the addition of organic wastes. This study used co-occurrence network analysis based on Fourier-transform ion cyclone resonance mass spectrometry and high-throughput sequencing to investigate the molecular mechanisms of different bio-stabilized sludge addition on arsenic fraction transformation and bioavailability in tailings soil. It was found that sludge amendments decreased the arsenic bioavailable fraction from 3.62% to 1.74% and 1.68% and promoted humification of DOM in soil. The extra inorganic salt ions introduced with sludge desorb the adsorbed As(V) into soil solution. Specifically, bio-stabilized sludge increased the contents of labile compounds that provided nutrients for microbial metabolism and shaped the microbial community composition into a more copiotrophic state, which increased the abundance of As(V)-reducing bacteria and then converted the As(V) into As(III) and precipitated as As2S3. This work innovatively explores the transformation mechanisms of As fractions through the perspectives of microbial community and DOM molecular characterization, providing an important basis for the remediation of As-contaminated soil using biosolids.

Rhizosphere effect on the relationship between dissolved organic matter and functional genes in contaminated soil

Arsenic contamination in a mining area is a potential threat to the local population. In the context of one-health, biological pollution in contaminated soil should be known and understandable. This study was conducted to clarify the effects of amendments on arsenic species and potential threat factors (e.g., arsenic-related genes (AMGs), antibiotic resistance genes (ARGs) and heavy-metal resistance genes (MRGs)). Ten groups (control (CK), T1, T2, T3, T4, T5, T6, T7, T8, and T9) were set up by adding different ratio of organic fertilizer, biochar, hydroxyapatite and plant ash. The maize crop was grown in each treatment. Compared with CK, the bioavailability of arsenic was reduced by 16.2%–71.8% in the rhizosphere soil treatments, and 22.4%–69.2% in the bulk soil treatments, except for T8. The component 2 (C2), component 3 (C3) and component 5 (C5) of dissolved organic matter (DOM) increased by 22.6%–72.6%, 16.8%–38.1%, 18.4%–37.1%, respectively, relative to CK in rhizosphere soil. A total of 17 AMGs, 713 AGRs and 492 MRGs were detected in remediated soil. The humidification of DOM might directly correlate with MRGs in both soils, while it was influenced directly on ARGs in bulk soil. This may be caused by the rhizosphere effect, which affects the interaction between microbial functional genes and DOM. These findings provide a theoretical basis for regulating soil ecosystem function from the perspective of arsenic contaminated soil.

Interactions between white and black carbon in water: A case study of concurrent aging of microplastics and biochar

Microplastics and biochar, as particulate matter that is prevalent in the water environment, will inevitably encounter and interact with each other during environmental aging. The potential interaction of microplastics and biochar, and the associated impact on their environmental behavior remains largely unknown. In this study, we exposed microplastics and biochar concurrently to ultraviolet light to mimic the aging process, investigated the release and fluorescence characteristics of dissolved organic matter (DOM) in water, and analyzed the effects of co-existing microplastics and biochar on their sorption of organic contaminants. We demonstrate that early-stage interactions of microplastics and biochar could entangle to promote the release of DOM from biochar, while their long-term interactions after light irradiation resulted in the sorption of hydrophobic and small molecules of microbial byproduct-like DOM. Simultaneously, early-stage interactions of microplastics and biochar showed a promotion for sorption of organic contaminants with an increase of 5.3–17.7%. After aging, however, long-term interactions between microplastics and biochar made it no longer promote the sorption of organic contaminants due to the influence of heterogeneous aggregation. Our results provide new insights into the time-dependent interactions between microplastics and biochar and highlight the need to incorporate their interactions into future environmental risk assessments for microplastics in the water environment.

