Microbial Community Research Articles

Enhancing effect of conductive materials and rumen microorganisms on the anaerobic digestion performance of a real traditional Chinese medicine wastewater

This work evaluated the effect of different concentrations of conductive materials and rumen microorganisms on the anaerobic digestion (AD) performance of real traditional Chinese medicine (TCM) wastewater. The experiments first determined the optimal organic concentration of 0.25 L/L for the AD system and removed suspended solids from real TCM wastewater to reduce the inhibition effect on methanogenesis. Analysis of the modified Gompertz model showed that the addition of activated carbon, biochar, cow manure, and rumen fluid at doses of 12 g/L, 12 g/L, 12 mL/L, and 125 mL/L, respectively, had the greatest effect on CH4 production, increasing the cumulative CH4 yield by 13.5 %, 10.4 %, 26.8 %, and 32.9 %. Through microbial community and metabolism pathway analyses, the conductive materials promoted direct interspecies electron transfer (DIET) between Clostridium and Methanothrix, and the acetoclastic methanogenic pathway dominated by acetyl-CoA synthase. Rumen microorganisms enhanced AD performance by promoting the growth of hydrogenotrophic methanogens and the abundance of genes dominated by formylmethanofuran dehydrogenase in the hydrogenotrophic methanogenic pathway, illustrating the relationship between microbial community and metabolism pathway. Rumen microorganisms increased CH4 production more than conductive materials in real TCM wastewater. This study helps to better understand the internal mechanisms by which different materials enhance AD performance.

Inhibition of denitrification and enhancement of microbial interactions in the AGS system by high concentrations of quinoline

Quinoline represents a highly toxic and structurally stable nitrogen-containing heterocyclic compound in coking wastewater, posing a potential threat to human beings and the ecological environment. In this study, we investigated the impact of gradually elevating quinoline concentration on pollutant removal efficiency, sludge characteristics, microbial community and their interactions in the aerobic granular sludge (AGS) system. The results demonstrated that AGS was capable of effectively degrading quinoline, with a final removal rate of 90 mg/L quinoline reaching 98.54 ± 0.28%. Notably, the denitrification process was significantly impeded in the presence of 90 mg/L quinoline, with the Phase D effluent displaying a notably high NO3--N concentration of 37.09 ± 21.81 mg/L, primarily attributed to the reduced abundance of norank_f_A4b bacteria. As the quinoline concentration increased, the sludge particle size diminished from 3.46 to 2.60 mm, while the settling performance deteriorated significantly, escalating from 31.29 ± 1.63 mL/g to 62.32 ± 2.87 mL/g. Meanwhile, the protein (PN) content in EPS gradually increased (from 19.87 ± 0.88 mg/g MLVSS to 51.22 ± 3.21 mg/g MLVSS), while the polysaccharide (PS) content fluctuated. Quinoline profoundly modified microbial community composition and structure, with deterministic processes dominating community assembly. Network analysis indicated intensified and complex microbial interactions at 90 mg/L quinoline, characterized by significantly higher positive correlations. In addition, rare taxa (RT) dominated the network nodes, with 74 of 93 key species belonging to RT, highlighting their pivotal roles in sustaining system functions and strengthening microbial connections. This study provides new insights into the effects of quinoline on microbial community structure and interactions in AGS system.

Heavy metal exposure reduces larval gut microbiota diversity of the rice striped stem borer, Chilo suppressalis.

Cadmium (Cd), a widely distributed environmental pollutant in agroecosystems, causes negative effects on crops and herbivores through bottom-up processes. The gut microbial community of an insect can play a critical role in response to metal stress. To understand how microbiota affect the stress responses of organisms to heavy metals in agroecosystems, we initially used 16S rRNA sequencing to characterize the larval gut microbiota of Chilo suppressalis, an important agricultural pest, exposed to a diet containing Cd. The species richness, diversity, and composition of the gut microbial community was then analyzed. Results revealed that while the richness (Chao1 and ACE) of gut microbiota in larvae exposed to Cd was not significantly affected, diversity (Shannon and Simpson) was reduced due to changes in species distribution and relative abundance. Overall, the most abundant genus was Enterococcus, while the abundance of the genera Micrococcaceae and Faecalibaculum in the control significantly superior to that in Cd-exposed pests. Phylogenetic investigation of microbial communities by the reconstruction of unobserved states (PICRUSt) showed that the intestinal microorganisms appear to participate in 34 pathways, especially those used in environmental information processing and the metabolism of the organism. This study suggests that the gut microbiota of C. suppressalis are significantly impacted by Cd exposure and highlights the importance of the gut microbiome in host stress responses and negative effects of Cd pollution in agroecosystems.

