Microbial Decomposition Research Articles

Estimation of net accumulation and removal of fluorescent dissolved organic matter in different Baltic Sea water masses

This study aimed to detect non-conservative processes that affect the distribution of fluorescent dissolved organic matter (FDOM) in the Baltic Sea. An extensive data set comprised of 408 FDOM data, optical and physical profiles, and the development of a water masses balance model allowed us to ascertain the sources of mixing anomalies. These were seen as second-order deviations in the FDOM distribution as a function of salinity in three layers: surface water, Baltic Sea Winter Water, and deep water. The difference between modeled and measured FDOM values at three different excitation/emission wavelengths allowed to show the strength of non-conservative processes, such as photochemical and microbial decomposition (negative residual values) or extracellular release of dissolved organic matter from phytoplankton, heterotrophic uptake and release from anoxic sediments (positive residual values). Humic-like FDOM fractions displayed positive residuals in all seasons for intermediate and deep layers and negative residuals in surface waters. Largest accumulation rates of humic-like fractions were reached in the Gulf of Gdańsk during summer in intermediate and deep layers, while the greatest removal in surface waters was observed during spring in the Bornholm and Gotland Basins and during summer in the Gulf of Gdańsk, probably due to photodegradation. Positive residuals of the protein-like fraction were observed at the surface in summer and autumn in the Gulf of Gdańsk, probably linked to the abundance of phytoplankton and also due to the low molecular weight by-products of photodegradation of humic-like components. Spatial transects revealed an increase in humic-like residuals with depth and a strong correlation with apparent oxygen utilization, increasing with higher fluorescence and exhibiting an asymptotic trend. A relationship was found between the protein-like fractions and phytoplankton biomass proxies. A generalized concept for FDOM cycling in the Baltic Sea was proposed, highlighting photobleaching as the dominant non-linear process determining the efficiency of humic-like FDOM removal. The protein-like component was found to be more efficiently taken up by aerobic prokaryotes at the surface. Microbial utilization and reworking of organic matter, release from sediments, and a decade-long stagnation of bottom water masses, all contribute to the observed accumulation of FDOM in mesohaline deep waters below the permanent pycnocline in the Baltic Sea.

Soil organic carbon sequestration under Araucaria angustifolia plantations but not under exotic tree species on a mountain range

ABSTRACT Plantation forests can be efficient C sinks in biomass and soil organic carbon (SOC), but the latter depends on many factors, including climate. Tropical humid, mountain areas have cooler temperatures, slowing microbial decomposition, and thus can store considerable SOC. However, the effects of forest plantations on SOC of these montane areas are still poorly studied. Here, we aimed to assess changes in SOC, and related soil properties, after conversion of native rainforest to plantations of five tree species, with rotation cycles varying from 7 to 30 years, on the Mantiqueira Range, Minas Gerais, Brazil. We measured SOC contents and stocks (0.00-0.40 m layer) under a native montane rainforest (control) and plantations of Eucalyptus, Pinus, Cunninghamia, Cupressus and Araucaria, all planted in 3 × 3 m spacing, at an altitude of ca. 1,300 m, marked by humid and cool climate, where SOC contents are naturally high. Soil organic carbon varied from 55 g kg -1 under Eucalyptus to 105 g kg -1 under Araucaria (0.00-0.05 m layer), decreasing in depth (0.20-0.40 m) to the still high values of 20-40 g kg -1 . Soil organic carbon stocks for the top 0.20 m were also high, reaching ca. 140 Mg ha -1 under Araucaria, significantly higher value than the native forest (ca. 90 Mg ha -1 , p<0.05), which did not differ from the other species. Soil organic carbon stocks were not affected in the 0.20-0.40 m soil layer, whereas soil structure patterns changed under some species, without however resulting in bulk density changes, and pH decreased under Araucaria. Such data showed large SOC stocks under montane native forests can not only be preserved upon conversion to forest plantations, but considerable SOC sequestration can be achieved in 30-years rotation cycles plantations of indigenous Araucaria angustifolia, marked by more open canopies and greater understory biomass.

