Microbial Carbon Research Articles

Soil Microbial Residual Carbon Accumulation Affected by Reclamation Period and Straw Incorporation in Reclaimed Soil from Coal Mining Area

Microbial residual carbon is an important component in soil carbon pool stability. Here, we tested soils collected from the early (first year, R1), middle (10 years, R10), and long-term (30 years, R30) stages of reclamation in a coal mining area in China. Two treatments with straw materials, namely maize straw + soil (S+M) and wheat straw + soil (S+W), were used for a decomposition experiment. The glucosamine and muramic acid contents were assessed. Accumulation of microbial residual C and its contribution to soil organic carbon (SOC) were analyzed at various intervals. Straw incorporation resulted in higher amino sugar accumulation than that of the control. The amino sugar content was considerably higher in R30 than that in R10 and R1; S+M and S+W showed average increases of 15 and 4%, respectively, compared to the control after 500 days. The total microbial and fungal residual C contents under S+M and S+W treatments were substantially higher than those of the control on days 33, 55, and 218 in R30. The contributions of soil microbial residues to SOC at R1, R10, and R30 were 73.77, 71.32, and 69.64%, respectively; fungal residues contributed significantly more than bacterial residues. The total amino sugars and microbial residual C content increased with increasing reclamation period. The addition of maize straw promoted the accumulation of microbial residual C, especially in the early stages of reclamation. Therefore, the addition of maize straw improved the stability of microbial carbon sources in coal mine reclamation soils.

Interpreting the differences in microbial carbon and nitrogen use efficiencies estimated by 18O labeling and ecoenzyme stoichiometry

Microbial carbon and nitrogen use efficiencies (CUE and NUE) are central to our understanding of soil C and N cycling. Although both the 18O-labeling approach and ecoenzyme stoichiometry model have been widely used to estimate microbial CUE and NUE, comparisons of the two methods are scarce. Here, we investigated soil microbial CUE and NUE of 11 locations along a forest transect in eastern China using both the 18O-approach and ecoenzyme model. We found that microbial CUE-18O and NUE-18O estimated by the 18O-approach were positively related to each other and both decreased with soil acidification and phosphorus acquisition as measured by enzyme activity. However, CUEC:N and NUEN:C, estimated by C:N stoichiometry using the enzyme model were negatively related to each other and neither showed any relationship to soil acidification or phosphorus acquisition. Finally, CUEC:P and NUEN:P estimated according to C:P stoichiometry were positively related to each other and both increased with soil acidification and phosphorus acquisition efforts. We suggest that a reason for these differences is that the 18O-approach reflects the intracellular biochemical transformation of C, N, and P while the enzyme models reflect stoichiometric imbalances between external substrates and microbial biomass, i.e., different aspects of microbial metabolism. Moreover, differences between the C:N and C:P-based enzyme models resulted from P-limitation to soil microorganisms in this system. For these reasons, microbial element use efficiencies need to be clearly defined, i.e., as derived from growth-based or soil enzyme-based measurements, and caution must be made when comparing results obtained from different methods, and under different conditions of resource availability.

Engineering hybrid conductive electrochemically active biofilms enable efficient interfacial electron transfer and syntrophic carbon metabolism

Supply of carbon-based nanomaterials (e.g., carbon nanotubes, CNTs) to develop highly conductive electrochemically active biofilms (EABs) is a potential strategy for facilitating extracellular electron transfer (EET) in bioelectrochemical systems (BESs). Understanding of the underlying CNTs-mediated EET behaviors is helpful to further advance the practical application of BESs. Here, the cognitive influence of CNTs on bioelectrocatalytic activity and electron transfer efficiency of EABs were elucidated. CNTs can be embedded into EABs to form hybrid conductive biofilms (CNTs/EABs), achieving a high current density (7.4 ± 1.40 A m−2) and excellent coulombic recovery (46.0 ± 2.70 %) over 100 days of steady operation. The supply of CNTs can mitigate the dependence of exoelectrogens (such as Geobacter) on outer membrane cytochromes (OMCs) and conductive pili due to their down-regulated genes expression in CNTs/EABs, but it can significantly improve microbial carbon metabolism because physically high-conductive CNTs can establish rapid EET pathways, which may reduce the necessity for cells to invest metabolic energy in producing conductive pili and cytochromes that are required in the absence of CNTs. Such enhancement in electron transfer rate may be caused by the interfacial interaction between OMCs and CNTs, resulting in an order of magnitude higher than in the control (5.5 ± 1.60 s−1vs. 0.28 ± 0.04 s−1) and without compromising of mass diffusion. This study provides comprehensive insight into the role of carbon-based nanomaterials in provoking interfacial electron transfer and renewable energy recovery.