Salinity drives niche differentiation of soil bacteria and archaea in Hetao Plain, China

Soil salinization is a critical environmental issue that limits plant productivity and disrupts ecosystem functions. As important indicators of soil environment, soil microbes play essential roles in driving nutrient cycling and sustaining ecosystem services. Therefore, understanding how microbial communities and their functional potentials respond to varying levels of soil salinization across different land use types is crucial for the restoration and management of salt-affected ecosystems. In this study, we randomly selected 63 sites across the Hetao Plain, covering an area of ∼2500 km2. Our results showed that both salinity- and fertility-related soil parameters were significantly correlated with bacterial and archaeal diversities, with soil salinity emerging as the stronger predictor of prokaryotic diversity. Intriguingly, bacterial and archaeal communities were tightly interlinked but displayed opposite trends in response to environmental factors, indicating a clear microbial niche differentiation driven by soil salinity. Moreover, the generalist functions of bacteria and archaea (e.g., chemoheterotrophy) exhibited contrasting responses to environmental parameters, while their specialist functions (e.g., nitrification) responded consistently. These findings highlight the pivotal role of soil salinity in shaping the niche differentiation of bacterial and archaeal communities in saline soils, providing insights to guide salinity-centered restoration strategies for effective marginal land management.

Livestock grazing strengthens the effect of vole activity on the soil microbial community

Livestock grazing may affect small mammalian herbivore-soil microbe interactions and their association with the structure and functions of the ecosystem. However, the role of factors such as vegetation and soil nutrients in regulating these impacts is not clear. Here we conducted a 9-year experiment in temperate steppe to study how Brandt’s vole (Lasiopodomys brandtii) affects the soil microbial community under different livestock grazing intensities. This experiment contained 12 field enclosures with three livestock grazing intensities: control (CK), light grazing (LG), and moderate grazing (MG). We found that vole activity does not significantly change soil microbial diversity under non-grazing conditions. However, under livestock grazing conditions, vole activity led to a significant reduction in soil bacterial diversity and an increase in fungal diversity, demonstrating the impacts of livestock grazing on rodents-soil microbe interactions. The activity of voles significantly altered soil bacterial community composition, with changes primarily attributed to variations in the relative abundance of the phyla Actinobacteria, Bacteroidetes, Firmicutes, Gemmatimonadetes, and Proteobacteria. The soil fungal community remained relatively stable despite vole activity, which can be attributed to the richness of fungal colonies in mycelium and their low sensitivity to changes in external conditions. Vole activity also influenced soil microbial functional groups, and the variations in these groups were further amplified by livestock grazing. Furthermore, the shift in the microbial community composition and diversity induced by vole activity were mainly associated with the reduction of plant aboveground biomass. Overall, our study suggested that livestock grazing enhanced the changes in the soil microbial community induced by rodents, underscoring the importance of managing livestock grazing regimes for grassland conservation.

Biodiversity-safeguarding threshold for urea-fertilizer application on paddy fields: Protozoa-based toxicity tests

Urea is a widely applied fertilizer to enhance crop yields. Ecological risks associated with the excessive application of urea fertilizer threaten the paddy fields' sustainable agriculture and biodiversity preservation. There are no practical thresholds based on proven data on microbial communities. Protozoa are nitrogen-sensitive organisms. For the first time, this study conducted acute and chronic urea toxicity tests on eight species of organisms. The results indicate that Blepharisma sp. is the most sensitive species to urea exposure and is a suitable indicator for determining the safe threshold of urea. This study estimated the predicted no-effect concentration using species sensitivity distribution curves. Subsequently, it established the threshold for urea application in rice fields based on the fields' area and the surface water's height. The short-term safety threshold for urea in the studied paddy field with black soil is 87.7mg/L, equivalent to 43.85kg of urea per hectare for a single nitrogen fertilizer application. The long-term safety threshold is 5.02mg/L, representing the concentration for re-applicating urea. The biodiversity-safeguarding application threshold provides the basis for developing a urea fertilizer reduction protocol to safeguard the paddy fields' biodiversity.