Seven-year long-term inoculation with Funneliformis mosseae increases maize yield and soil carbon storage evidenced by in situ 13C-labeling in a dryland

Arbuscular mycorrhizal fungi (AMF) establish symbiotic relationships with roots of most plants, contributing to plant water uptake and soil carbon (C) sequestration. However, the interactive contribution and of long-term field AMF inoculation and water conservation on maize yield and soil organic carbon (SOC) sequestration in drylands remain largely unknown. After 7-year long-term field inoculation with AMF Funneliformis mosseae, AMF suppression by fungicide benomyl, and no-AMF/no-benomyl control, and two water conservation practices of half-film and full-film mulching (∼50 % and ∼100 crop planted area covered with plastic film), this study thus applied in situ 13CO2-C labeling and high-throughput sequencing to quantify newly photosynthetically assimilated C into different soil C pools including soil aggregates and respiration, and their effects on maize growth and productivity. Results showed that 7-year long-term AMF inoculation significantly increased the relative abundance of F. mosseae in rhizosphere soil and root AMF colonization, indicating that F. mosseae successfully dominated in AMF communities. Compared to no-AMF/no-benomyl control, AMF colonization significantly increased shoot biomass and maize yield by 17.9 % and 20.3 % while mitigated the less water conservation effects of half-film mulching on maize performance. The SOC content under field AMF inoculation SOC was increased from 7.9 to 8.4 g kg−1 and also the mean weight diameter of aggregates (1.21 to 1.35), e.g. aggregate stability. After 1 and/or 40 days 13C labeling, the enhanced 13C translocations into macro-aggregates with decreased 13C emissions from microbial decomposition under field AMF inoculation had contributed to SOC conservation in bulk soil. These results suggest that AMF inoculation in dryland crops is promising to increase crop yield while promoting more atmospheric CO2 fixation in soil aggregates. A long-term field AMF inoculation will enhance our understanding of applying beneficial mycorrhizal fungi to enhance soil C sequestration and also crop yield via plant-fixed atmospheric CO2 in semi-arid and arid farmlands.

Salamander loss alters montane stream ecosystem functioning and structure through top‐down effects

AbstractAmphibians are among the most endangered taxa worldwide, but little is known about how their disappearance can alter the functioning and structure of freshwater ecosystems, where they live as larval stages. This is particularly true for urodeles, which often are key predators in these ecosystems. The fire salamander (Salamandra salamandra) is a common predator in European fresh waters, but the species is declining due to habitat loss and the infection by fungal pathogens. We studied the consequences of fire salamander loss from three montane streams, by comparing two key ecosystem processes (periphyton accrual and leaf litter decomposition) and the structure of three communities (periphytic algae, aquatic hyphomycetes and invertebrates) using stream enclosures with and without salamander larvae. Salamander loss did not cause changes in invertebrate abundance or community structure, except for one stream where abundance increased in the absence of salamander larvae. However, salamander loss led to lower periphyton accrual, changes in algal community structure and slower leaf litter decomposition, with no associated changes in fungal communities or microbial decomposition. The changes observed may have been caused by release of salamander predatory pressure on invertebrates, which could have promoted their grazing on periphyton, in contrast to their preference for leaf shredding in the presence of salamander. Our study demonstrates an important role of salamander larvae in montane streams through top‐down control of lower trophic levels and thus in regulating key stream ecosystem processes. Our results highlight the need for improving protection measures for amphibians to prevent these alterations on ecosystem structure and function.