Spatial variation and relationship between soil dissolved organic matter and bacterial community in urban greenspaces

Large-scale investigations of soil dissolved organic matter (DOM) and the relationship between bacterial diversity and DOM with climatic gradients are important to reveal the influence of climatic factors on soil DOM. The objectives of this study were to (1) investigate the distribution pattern of DOM at a large scale, (2) investigate the effects of climate change on DOM components and microbial communities, and (3) investigate the relationship between microbial communities and DOM components. This study involved the collection of 54 urban greenspaces samples from five climate zones in mainland China and utilization of FT-ICR-MS and 16S rRNA sequencing techniques to reveal the relationship between microbial communities and DOM. Our results showed that the DOM in soil was DOM inated by lignins, followed by proteins, unsaturated hydrocarbons and lipids. Structural equation modeling (SEM) indicated that lignins and proteins shared a negative response pattern with mean annual precipitation (MAP), while lipids and tannins showed a positive correlation with MAP. The differences in bacterial community composition among different climatic zones were not significant, and the DOM inant bacteria in the soil were Proteobacteria, followed by Acidobacteria and Actinobacteria. Bacterial diversity was highest in the subtropical monsoon climate, lowest in the tropical monsoon climate. In addition, SEM indicated that there was a significant correlation between the composition and diversity of DOM and the diversity and abundance of bacteria. Our results provided a deeper understanding of the impact of climatic factors on DOM components and the relationship between bacterial diversity and DOM in urban greenspaces.Graphical

Characterization of dissolved organic matter content, composition, and source during spring algal bloom in tributaries of the Three Gorges Reservoir

Dissolved organic matter (DOM) is a key component of aquatic ecosystem function and biogeochemical processes. The characteristics of DOM in tributaries of the Three Gorges Reservoir (TGR) during the severe spring algal bloom period and their relationship with algal growth are unclear. In this study, the content, composition, and source of DOM in the Pengxi River (PXR) and Ruxi River (RXR) exhibiting typical TGR bloom problems were analyzed using various physicochemical indexes, carbon isotopes, fatty acids, and metagenomics. The results showed that chlorophyll a content increased with rising DOM concentration in the PXR and RXR. The dissolved organic carbon (DOC) and chromophoric dissolved organic matter (CDOM) contents in the two rivers were 4.656–16.560 mg/L and 14.373–50.848 μg/L, respectively, and increased during the bloom period. Four fluorescent components were identified, namely, two humic-like substances, and two protein-like substances. Proteobacteria, bacteroidetes, and actinobacteria were the greatest contributors to DOM content. The carbon fixation pathway of microorganisms increased the DOC concentration in both rivers during the bloom period. Physicochemical parameters (WT, pH, DO, and PAR) affected the DOM concentration by influencing microbial activity and DOM degradation. DOM in both rivers was derived from allochthonous and autogenous sources. Meanwhile, the DOC content was more strongly correlated with allochthonous sources. These findings might provide essential information for improving water environment management and algal bloom control in the TGR.

Molecular insights into effects of PBAT microplastics on latosol microbial diversity and DOM chemodiversity

The impact of biodegradable microplastics on the microbial community and dissolved organic matter (DOM) in latosol has not been well reported. In this study, an incubation experiment at 25 ºC for 120 days using latosol amended with low (5%) and high (10%) concentrations of polybutylene adipate terephthalate (PBAT) microplastics was carried out to explore the impacts of PBAT microplastics on soil microbial communities and DOM chemodiversity, and the intrinsic interactions between their shifts. The main bacterial and fungal phyla in soil, namely Chloroflexi, Actinobacteria, Chytridiomycota, and Rozellomycota showed a nonlinear relationship with PBAT concentration and played a pivotal role in shaping DOM chemodiversity. A higher decreased levels of lignin-like compounds and increased levels of protein-like and condensed aromatic compounds in the 5% treatment were observed than that in the 10% treatment. Furthermore, a higher increase relative abundance of CHO compounds in the 5% treatment than in the 10% treatment was ascribed to its higher oxidation degree. Co-occurrence network analysis suggested that bacteria formed more complex relationships with DOM molecules than fungi did, indicating their critical roles in DOM transformation. Our study has important implications for understanding the potential influence of biodegradable microplastics on carbon biogeochemical roles in soil.

Changes of Soil Dissolved Organic Matter and Its Relationship with Microbial Community along the Hailuogou Glacier Forefield Chronosequence.