Novel sulfide-driven denitrification methane oxidation (SDMO) system based on SBR-MBfR and EGSB-MBfR

Traditional denitrification process consumes external organic carbon leading to an increase in treatment costs and carbon emission. A novel sulfide-driven denitrification methane oxidation (SDMO) system, which could simultaneously utilize CH4 and H2S in biogas as electron donors for denitrification to reduce the cost and carbon emission, has been successfully operated in two kinds of reactors SBR-MBfR and EGSB-MBfR for ∼ 200 days in this study. The performance and microbial community were explored meanwhile machine learning approach have been used for predicting the complex effects on SDMO’s denitrification efficiency. Result shows SBR-MBfR’s superior performance with the maximum nitrate removal efficiency > 90 % while the denitrification rates and biological activity were also better than EGSB-MBfR. The autotrophic denitrification (Auto-D) contributed 5 % much more for nitrate removal in SBR-MBfR than EGSB-MBfR while denitrification anaerobic methane oxidation (DAMO) was more prominent in EGSB-MBfR. Nineteen machine learning models were used for operation data training and random forest regressor was demonstrated to be the optimal model for predicting nitrate removal efficiency in SDMO. According to random forest regressor’s analysis, HRT presented the highest importance in affecting SDMO nitrate removal efficiency. After the introduction of biogas for domestication, Auto-D bacteria Thiobacillus was the dominant bacteria in both systems occupying > 20 % and the abundance would increase gradually from ∼ 20 % to ∼ 60 % as H2S content rising. A hidden positive correlation between DAMO bacteria Candidatus Methylomirabilis and Thiobacillus was uncovered by mantel test analysis here, implying the integrating of Auto-D and DAMO process for nitrate removal. This study not only provides insights into the novel SDMO technology but also offers a potential advancement in simultaneously low-carbon wastewater treatment and biogas utilization.

Microbiome and network analysis reveal potential mechanisms underlying Carassius auratus diseases: The interactions between critical environmental and microbial factors

Despite the rapid development of research on aquatic environment microbiota, limited attention has been paid to exploring the complex interactions between microbial communities and aquatic environments. Particularly, the mechanisms underlying fish diseases based on such dynamic interactions remain unknown. This study aimed to address the gap by conducting microbiome and co-occurrence network analyses on the typical freshwater aquaculture systems. High-throughput 16S rRNA gene sequencing results revealed significant differences in the microbiota between the disease and healthy groups. Notably, disease mortality varied consistently with the gradient of relative abundance of Proteobacteria (intestine, R2 = 0.46, p < 0.05) and Cyanobacteria (gill, R2 = 0.67, p < 0.01), indicating their potential use as diagnostic criteria. Furthermore, the elevated hepatosomatic index, NO3-N, COD and TC (sediment) were directly correlated with diseases (r > 0.54, p < 0.01). Mean concentrations of NO3-N, COD and TC were elevated by 78.87%, 25.63% and 44.2%, respectively, in ponds where diseases occurred. Quantitative analysis (qPCR) revealed that Aeromonas sobria infected hosts through a potential pathway of “sediment (4.4 × 105 copy number/g)-water (1.1 × 103 copy number/mL)-intestine (1.2 × 106 copy number/g)”. Similarly, the potential route for Aeromonas veronii was sediment (4.9 × 106 copy number/g) to gill (5.1 × 105 copy number/g). Additionally, the complexity of microbial networks in the intestine, water, and sediment was significantly lower in the disease group, although no similar phenomenon was observed in the gill microbial network. In summary, these findings reveal that elevated concentrations of crucial environmental factors disrupt the linkages within microbiota, fostering the growth of opportunistic bacteria capable of colonizing fish gut or gills. This offers new insights into potential mechanisms by which environmental factors cause disease in fish.