Elevation Shapes Soil Microbial Diversity and Carbon Cycling in Platycladus orientalis Plantations

Diversified soil microbiomes are the key drivers of carbon fixation and plant residue decomposition in forest ecosystems. Revealing the elevation patterns of soil microbial carbon cycling in forests is essential for utilization of forest ecological resources. However, the soil microbial diversity and carbon cycle processes in Platycladus orientalis plantations across different elevations are still unclear. Here, we established a gradient with three elevations (118 m, 300 m, and 505 m) on the Beijing Ming Dynasty Tombs Forest Farm, which is located in Changping District, Beijing. The metagenomics method was applied to study the soil microbiome, with a special focus on the carbon cycle process at each elevation. We found the diversity and composition of the soil microbiomes significantly varied across the elevation gradients. The structure of bacteria and archaea was mainly driven by soil total potassium, pH and NH4+, but the eukaryota had no significant relationship with the environmental factors. The relative abundance of genes involved in microbial carbon fixation and decomposition of organic carbon were also significantly impacted by elevation, with the former showing increasing, u-shaped, or hump trends with increasing elevation, but the latter only showing hump trends. The rTCA cycle and 3-hydroxypropionate pathway were the dominant carbon fixation pathways in the Platycladus orientalis plantations. The elevation gradient shaped the microbial decomposition of plant-derived organic carbon by changing soil properties and, furthermore, led to soil organic carbon stock losses. These findings increase our understanding of soil microbial diversity and the carbon cycle across different elevations and provide a theoretical basis for the utilization of forest ecological resources to promote carbon sequestration.

Multiple stressors affecting microbial decomposer and litter decomposition in restored urban streams: Assessing effects of salinization, increased temperature, and reduced flow velocity in a field mesocosm experiment

A multitude of anthropogenic stressors impact biological communities and ecosystem processes in urban streams. Prominent among them are salinization, increased temperature, and altered flow regimes, all of which can affect microbial decomposer communities and litter decomposition, a fundamental ecosystem process in streams. Impairments caused by these stressors individually or in combination and recovery of communities and ecosystem processes after release from these stressors are not well understood. To improve our understanding of multiple stressors impacts we performed an outdoor stream mesocosm experiment with 64 experimental units to assess the response of microbial litter decomposers and decomposition. The three stressors we applied in a full-factorial design were increased salinity (NaCl addition, 0.53 mS cm−1 above ambient), elevated temperature (3.5 °C above ambient), and reduced flow velocity (3.5 vs 14.2 cm s−1). After two weeks of stressor exposure (first sampling) and two subsequent weeks of recovery (second sampling), we determined leaf-associated microbial respiration, fungal biomass, and the sporulation activity and community composition of aquatic hyphomycetes in addition to decomposition rates of black alder (Alnus glutinosa) leaves confined in fine-mesh litter bags. Microbial colonization of the litter was accompanied by significant mass loss in all mesocosms. However, there was little indication that mass loss, microbial respiration, fungal biomass, sporulation rate or community composition of aquatic hyphomycetes was strongly affected by either single stressors or their interactions. Two exceptions were temperature effects on sporulation and decomposition rate. Similarly, no notable differences among mesocosms were observed after the recovery phase. These results suggest that microbial decomposers and leaf litter decomposition are either barely impaired by exposure to the tested stressors at the levels applied in our experiment, or that communities in restored urban streams are well adapted to cope with these stressor levels.

Differential response of bacteria and fungi to drought on the decomposition of Sarcocornia fruticosa woody stems in a saline stream

AbstractInland saline ecosystems suffer multiple stresses (e.g., high radiation, salinity, water scarcity) that may compromise essential ecosystem functions such as organic matter decomposition. Here, we investigated the effects of drought on microbial colonization and decomposition of Sarcocornia fruticosa woody stems across different habitats in a saline watershed: on the dry floodplain, submerged in the stream channel and at the shoreline (first submerged, then emerged). Unexpectedly, weight loss was not enhanced in the submerged stems, while decomposition process differed between habitats. On the floodplain, it was dominated by fungi and high cellulolytic activity; in submerged conditions, a diverse community of bacteria and high ligninolytic activity dominated; and, on the shoreline, enzyme activities were like submerged conditions, but with a fungal community similar to the dry conditions. Results indicate distinct degradation paths being driven by different stress factors: strong water scarcity and photodegradation in dry conditions, and high salinity and reduced oxygen in wet conditions. This suggests that fungi are more resistant to drought, and bacteria to salinity. Overall, in saline watersheds, variations in multiple stress factors exert distinct environmental filters on bacteria and fungi and their role in the decomposition of plant material, affecting carbon cycling and microbial interactions.