Glacier-retreated areas are ideal areas to study soil biogeochemical processes during vegetation succession, because of the limited effect of other environmental and climatic factors. In this study, the changes of soil dissolved organic matter (DOM) and its relationship with microbial communities along the Hailuogou Glacier forefield chronosequence were investigated. Both microbial diversity and DOM molecular chemodiversity recovered rapidly at the initial stage, indicating the pioneering role of microorganisms in soil formation and development. The chemical stability of soil organic matter enhanced with vegetation succession due to the retaining of compounds with high oxidation state and aromaticity. The molecular composition of DOM affected microbial communities, while microorganisms tended to utilize labile components to form refractory components. This complex relationship network between microorganisms and DOM components played an important role in the development of soil organic matter as well as the formation of stable soil carbon pool in glacier-retreated areas.

Dissolved Organic Matter Sources in High Arsenic Groundwater From a Sand‐Gravel Confined Aquifer

AbstractSources of dissolved organic matter (DOM) triggering arsenic enrichment in deep confined groundwater is a highly debated issue. Along these lines, the spectroscopic and molecular characteristics of DOM were monitored in both shallow unconfined and deep confined groundwater from the Songnen Basin, China. Results demonstrated that deep groundwater with higher dissolved arsenic concentrations was characterized by more abundant labile organic compounds than shallow groundwater. The three‐end‐member mixing model estimated that shallow groundwater had more fraction of surface water, while deep groundwater was primarily recharged by lateral groundwater flow. Groundwater DOM sources were estimated from the fluorescence index (FI) values, which suggests that shallow groundwater DOM was primarily sourced from surface water with stronger terrestrial signatures. However, deep groundwater DOM was mainly sourced from in situ sedimentary organic matter release or by‐products from microbial activity with stronger microbial signatures. Higher values of degradation index (I_deg) indicate that deep groundwater DOM had undergone greater degradation extents than the shallow one. The microbial DOM degradation in anoxic environments mainly occurred via a pathway where more saturated and low‐molecular‐mass compounds were preferentially degraded to produce more mid‐molecular‐mass compounds with unsaturated, aromatic, and microbial signatures. This explained the significant positive correlations between groundwater arsenic concentrations and FI and I_deg values. A stronger DOM degradation state in deep groundwater was conducive to more arsenic enrichment than that in the shallow one. This work successfully identified distinct sources of shallow and deep groundwater DOM, and proposed a paradigm of DOM processing pathways during arsenic enrichment under anoxic environments.

Linking soil microbial community to the chemical composition of dissolved organic matter in a boreal forest during freeze–thaw cycles

Soil dissolved organic matter (DOM) is mainly derived from the microbial degradation of organic matter. Intense freeze–thaw cycles (FTCs) elicited by warming alter the production and consumption of DOM in boreal forest soils, but little is known about the interactions between soil microbial community and DOM chemical composition. In this study, a FTCs incubation experiment was conducted to investigate the association between DOM dynamics and microbial community. DOM fingerprints were characterized using pyrolysis gas chromatography-mass spectrometry (Py-GC/MS) technology, and bacterial and fungal community composition was analyzed using high-throughput sequencing and bioinformatics. Both two and six freeze–thaw cycles (2FTCs and 6FTCs) significantly increased soil dissolved organic carbon (DOC) and NH4+-N contents at 0–10 cm and 50–60 cm depths. FTCs significantly decreased the relative abundance of aromatic components in DOM, whereas increasing the relative abundance of polysaccharides and fatty acid methyl esters (FAMEs) in DOM. The degradation of lignin-derived aromatic compounds was accelerated and microbial-derived components accumulated. Also, bacterial community responded more sensitively to FTCs than fungal community. Significant changes in bacterial community network was observed during FTCs with increased linkages, shortened average path lengths, reduced modularity and relative abundance of dominant phyla, and decreased α diversity. However, FTCs only increased the average path length of soil fungal community. The higher connectivity indicated that FTCs enhanced the interactions between microbial community and DOM chemical components. FTCs led to a shift in bacterial keystone taxa from being present in specific DOM molecules to competing for common substrates. Overall, FTCs tended to activate DOM and increase availability, which could promote DOM turnover and increase soil C stabilization. These findings provide new insights into the molecular mechanisms of DOM dynamics in the boreal forest soils under increased FTCs.