Adaptation strategies of soil microorganisms in resource changes and stoichiometric imbalances induced by secondary succession on the loess plateau

Sequestering farmland for secondary succession is an effective method of restoring ecosystem services to degraded farmland, but long-term secondary succession often alters ecosystem environments, resources, and substrate stoichiometry. Currently, it is not known how resource changes and stoichiometric imbalances due to secondary succession affect soil microbial community structure and function, hindering our understanding of the natural resilience for degraded ecosystems. Here, we assessed nutrient limitation elements, community structure, metabolic functions, co-occurrence network complexity, and community stability of soil microorganisms during secondary succession of abandoned farmlands on the Loess Plateau. Results showed that secondary succession significantly altered plant characteristics and soil properties, as well as causing stoichiometry imbalances in nutrient resources. Along the secondary succession chronosequence, microbial nutrient metabolism shifted from phosphorus (P) limitation to carbon (C) and nitrogen (N) co-limitation. Microbial diversity, eutrophic flora, plant growth-promoting bacteria, and metabolism functional groups increased significantly during the 20 years after the abandonment of the farmlands, but decreased significantly with long-term succession. However, oligotrophic flora and P-solubilizing bacteria became dominant after 30 years of secondary succession on abandoned farmlands. The topological features of microbial co-occurring networks, including nodes, degree, closeness, betweenness, and eigenvector complexity, natural connectivity, and community stability first increased and then decreased with secondary succession. Correlation and random forest analyses indicated that secondary succession-induced stoichiometry imbalances in C:N and N:P, as well as changes in soil organic C and lignin phenols, were the key factors influencing microbial community structure and function. Overall, these results enhance our understanding of the adaptation strategies of soil microbial communities in ecologically managed regions to changes in ecosystem resources and stoichiometric imbalances.

Characterization of organic materials in regulating soil carbon sequestration of urban greenspaces: Links to microbial necromass and community composition

Application of organic material is a win-win strategy that effectively boosts soil carbon (C) storage and promotes organic waste recycling in urban ecosystems. However, the divergent responses of C sequestration to organic materials and the underlying mechanisms remain unclear. Using molecular and litterbag methods, this study examined soil organic C (SOC) content, C sequestration efficiency of organic material (CSE-organic material), microbial necromass and community composition in urban greenspaces amended with different types of organic materials. The field experiment had seven treatments: addition of green waste (GreenWaste), green waste compost (GreenWasteCompost), biogas residue (BiogasResidue), biogas residue compost (BiogasResidueCompost), peat (PEAT), biochar (BioChar), and no organic material (Control). Organic materials after 16 months application increased SOC content by 34.1–87.0% compared with the Control and presented CSE-organic material in the order: BioChar > GreenWasteCompost > PEAT > BiogasResidueCompost > GreenWaste > BiogasResidue. Aromaticity index was positively correlated with CSE-organic material, indicating that aromatic C addition had a strong capacity to enhance C sequestration. Microbial necromass increased from 2.7 g C kg−1 in the Control to 3.9–5.0 g C kg−1 under organic materials addition. Bacterial necromass was enriched in the BiogasResidue and BiogasResidueCompost treatments, primarily because of sufficient substrate that facilitated the proliferation and activity of copiotrophic Firmicutes, whereas fungal necromass was 8.8–19.1% higher in the GreenWaste, GreenWasteCompost, and PEAT treatments than that in the BiogasResidue and BiogasResidueCompost treatments, accompanying by an increasing abundance of Ascomycota. However, the contribution of microbial necromass to the increased SOC was negatively correlated with CSE-organic material, suggesting that the input of recalcitrant C weakened the role of microbial necromass in C retention. Overall, this study reveals that the efficiency of organic materials application in promoting soil C accumulation depends largely on recalcitrant C rather than microbial necromass, which highlights the important role of organic waste acting as a C source in achieving urban sustainable development.