Procedure for rapid determination of bile-tolerant gram-negative bacteria in drugs

The European Pharmacopoeia is a single reference study for the quality control of drugs. The official standards published within it provide a legal and scientific basis for quality control in the processes of drugs development, production and marketing. However, the long experience and the multitude of studies have demonstrated that medicinal forms represent unstable dispersed systems and can undergo various manifest or non-manifest changes, leading to drug incompatibilities. Along with the physico-chemical transformations, microbiological transformations can occur with the contamination of the final product with pathogenic, conditionally pathogenic or even saprophytic germs, especially medicines that do not undergo final sterilization or are not aseptically prepared. Microbial contamination of the drug can be an indicator of the production conditions; it can cause the instability of the product through the microbial decomposition of auxiliary substances, the alteration or definitive cancellation of the therapeutic effect of the active substances, the appearance of metabolites with toxic properties, especially those fractions of endotoxins on the wall cell of gram-negative bacteria with the development of allergenic, pyrogenic substances and the induction of the danger of local orgeneral infections. An important role is attributed to the group of bile-tolerant gram-negative bacteria as representatives of microorganisms that are inadmissible in one g/ml for the absence test and for the quantitative test <10 NCP/g/ml (probable number of bacteria), inadmissible in non-sterile medicinal products, herbal medicinal products for oral use and extracts used in their preparation. Due to the diversity of medicinal forms in terms of content, method of application, and therapeutic action, these preparations fulfil the indispensable conditions for the growth of microorganisms, therefore a primary concern is to avoid microbial contamination from the technological phase to the administration phase in order to prevent complications associated with bacterial infections. The given study reveals the testing of the procedure for the rapid determination of inadmissible microorganisms in non-sterile medicinal products and herbal drugs for oral use and the extracts used in their preparation, especially microorganisms of the group Enterobacteriaceae spp.

Plastic and terrestrial organic matter degradation by the humic lake microbiome continues throughout the seasons.

Boreal freshwaters go through four seasons, however, studies about the decomposition of terrestrial and plastic compounds often focus only on summer. We compared microbial decomposition of 13C-polyethylene, 13C-polystyrene, and 13C-plant litter (Typha latifolia) by determining the biochemical fate of the substrate carbon and identified the microbial decomposer taxa in humic lake waters in four seasons. For the first time, the annual decomposition rate including separated seasonal variation was calculated for microplastics and plant litter in the freshwater system. Polyethylene decomposition was not detected, whereas polystyrene and plant litter were degraded in all seasons. In winter, decomposition rates of polystyrene and plant litter were fivefold and fourfold slower than in summer, respectively. Carbon from each substrate was mainly respired in all seasons. Plant litter was utilized efficiently by various microbial groups, whereas polystyrene decomposition was limited to Alpha- and Gammaproteobacteria. The decomposition was not restricted only to the growth season, highlighting that the decomposition of both labile organic matter and extremely recalcitrant microplastics continues throughout the seasons.

Wastewater Treatment Sludge and Agricultural Wastes: Management by Composting Process

This study aimed to investigate the compostability of wastewater treatment sludge and evaluate the effects on compost quality of adding cotton gin waste and peanut shell. For this purpose, treatment sludge was mixed with cotton gin waste in the ratios of 60:40 in M1 reactor and 80:20 in M2 reactor, while in M3 and M4 reactors, treatment sludge was mixed with peanut shell in the same proportions. The highest temperatures were reached in reactors M2 (65.2 °C) and M4 (68.7 °C) where 80% treatment sludge was added. These reactors also experienced the highest organic matter losses of 42.2% and 31.5%, respectively. It can be stated that a faster microbial decomposition and stabilization occurred in these reactors. It can be said that the composting process may be a preferable method for the management of treatment sludge and agricultural wastes. Furthermore, the outcomes of the study can serve the food industry and agriculture sector through effective bioconversion of organic waste.Graphical

Warming effects on grassland soil microbial communities are amplified in cool months.