Effects of ant nests on soil CH4 emissions from Syzygium oblatum communities of a secondary tropical forest.

Exploring the effects of ant nests on soil CH4 emissions in the secondary tropical forests is of great scientific significance to understand the contribution of soil faunal activities to greenhouse gas emissions. With static chamber-gas chromatography method, we measured the dry-wet seasonal dynamics of CH4 emissions from ant nests and control soils in the secondary forest of Syzygium oblatum communities in Xishuangbanna. We also examined the linkages of ant-mediated changes in functional microbial diversity and soil physicochemical properties with CH4 emissions. The results showed that: 1) Ant nests significantly accelerated soil CH4 emissions, with average CH4 emissions in the ant nests being 2.6-fold of that in the control soils. 2) The CH4 emissions had significant dry-wet seasonal variations, which was a carbon sink in the dry seasons (from -0.29±0.03 to -0.53±0.02 μg·m-2·h-1) and a carbon source in the wet seasons (from 0.098±0.02 to 0.041±0.009 μg·m-2·h-1). The CH4 emissions were significantly higher in ant nests than in control soils. The CH4 emissions from the ant nests had smaller dry-wet seasonal variation (from -0.38±0.01 to 0.12±0.02 μg·m-2·h-1) than those in the control soils (from -0.65±0.04 to 0.058±0.006 μg·m-2·h-1). 3) Ant nests significantly increased the values (6.2%-37.8%) of soil methanogen diversity (i.e., Ace and Shannon indices), temperature and humidity, carbon pools (i.e., total, easily oxidizable, and microbial carbon), and nitrogen pools (i.e., total, hydrolyzed, ammonium, and microbial biomass nitrogen), but decreased the diversity (i.e., Ace and Chao1 indices) of methane-oxidizing bacteria by 21.9%-23.8%. 4) Results of the structural equation modeling showed that CH4 emissions were promoted by soil methanogen diversity, temperature and humidity, and C and N pools, but inhibited by soil methane-oxidizing bacterial diversity. The explained extents of soil temperature, humidity, carbon pool, nitrogen pool, methanogen diversity, and methane-oxidizing bacterial diversity for the CH4 emission changes were 6.9%, 21.6%, 18.4%, 15.2%, 14.0%, and 10.8%, respectively. Therefore, ant nests regulated soil CH4 emission dynamics through altering soil functional bacterial diversities, micro-habitat, and carbon and nitrogen pools in the secondary tropical forests.

Divergent responses in microbial metabolic limitations and carbon use efficiency to variably sized polystyrene microplastics in soil

AbstractMicroplastics, considered emerging contaminants, have been accumulating excessively within soil ecosystems, conferring potentially detrimental effects with respect to soil carbon turnover and pools. As a major participant in soil carbon processes, microplastics affecting microorganisms may be one of the main agents affecting soil carbon dynamics. However, the microbial metabolism processes through which microplastics affect soil carbon dynamics remain unclear. Therefore, this study aimed to assess the impact of variously sized (1300, 800, 100, and 0.1 μm) polystyrene microplastics on soil microbial metabolism. Soil microplastics of all sizes invariably and consistently affected microbial metabolism, though nanomicroplastics (0.1 μm) stressed soil microorganisms more than micron‐microplastics. Furthermore, microplastics inhibited both microbial carbon use efficiency (CUE) and respiration, the exception being the CUE in the 1300 μm microplastics treatment. As microplastic particle size decreased, the suppressive influence of microplastics on microbial respiration was gradually lost, the inhibitory effect on microbial CUE increased steadily, and the impact on microorganisms shifted from extracellular to intracellular, with intracellular microplastics exhibiting higher toxicity than extracellular microplastics. We used stoichiometric models to provide precise projections of microbial metabolism features associated with microplastic contamination, thereby enhancing the understanding of the effects of microplastic contamination on the carbon cycle and soil ecosystem.