Atributos microbiológicos em Latossolo Vermelho cultivado com cana-de-açúcar na região de cerrado do Brasil Central

ABSTRACT The contribution of plant residues throughout the sugarcane cycles favors the increase of organic matter and the activity of microorganisms in the soil, especially in the surface layers. Soil texture also has an important effect on ecological processes and soil quality. In this context, the objective of this study was to evaluate soil biological attributes in different sugarcane cultivation cycles under mechanized harvesting in an Oxisol in the Savanna region of Central Brazil. The study was conducted in commercial areas under sugarcane cultivation during the 2018/2019 season, which were considered homogeneous in terms of soil and climatic conditions, with the source of variation among the areas being the cultivation cycles (C1: one cultivation cycle; C3: three cultivation cycles; C7: seven cultivation cycles) and a savanna vegetation area selected as a reference. Microbiological variables were determined in two layers, 0-0.1 and 0.1-0.2 m. The variables related to microbial biomass and texture were subjected to principal component analysis. Areas with longer sugarcane cultivation cycles show higher proportion of microbial biomass carbon in the total organic carbon in subsurface layers (microbial quotient). The performance of the soil microbial community, as expressed by total organic carbon and microbial biomass nitrogen indicators, was associated with higher presence of clay and silt, i.e., soil particles smaller than 0.02 mm.

Straw return can increase maize yield by regulating soil bacteria and improving soil properties in arid and semi-arid areas

Straw return has been found to benefit soil fertility and crop yield, however, by which it affects microbial communities to mediate soil factors driving crop yields under maize continuous cropping systems in dryland areas is still unclear. To fill this gap, a 6-year field experiment was established with five straw return amounts (T0, T1, T2, T3, and T4, representing 0, 3,000, 6,000, 9,000, and 12,000kgha-1 of straw, respectively), and investigated the effects of on soil properties, enzymes, bacterial community composition and diversity, and crop yields. Our analysis showed that soil organic carbon (SOC), total nitrogen (TN), and total phosphorus (TP) contents significantly increased by 1-8%, 5-25%, and 2-9% under straw return treatments, respectively, compared to the T0, and soil catalase, urease, and alkaline phosphatase activities increased by at least 34.00%. Additionally, crop yield significantly increased by 4.23-12.00% under T1-T4 treatments, and showed highly significant relationships with SOC, TN, and TP. Importantly, we found straw return significantly altered the community of bacteria involved in the carbon and nitrogen cycle, and their abundance of strong responses depending on the amounts of straw return. For example, straw input increased the abundance of Proteobacteria (+2.64–5.57%), Acidobacteria (+3.82–13.83%), and Bacteroidetes (+15.37–30.49%). Similarly, the amount of straw application increased the bacterial diversity indexes (Shannon, 2.65–10.93%; Chao1, 13.47–18.50%), and had significant positive correlations with SOC, TN, and TP contents. Structural equation models (SEM) revealed that straw return management practice had positive and indirect effects on crop yields by influencing soil properties or the bacteria community. In conclusion, our findings revealed common associations and variations of bacterial community diversity with soil factors and crop yields at different straw return rates, and these findings provide insights and options for the development of better straw return strategies and sustainable agriculture in semi-arid regions.

Applying kitchen compost promoted soil chrysene degradation by optimizing microbial community structure

Chrysene, as a high molecular weight polycyclic aromatic hydrocarbon (PAH), has become an important factor in degrading soil quality and constraining the safe production of food crops. Compost has been widely used to amend contaminated soil. However, to date, the main components of kitchen compost that enhance the biodegradation of chrysene in the soil remain unidentified. Thus, in this study, the enhancing effect and mechanisms of kitchen compost (KC) and kitchen compost-derived dissolved organic matter (KCOM) on chrysene removal from soil were investigated through cultivation experiments combined with high-throughput sequencing technology. Additionally, the key components influencing the degradation of chrysene were identified. The results showed that KCOM was the main component of compost that promoted the degradation of chrysene. The average degradation rate of chrysene in 1% KC- and 1% KCOM-treated soil increased by 27.20% and 24.18%, respectively, at different levels of chrysene pollution compared with the control treatment (CK). KC and KCOM significantly increased soil nutrient content, accelerated humification of organic matter, and increased microbial activity in the chrysene-contaminated soil. Correlation analyses revealed that the application of KC and KCOM optimized the microbial community by altering soil properties and organic matter structure. This optimization enhanced the degradation of soil chrysene by increasing the abundance of chrysene-degrading functional bacteria from the genera Bacillus, Arthrobacter, Pseudomonas, Lysinibacillus, and Acinetobacter. This study provides insight into the identification of key components that promote chrysene degradation and into the microbial-enhanced remediation of chrysene-contaminated soil.