Global warming modulates soil respiration (RS) via microbial decomposition, which is seasonally dependent. Yet, the magnitude and direction of this modulation remain unclear, partly owing to the lack of knowledge on how microorganisms respond to seasonal changes. Here, we investigated the temporal dynamics of soil microbial communities over 12 consecutive months under experimental warming in a tallgrass prairie ecosystem. The interplay between warming and time altered (P < 0.05) the taxonomic and functional compositions of microbial communities. During the cool months (January to February and October to December), warming induced a soil microbiome with a higher genomic potential for carbon decomposition, community-level ribosomal RNA operon (rrn) copy numbers, and microbial metabolic quotients, suggesting that warming stimulated fast-growing microorganisms that enhanced carbon decomposition. Modeling analyses further showed that warming reduced the temperature sensitivity of microbial carbon use efficiency (CUE) by 28.7% when monthly average temperature was low, resulting in lower microbial CUE and higher heterotrophic respiration (Rh) potentials. Structural equation modeling showed that warming modulated both Rh and RS directly by altering soil temperature and indirectly by influencing microbial community traits, soil moisture, nitrate content, soil pH, and gross primary productivity. The modulation of Rh by warming was more pronounced in cooler months compared to warmer ones. Together, our findings reveal distinct warming-induced effects on microbial functional traits in cool months, challenging the norm of soil sampling only in the peak growing season, and advancing our mechanistic understanding of the seasonal pattern of RS and Rh sensitivity to warming.

Straw from Different Crop Species Recruits Different Communities of Lignocellulose-Degrading Microorganisms in Black Soil.

The biological degradation of plant residues in the soil or on the soil surface is an integral part of the natural life cycle of annual plants and does not have adverse effects on the environment. Crop straw is characterized by a complex structure and exhibits stability and resistance to rapid microbial decomposition. In this study, we conducted a microcosm experiment to investigate the dynamic succession of the soil microbial community and the functional characteristics associated with lignocellulose-degrading pathways. Additionally, we aimed to identify lignocellulose-degrading microorganisms from the straw of three crop species prevalent in Northeast China: soybean (Glycine max Merr.), rice (Oryza sativa L.), and maize (Zea mays L.). Our findings revealed that both the type of straw and the degradation time influenced the bacterial and fungal community structure and composition. Metagenome sequencing results demonstrated that during degradation, different straw types assembled carbohydrate-active enzymes (CAZymes) and KEGG pathways in distinct manners, contributing to lignocellulose and hemicellulose degradation. Furthermore, isolation of lignocellulose-degrading microbes yielded 59 bacterial and 14 fungal strains contributing to straw degradation, with fungi generally exhibiting superior lignocellulose-degrading enzyme production compared to bacteria. Experiments were conducted to assess the potential synergistic effects of synthetic microbial communities (SynComs) comprising both fungi and bacteria. These SynComs resulted in a straw weight loss of 42% at 15 days post-inoculation, representing a 22% increase compared to conditions without any SynComs. In summary, our study provides novel ecological insights into crop straw degradation by microbes.

Controls and relationships of soil organic carbon abundance and persistence vary across pedo-climatic regions.