Dissolved organic matter concentration and composition discontinuity at the peat–pool interface in a boreal peatland

Abstract. Pools are common features of peatlands and can represent from 5 % to 50 % of the peatland ecosystem's surface area. Pools play an important role in the peatland carbon cycle by releasing carbon dioxide and methane to the atmosphere. However, the origin of this carbon is not well constrained. A hypothesis is that the majority of the carbon emitted from pools predominantly originates from mineralized allochthonous (i.e., plant-derived) dissolved organic matter (DOM) from peat rather than in situ primary production. To test this hypothesis, this study examined the origin, composition, and degradability of DOM in peat porewater and pools of an ombrotrophic boreal peatland in northeastern Quebec (Canada) for 2 years over the growing season. The temporal evolution of dissolved organic carbon (DOC) concentration, the optical properties, molecular composition (THM-GC-MS), stable isotopic signature (δ13C-DOC), and degradability of DOM were determined. This study demonstrates that DOM, in both peat porewater and pools, presents a diverse composition and constitutes highly dynamic components of peatland ecosystems. The molecular and isotopic analyses showed that DOM in pools was derived from plants. However, DOM compositions in the two environments were markedly different. Peat porewater DOM was more aromatic, with a higher molecular weight and DOC : DON (dissolved organic nitrogen) ratio compared to pools. The temporal dynamics of DOC concentration and DOM composition also differed. In peat porewater, the DOC concentration followed a strong seasonal increase, starting from 9 mg L−1 and reaching a plateau above 20 mg L−1 in summer and autumn. This was explained by seasonal peatland vegetation productivity, which is greater than microbial DOM degradation. In pools, DOC concentration also increased but remained 2 times lower than in the peat porewaters at the end of the growing season (∼ 10 mg L−1). Those differences might be explained by a combination of physical, chemical, and biological factors. The limited hydraulic conductivity in deeper peat horizons and associated DOM residence time might have favored both DOM microbial transformation within the peat and the interaction of DOM aromatic compounds with the peat matrix, explaining part of the shift of DOM compositions between peat porewater and pools. This study did not report any photolability of DOM and only limited microbial degradability. Thus, it is likely that the DOM might have been microbially transformed at the interface between peat and pools. The combination of DOM quantitative and qualitative analyses presented in this study demonstrates that most of the carbon present within and released from the pools originates from peat vegetation. These results demonstrate that pools represent a key component of the peatland ecosystem ecological and biogeochemical functioning.

Temperature enhances the functional diversity of dissolved organic matter utilization by coastal marine bacteria.

Although bulk bacterial metabolism in response to temperature has been determined for different oceanic regions, the impact of temperature on the functional diversity of dissolved organic matter (DOM) utilization has been largely unexplored. Here, we hypothesized that besides modifying the rates of carbon utilization, temperature can also alter the diversity of substrates utilized. The patterns of utilization of 31 model DOM compounds (as represented in Biolog EcoPlate™) by bacterioplankton were assessed using inocula from surface waters of the southern Bay of Biscay continental shelf over 1 year. Bacteria utilized more polymers and carbohydrates in late spring and summer than in winter, likely reflecting changes in substrate availability linked to the release and accumulation of DOM in phytoplankton post-bloom conditions. Seawater temperature correlated positively with the number of substrates utilized (i.e. functional richness) and this relationship was maintained in monthly experimental incubations spanning 3°C below and above in situ values. The enhancement of functional richness with experimental warming displayed a unimodal response to ambient temperature, peaking at 16°C. This temperature acted as a threshold separating nutrient-sufficient from nutrient-deficient conditions at the study site, suggesting that trophic conditions will be critical in the response of microbial DOM utilization to future warming.