Tree species selection for optimizing soil carbon storage: Insights from litter decomposition and bacterial community analysis in coastal ecosystems

Coastal wetland ecosystems are critical sinks for atmospheric carbon dioxide, playing a vital role in global carbon cycling and climate regulation. The decomposition of leaf litter plays a crucial role in the formation and stability of soil organic carbon (SOC) in these environments. This study investigated the impact of leaf litter decomposition from five tree species (Populus deltoids, Ligustrum lucidum, Taxodium 'Zhongshanshan', Hibiscus hamabo, and Nerium oleander) on SOC dynamics, humus composition, and soil bacterial community structure in a tidal flat. Litterbags were used to monitor the mass loss and changes in litter chemical composition over 270 days. The results revealed significant differences in decomposition rates among the tree species, with Nerium oleander exhibiting the fastest decomposition and Populus deltoids the slowest. Surprisingly, initial litter chemistry did not correlate with decomposition rates; however, changes in lignin and hemicellulose content during decomposition were significantly related to mass loss. Despite its rapid decomposition, Nerium oleander litter resulted in the highest accumulation of SOC, total humus, and humin compared to the other species, challenging the conventional view that slower decomposition leads to greater SOC storage. The soil microbial community structure was significantly influenced by SOC, humus, and litter components, with distinct microbial assemblages associated with each tree species. A random forest model identified key bacterial taxa, predominantly Proteobacteria, as important predictors of SOC content, highlighting the role of bacterial diversity in regulating SOC dynamics. These findings underscore the importance of considering litter quality, decomposition dynamics, and bacterial community composition in strategies aimed at enhancing soil carbon sequestration. This study suggests that selecting tree species with rapidly decomposing litter, such as Nerium oleander, in coastal plantations can be an effective management tool for optimizing soil carbon storage, offering valuable insights for mitigating climate change impacts.

Unveiling the therapeutic potential and mechanism of inulin in DSS-induced colitis mice

Inulin has been reported to alleviate colitis. In this study, colitis patients' feces were used to simulate fermentation to demonstrate changes in the microbiota profile in the presence of inulin. We found inulin can reshape the gut microbiota profile of colitis patients, especially by altering the abundance of Faecalibacterium and Blautia. Interestingly, the subsequent co-culture with inulin demonstrated that inulin promoted the growth of these two strains of bacteria. The dextran sodium sulfate (DSS)-induced mouse model was used to examine the effect of inulin and its combination with two probiotics on colitis. Results showed that all three treatments can alleviate the clinical symptoms, including weight-losing, colon-shortening, and the Disease Activity Index (DAI) score. Further investigations showed that the administrations regulate colitis mice's pro- and anti-inflammatory cytokines, such as TNF-α, IL-1β, IL-6, IL-10, and IL-17. Also, they alter the relative abundance of Faecalibacterium and Blautia, change the short-chain fatty acids (SCFAs) profile in the cecum and colon, and improve the intestinal barrier; specifically, the intervention increased the expressions of Claudin, Occludin, Zonula Occludens (ZO)-1, and Mucin (MUC)-2 in colonic tissues, thus restoring the colonic tissue structure and morphology of colitis mice. Collectively, our results confirm that inulin can alter the colitis patients' characteristic microbial community, and they can ameliorate experimental colitis by inhibiting the TRL4/MyD88/NF-κB signaling pathway—improving the inflammatory response and enhancing the intestinal barrier. In conclusion, we propose that inulin may hold promise as a functional food therapeutic approach for the treatment of colitis.