One of the largest uncertainties in the terrestrial carbon cycle is the timing and magnitude of soil organic carbon (SOC) response to climate and vegetation change. This uncertainty prevents models from adequately capturing SOC dynamics and challenges the assessment of management and climate change effects on soils. Reducing these uncertainties requires simultaneous investigation of factors controlling the amount (SOC abundance) and duration (SOC persistence) of stored C. We present a global synthesis of SOC and radiocarbon profiles (nProfile = 597) to assess the timescales of SOC storage. We use a combination of statistical and depth-resolved compartment models to explore key factors controlling the relationships between SOC abundance and persistence across pedo-climatic regions and with soil depth. This allows us to better understand (i) how SOC abundance and persistence covary across pedo-climatic regions and (ii) how the depth dependence of SOC dynamics relates to climatic and mineralogical controls on SOC abundance and persistence. We show that SOC abundance and persistence are differently related; the controls on these relationships differ substantially between major pedo-climatic regions and soil depth. For example, large amounts of persistent SOC can reflect climatic constraints on soils (e.g., in tundra/polar regions) or mineral absorption, reflected in slower decomposition and vertical transport rates. In contrast, lower SOC abundance can be found with lower SOC persistence (e.g., in highly weathered tropical soils) or higher SOC persistence (e.g., in drier and less productive regions). We relate variable patterns of SOC abundance and persistence to differences in the processes constraining plant C input, microbial decomposition, vertical C transport and mineral SOC stabilization potential. This process-oriented grouping of SOC abundance and persistence provides a valuable benchmark for global C models, highlighting that pedo-climatic boundary conditions are crucial for predicting the effects of climate change and soil management on future C abundance and persistence.

Amino acid carbon isotope profiles provide insight into lability and origins of particulate organic matter

AbstractIdentifying the phytoplankton origin of particulate organic matter (POM) in the deep ocean is challenging due to the changing phytoplankton composition and varied extent of decomposition by heterotrophic bacteria and zooplankton. Here, we report vertical distributions of amino acid stable carbon isotope values (δ13C) measured in particles in the South China Sea. Carbon‐weighted amino acid δ13C values generally parallel bulk POM δ13C profiles with a positive offset from 2.4‰ in the surface water to 6.0‰ in deep. Accordingly, a lability model is introduced to describe the relative distribution and isotopic linkage of labile and refractory particulate organic carbon. Temporal changes of amino acid δ13C were observed during the microbial decomposition of two phytoplankton strains, the prokaryote cyanobacterium Synechococcus and the eukaryote diatom Thalassiosira weissflogii. Principal component analysis of individual amino acid δ13C values from the decomposing cells separate samples into two components, reflecting the influence of microbial decomposition and taxonomic differences, respectively. These two components were further applied to particles. A major contribution from decomposing phytoplankton to particles below the euphotic zone was observed, with more prokaryote organic matter in the basin and a larger contribution from eukaryotes at stations near the productive northern shelf. Our findings show the applicability of amino acid δ13C values in tracing the lability and phytoplankton origins of POM in samples with varied extents of decomposition in marine environments.

Production of greenhouse gases by logging residue in boreal clear-cut forests

AbstractForest deadwood is an important carbon reserve, estimated to contain 8% of the total forest carbon. This type of woody debris is recognized as a source of carbon dioxide (CO2), as the carbon is released back into the atmosphere by microbial decomposition. Production of methane (CH4) and nitrous oxide (N2O) has also been reported. In managed forests, logging residues form a major source of fine deadwood, but its role in the greenhouse gas exchange of forest ecosystems is poorly understood. We studied the greenhouse gas production of spruce and birch left-over fine woody debris and estimated the residence time of these residues at 18 spruce-dominated boreal forest sites in Central Finland. The study areas consisted of clear-cut forest stands, totally covering approximately 47 hectares, with logging residue ages varying between 0 and 10 years. The research was carried out over eight months from May to December 2019. We observed that CO2 dominated the greenhouse gas production of the logging residues, with the production being regulated by air temperature, tree species, residue age, and wood moisture. Emission of CO2 continued throughout the research period with a clear seasonal pattern. Production of CH4 and N2O was also observed, but not in climatically-relevant amounts. Deadwood half-life was estimated at 18 years for spruce and 9 years for birch. Our study demonstrates that logging residues form a mid-term carbon reserve and suggests that global warming could reduce the lifetime of the residues as a result of elevated and temperature-dependent CO2 release in the studied Myrtillus type forest stands.