Effect of water chemistry on nitrogen transformation, dissolved organic matter composition and microbial community structure in hyporheic zone sediment columns

Controlled surface water systems, including those with dams lead to dynamic stage changes that alter the fluctuation directions of flow exchange in the hyporheic zones (HZ). However, the nitrogen transformation, dissolved organic matter (DOM) composition, and microbial community responding to variable scenarios of water source and hyporheic exchange are poorly studied. The present work investigated nitrogen transformation in HZ sediments, focusing on how microbial community structure and biological functions related to nitrogen transformation and sediment-attached DOM compositions. Upwelling of synthesized groundwater, downwelling of synthesized river water and exchangeable elution of both feed water created distinct microbial zonation and N-transformation processes. Mixing of river water and groundwater enhanced microbial diversity, microbial co-occurrence network complexity and N-transformation functions. In terms of the sediment-attached DOM properties after hyporheic exchanges, humic fractions occupied the predominant chromophoric DOM. Correlation analysis implied that there were more DOM properties, e.g., tryptophan-like proteins, humic-like fractions, and the source of humic fractions, involved in affecting the microbial community under downwelling flow. Co-occurrence network analysis verified that fluorescent components, protein-like and lignin-like fractions in sediment-detached DOM were clustered with microbial communities in one module in downwelling column, implying closer interactions among microbial communities and DOM fractions. The strains of Nitrospinae, Dinghuibacter, and Lentimicrobium etc. were key species collaborating to metabolize both nitrogen and DOM in HZ sediments. The work provides insights into how the nitrogen transformation, DOM compositional changes, as well as the linkages between community structure and DOM factions, response to the changes in water chemistry, leading to valuable insights into hyporheic zone functions.

Increased microbial and substrate complexity result in higher molecular diversity of the dissolved organic matter pool

AbstractMarine dissolved organic matter (DOM) represents one of the largest reduced carbon pools on Earth. Diverse microbial metabolic activities play important roles in shaping this pool. However, the links between changing DOM substrates and microbial communities and its influence on the microbial produced DOM remain poorly understood. In this study, we investigated how the addition of substrates with different complexity (glucose, laminarin, and Synechococcus‐derived DOM) impacted the production of new DOM by an individual opportunist Alteromonas strain and a coastal natural microbial community. Our experiments reveal that the microbial complexity was more important than the substrate in shaping the molecular composition of DOM. Furthermore, our results showed that the DOM composition played a larger role in shaping the microbial compositions than the concentrations of DOM and inorganic nutrients. Combined our network analysis revealed that complex substrates resulted in higher molecular diversity of the microbial produced DOM, sustained a higher microbial diversity, and maintained a more diverse association between microbial communities and DOM molecules. Overall, the present study indicate that the microbial diversity contributes to DOM molecular diversity and vice versa, highlighting the importance of microbial–substrate interactions in shaping the marine DOM pool.

The glacial–terrestrial–fluvial pathway: A multiparametrical analysis of spatiotemporal dissolved organic matter variation in three catchments of Lake Nam Co, Tibetan Plateau

The Tibetan Plateau (TP) is a sensitive alpine environment of global importance, being Asia's water tower, featuring vast ice masses and comprising the world's largest alpine grasslands. Intensified land-use and pronounced global climate change have put pressure on the environment of the TP. We studied the tempo-spatial variability of dissolved organic matter (DOM) to better understand the fluxes of nutrients and energy from terrestrial to aquatic ecosystems in the TP. We used a multiparametrical approach, based on inorganic water chemistry, dissolved organic carbon (DOC) concentration, dissolved organic matter (DOM) characteristics (chromophoric DOM, fluorescence DOM and δ13C of DOM) in stream samples of three catchments of the Nam Co watershed and the lake itself. Satellite based plant cover estimates were used to link biogeochemical data to the structure and degradation of vegetation zones in the catchments. Catchment streams showed site-specific DOM signatures inherited from glaciers, wetlands, groundwater, and Kobresia pygmaea pastures. By comparing stream and lake samples, we found DOM processing and unification by loss of chromophoric DOM signatures and a change towards an autochthonous source of lake DOM. DOM diversity was largest in the headwaters of the catchments and heavily modified in terminal aquatic systems. Seasonality was characterized by a minor influence of freshet and by a very strong impact of the Indian summer monsoon on DOM composition, with more microbial DOM sources. The DOM of Lake Nam Co differed chemically from stream water samples, indicating the lake to be a quasi-marine environment in regards to the degree of chemical modification and sources of DOM. DOM proved to be a powerful marker to elucidate consequences of land use and climatic change on biogeochemical processes in High Asian alpine ecosystems.