Straw additive enhances manure compost quality by promoting diverse aerobic bacteria and unitary thermophilic fungi

Shortening the initial activation time and extending the duration of the thermophilic phase are key to improving compost product quality in cold-climate regions. This study set up three treatments that cattle manure (CM), manure with rice straw (MR), and manure with maize straw (MM) in the field with ambient temperature ranging from –6 to 7 ℃. Compared with traditional manure composting, composting with straw performed more effectively, and the effect of the addition of maize straw surpassed that of the addition of rice straw. Straw additives markedly increased the compost pile temperature and extended the thermophilic phase duration. In addition, straw addition improved compost product maturity, as indicated by the humic-like substance content, absorbance ratio, and germination index. To further illustrate this result, the microbial community structure during the composting process was studied. During the thermophilic phase, straw additives, especially maize straw, improved the formation of a diverse aerobic bacterial community and a unitary thermophilic fungal community, and promoted a stronger relationship between the bacterial and fungal communities, as revealed by co-inertia analysis. The abundance of functional genes indicated that straw addition increased the activities of organic carbon degradation and transformation. This study demonstrated the necessity of enhancing the interaction between thermophilic–aerobic bacteria and thermophilic fungi to improve compost product quality.

Bioaugmented ensiling pretreatment to improve bioconversion of sweet sorghum: Effect of bio-additives on enzymatic saccharification and biomethane potential

This study proposes a novel strategy to integrate ensiling preservation with pretreatment of sweet sorghum (SS) biomass. Bio-additives, including cellulase, xylanase, liquid anaerobic digestate (LD), and rumen fluid (RF) were applied in ensiling process to improve the silage quality, sugar production by enzymatic hydrolysis, and anaerobic biomethane production of SS. Compared with others additives, LD could alter microbial community compositions and reduce the crystallinity of SS, thus improving ensiling pretreatment performance and achieving the highest reducing sugar yield of 84.73%. The methane production of LD silages was increased by 32.84% compared with the un-ensiled SS, indicating that ensiling pretreatment with LD could be an effective strategy to achieve the trans-seasonal preservation and improving the methane production of SS. Furthermore, taking techno-economic factors into account (energy net income of 96.07 USD/ton), LD additive was recommended for the bioaugmented ensiling pretreatment and downstream methane production of SS, which also contribute to recirculate the liquid digestate from biogas plant.

Cobalt-modified digestate-derived biochar enhances kitchen waste anaerobic dry digestion: Performance, microbial mechanisms, and metabolic pathways

To achieve simultaneous in-situ high-value utilization of digestate and efficient resource recovery of kitchen waste (KW). In this work, Co-modified digestate-derived biochar (DDB-Co) was prepared for the first time, the effects of DDB-Co on KW mesophilic dry anaerobic digestion were investigated, and the underlying mechanisms were elucidated. The results showed that the specific surface area of DDB-Co increased to 98.7 m2/g, which was 37.4 % higher than that of the unmodified group (DDB). DDB-Co exhibited a dose-dependent effect on biogas production from the KW dry digestion, with the optimal dose of 4.0 g/L (calculated on a solid content) DDB-Co yielding 205.3 mL/(g·VS) of biogas, representing an 80.9 % increase compared to the CK group. However, higher doses, such as 8.0 g/L DDB-Co, reduced the cumulative biogas production. Mechanistic analysis indicated that 4.0 g/L DDB-Co facilitated the dissolution of particulate organic matter and accelerates the conversion process of volatile fatty acids (VFA) in KW, thereby preventing excessive acidification. Microbial community structure analysis revealed that DDB-Co reduced microbial richness and diversity but selectively enriched microorganisms such as Lactobacillus and Methanothrix, accelerating the direct interspecific electron transfer (DIET) reaction rate and increasing biogas production. Metagenomic analysis demonstrated that DDB-Co primarily upregulated the relative abundances of key enzymes in the acetate decarboxylation methanogenesis pathway, such as acetate kinase (ackA), phosphate acetyltransferase (pta), and acetyl-CoA synthetase (acs), enhancing biogas yield and maintaining system stability. The findings of this work expand the high-value utilization pathways for digestate and provide an alternative solution for the efficient resource recovery of KW.