Exploring the role of domesticated resistors in batch-mode microbial desalination cell

Microbial Desalination Cells (MDCs) are an electrochemical process that harnesses microbial reactions to simultaneously treat wastewater, generate power, and desalinate water. By utilizing microbial decomposition of organic pollutants in wastewater, MDCs offer a sustainable and energy-efficient alternative to conventional desalination technologies. The technical framework of MDCs emphasizes the integration of water-electricity principles, making them promising for future applications in seawater desalination, wastewater treatment, resource recovery, and water softening. This study investigates the impact of acclimation resistance, represented by four different domesticated resistors values of 1 kΩ, 100Ω, 51Ω, and 10Ω, on the performance of MDCs. Larger acclimation resistors exhibit higher power performance, with the case of 100Ω achieving a power density of 0.33 mA/m2 and the case of 1 kΩ achieving the highest current density of 1.90 mA/m2. Furthermore, the case with an acclimation resistance of 1 kΩ exhibits superior performance in terms of chemical oxygen demand (COD) removal, achieving a removal rate of 76.3% on day 1. Conversely, the case with an acclimation resistance of 10Ω demonstrates the best desalination performance, achieving a desalination rate of 9.0%. It should be noted that the optimal performance in terms of COD removal and desalination capacity varies due to the various operational mechanisms involved. . The findings of this study provide valuable insights for enhancing the performance of MDCs in future applications, enabling further improvements in their efficiency and effectiveness.

Microbial response to long-term fertilization of paddy soils: Apparent and real priming effects

Fertilization is crucial for increasing crop productivity and it alters soil microbial biomass and activities. These alterations exert implications for soil carbon (C) stocks, primarily through the priming effect (PE). Here, we investigated the mechanisms underlying PE and their impact on soil C stocks in paddy soils subjected to long-term (31 years) fertilization. Soils from four depths within the upper 40 cm layer, subjected to four fertilization types (no fertilizer, mineral fertilizer, mineral + straw, mineral + chicken manure), were incubated for 60 days with or without 13C-labeled glucose. Following substrate addition, an increase in isotopically unlabeled CO2 efflux may stem from accelerated microbial turnover (apparent PE) or modified soil organic matter (SOM) mineralization (real PE). By analyzing microbial biomass (MBC), CO2 and dissolved organic C (DOC) dynamics, we explored the partitioning of C from glucose into three pools. Following glucose addition (day 2), the SOM-derived MBC decreased by 4.7 % at 0–10 cm in unfertilized and by 6.3 % in mineral-fertilized soils. SOM-derived MBC also decreased in soils fertilized with straw- and chicken manure at 0–20 and 0–30 cm. Hence, the apparent PE closely correlated with fertilization types. At day 2, the SOM-derived DOC increased with the increase in extractable Fe2+ content, indicating high contribution of the released mineral-bound organic C in the DOC pool. Microbial decomposition of SOM-derived DOC and loss of unlabeled C through apparent PE increased the release of unlabeled CO2, resulting in a positive but low PE. After 60 days of incubation, the addition of glucose to the subsoils (30–40 cm) caused a net loss of C (positive PE) of 6.6–19 mg kg−1. In contrast, negative PEs were observed in the topsoil, indicating a decrease in microbial activity and C turnover. These findings suggested that fertilization regimes, whether involving long-term extra C input or not, can alter microbial biomass and turnover rates. Moreover, the C turnover mechanisms in paddy soils are complex, including apparent PE, release of mineral-bound organic C, and negative PE. Collectively, these processes can consequently change soil C stocks.

The role of tidal creeks in shaping carbon and nitrogen patterns in a Chinese salt marsh