Soil application potential of post-sorbents produced by co-sorption of humic substances and nutrients from sludge anaerobic digestion reject water

This study introduces a novel soil conditioning approach using humic substances (HSs) and nutrients co-recovered from reject water from sewage sludge anaerobic digestion. For the first time, HSs and nutrients were simultaneously recovered through sorption on low-cost, environmentally inert materials: natural rock opoka (OP) and waste autoclaved aerated concrete (WAAC). This innovative application of OP and WAAC as carriers and delivery agents for soil-relevant substances offers potential for resource recovery and soil conditioning. Results indicate that the post-sorption opoka (PS-OP) and post-sorption waste autoclaved aerated concrete (PS-WAAC) effectively release retained HSs at 350–480 μg g⁻1 d⁻1, respectively. These materials also show potential as NPK fertilizers, releasing 280–430 μg g⁻1 d⁻1 N-NH₄⁺, 80–150 μg g⁻1 d⁻1 P-PO₄³⁻, and 270–350 μg g⁻1 d⁻1 K⁺. Additionally, PS-OP demonstrated promising fungicide properties, reducing P. diachenii growth by 31% at a concentration of 1 g L⁻1. A two-way ANOVA indicated that the effects of PS-OP and PS-WAAC on soil physicochemical and biological parameters varied with plant species. Both post-sorbents improved the quality of soil collected from sand mining area, increasing cation exchange capacity by 7%–85% and organic matter content by 10%–58%. They also enhanced the functional potential of soil microbial communities, increasing their metabolic activities by 23%–36% in soils sown with clover and by 33%–39% in soils sown with rapeseed. An opposite effect was observed in soils sown with sorghum, suggesting these amendments may not universally act as plant biostimulants. The effectiveness of these post-sorbents in enhancing plant growth varied depending on plant species and the mineral base of the post-sorbent. PS-OP increased the total length of clover and sorghum by 41% and 36%, and their fresh biomass by 82% and 80%, respectively. In turn, PS-WAAC increased the total length of clover and sorghum by 76% and 17%, and their fresh biomass by 29% and 15%, respectively. It was notably more effective than PS-OP for rapeseed. This study proposes a strategy to decrease reliance on non-renewable resources and costly sorbents while minimizing environmental impact. It shows that PS-OP and PS-WAAC can enhance soil quality, microbial activity, and plant growth. Given their origins, these amendments are recommended for soil remediation, particularly in degraded areas. Future research should focus on optimizing their application across various plant species to maximize effectiveness.

Chronic dietary deoxynivalenol exposure interferes the intestinal microbial community structure and antibiotic resistome in laying hens

Antibiotic resistance genes (ARGs) are critical emerging pollutants that have attracted considerable attention. Deoxynivalenol (DON) is one of the most prevalent mycotoxins in cereal crops worldwide, arising severe health hazards to both humans and animals. Even if numerous researches argue in favor of a notorious influence of DON on the gut, the effects of dietary DON exposure on the ARG profile in poultry intestine remain obscure. In this study, two separate feeding experiments using Jing Tint 6 laying hens exposed to 4.5 or 9.0 mg/kg DON were performed to explore the impact of dietary DON exposure on the microbial community structure and the profiles of ARGs in the intestine via 16S rDNA sequencing and metagenomics sequencing, respectively. In addition, growth performance and intestinal barrier function were also determined to assess the feasibility of using DON-contaminated feedstuffs inappropriate for pigs' consumption in laying hens. Chronic ingestion of DON at 9.0 mg/kg did not alter zootechnical parameters. However, histomorphological impairments were observed in liver and jejunum. Additionally, metagenomic sequencing revealed that dietary DON exposure at 9.0 mg/kg level dramatically changed the gut microbial structure and shifted the ARG profile. The abundance of tetracycline ARG subtype in the layer cecum was decreased, whereas the abundance of vancomycin ARG subtype was increased upon DON exposure. Co-occurrence network analysis identified that Prevotella was the major ARG host in the intestine of laying hens. In summary, our findings demonstrated that DON-contaminated feedstuffs inappropriate for pigs' consumption should be prudently used in hen production, and shed new light on the interactions between mycotoxins and ARGs in the poultry intestine.