Tidal creeks play a crucial role in lateral transport of carbon and nutrients from tidal salt marshes. However, the specific impact of tidal creek development on carbon and nutrient distribution within the marsh remains poorly understood. The objective of this study is to assess the influence of lateral tidal flooding through the tidal creeks on the spatial distribution of carbon and nitrogen fractions in the soils of a Chinese temperate salt marsh. We conducted a comprehensive analysis of the relative variations in different carbon and nitrogen fractions, along with soil physicochemical and microbial indicators, between the bank soil of the tidal creek and its lateral inland soils across high, middle, and low flats. Our findings highlight that tidal creek development significantly affects the middle flat, leading to substantial variations in organic carbon and total nitrogen. The low flat mainly experiences changes in dissolved inorganic carbon levels. Furthermore, a lateral increase in microbial biomass is observed in the middle flat, indicating that the significantly lower SOC in the middle flat might be ascribed to enhanced microbial decomposition. The lateral enrichment of dissolved inorganic carbon in the low flat is possibly related to the nearshore location and/or abiotic adsorption in inorganic carbon sequestration. Overall, this study demonstrates the critical role of tidal creek development in shaping the distribution patterns of carbon and nitrogen fractions in tidal salt marshes.

Sphagnan in Sphagnum-dominated peatlands: bioavailability and effects on organic matter stabilization

The unique pectin-like carbohydrate “sphagnan” has been shown to protect organic matter from microbial decomposition in Sphagnum-dominated peatlands. However, the bioavailability of sphagnan has not been evaluated, and it is not known if it persists or continues to affect decomposition processes over the long timescales of peat formation. To address this, we assessed the connection between sphagnan content and organic matter decomposition rates in a temperate peatland near Fennville, MI, USA. We compared the effects of sphagnan over two timescales: (1) a short-term litter incubation assay using mosses from different peatland microtopographies; and (2) oxic and anoxic incubation assays of peat collected from multiple depths within the peat profile, reflecting a natural long-term decomposition continuum. On both timescales, we hypothesized that higher sphagnan content would be associated with lower decomposition rates, and that sphagnan would be selectively preserved compared to bulk C and other carbohydrates. The litter decomposition experiment supported both hypotheses, as higher sphagnan content was associated with lower mass loss, and sphagnan content increased due to selective preservation. In the peat, we observed weak but significant correlations between the relative abundance of sphagnan (as a fraction of total non-cellulosic sugars) and both aerobic and anaerobic respiration rates. This relationship was stronger in cores collected from hollow microtopographies than those from hummocks. However, there was not a significant relationship between respiration rates and the total (C-normalized) sphagnan content. Sphagnan content increased with depth in the peat profile, indicating selective preservation compared to bulk C. Additionally, we observed the accumulation of non-cellulosic glucose in the deep peat, likely derived from microbial exopolysaccharides. Together, these results indicate that sphagnan persists in the catotelm and continues to contribute to the long-term stabilization of organic matter in Sphagnum-rich peatlands, although the weak relationship with respiration indicates that its influence is relatively minor.

The roles of seagrass litter decomposition in determining blue carbon sink capacity

AbstractSeagrass litter is a crucial autochthonous source of sediment organic carbon (Corg) that contributes to Corg storage in coastal ecosystems. However, our understanding of seagrass litter decomposition effects on sediment Corg sequestration and the factors influencing the capacity for autochthonous carbon sequestration remains limited. We investigated Zostera marina litter decomposition dynamics in eelgrass meadows along the Korean coast by monitoring changes in the remaining litter mass and autochthonous Corg during the decomposition process. We used a double‐component exponential decay models to characterize the decomposition dynamics and estimate the autochthonous Corg remaining. We also identified potential factors affecting litter decay and Corg accumulation in sediments by examining site‐specific physicochemical properties. Our findings revealed that double‐component models effectively characterized litter decomposition dynamics and indicated greater preservation of litter‐derived slowly degrading Corg in sediments. The reduced decomposition of litter materials owing to low oxygen availability in the muddy sediments led to greater retention of litter mass and litter‐derived Corg in sediments. The anoxic conditions of below‐ground litterbags, compared with above‐ground litterbags, could be alleviated by the oxygen transport through fresh Z. marina roots, thereby potentially stimulating the microbial decomposition of Z. marina below‐ground litter materials at these sites. Our findings highlight the importance of understanding litter decomposition dynamics to accurately assess the carbon sink capacity of seagrass meadows, and demonstrate that physicochemical properties can influence seagrass litter decomposition.