Impact of Winter Cover Crops on Total and Microbial Carbon and Nitrogen in Black Soil

Winter cover crops have been shown to promote the accumulation of microbial biomass carbon and nitrogen, enhance nutrient cycling, reduce erosion, improve ecosystem stability, etc. In the black soil area of Northeast China, Triticum aestivum L., Medicago sativa L., Vicia villosa Roth., Triticum aestivum L. and Medicago sativa L. mixed planting, Triticum aestivum L. and Vicia villosa Roth. mixed planting, and winter fallow fields (CK) were selected to investigate the effects of winter cover crops on soil total carbon and nitrogen and microbial biomass carbon and nitrogen. The results showed that (1) after seasonal freeze-thaw, the rate of change in SOC (−2.49~6.50%), TN (−1.54~5.44%), and C/N (−1.18~1.16%) was less than that in SMBC (−80.91~−58.33%), SMBN (−65.03~332.22%), and SMBC/SMBN (−45.52~−90.03%); (2) winter cover crops not only alleviated the negative effects of seasonal freeze-thaw, which reduces SMBC and qMBC, but also increased SMBN and qMBN; (3) there was an extremely significant (p < 0.01) positive correlation between SOC and TN, a significant (p < 0.05) negative correlation between SMBC and SMBN, and there was no significant correlation between SOC and SMBC or between TN and SMBN; (4) alkali-hydrolysable nitrogen had the greatest impact on SOC and TN, while the soil’s saturation degree had the greatest impact on SMBC and SMBN; and (5) the Triticum aestivum L. monoculture was the most effective in conserving soil microbial carbon and nitrogen. In conclusion, winter cover crops can mitigate the reduction in soil microbial biomass carbon caused by seasonal freeze-thaw and also increase the soil microbial nitrogen content in the black soil region of Northeast China, of which Triticum aestivum L. monoculture showed the best performance.

Biodiversity drives ecosystem multifunctionality in sandy grasslands?

Plant communities and soil microbiomes play a crucial role in regulating ecosystem multifunctionality (EMF). However, whether and how aboveground plant diversity, belowground soil microbial diversity and interactions with environmental factors affect EMF in sandy grasslands under climate change conditions is unclear. Here, we selected 15 typical grassland communities from the Horqin sandy grassland along temperature and precipitation gradients, using the mean annual temperature (AMT), mean annual precipitation (AP), soil temperature (ST), soil water content (SW) and pH as abiotic factors, and plant diversity (PD) and soil microbial diversity (SD) as biodiversity indicators. The effects of biodiversity and abiotic factors on individual ecosystem functions and EMF were studied. We found that PD and its components, plant species richness (SR), species diversity (PR) and genetic diversity (GD), had significant effects on aboveground biomass (AGB) and major factors involved in ecosystem nitrogen cycling (plant leaf nitrogen content (PLN) and soil total nitrogen content (STN)) (P < 0.05). Soil fungal diversity (FR) has a greater impact on ecosystem function than soil bacteria (BR) and archaea (ABR) in sandy grasslands and mainly promotes the accumulation of soil microbial carbon and nitrogen (MBC, MBN) (P < 0.05), STC and STN (P < 0.01). PD and two types of SD (FR and ABR) significantly regulated EMF (P < 0.01). Among the abiotic factors, soil pH and SW regulated EMF (P < 0.05), and SW and ST directly drove EMF (P < 0.05). PD drove EMF significantly and indirectly (positively) through soil pH and ST (P < 0.001), while SD drove EMF weakly and indirectly (negatively) through AP and PD (P > 0.05). PD was a stronger driving force on EMF than SD. These results improve our understanding of the drivers of multifunctionality in sandy grassland ecosystems.

Effects of the Replacement of Chemical Fertilizers with Organic Fertilizers in Different Proportions on Microbial Biomass and Enzyme Activities of Soil Aggregates in Gravel-Mulched Field

Gravel-mulched fields are a unique form of drought-resistant agriculture in the northwest region of China. In recent years, continuous cropping obstacles caused by the perennial cultivation of a single crop have seriously constrained the sustainable development of sand fields. This study aimed to explore the distribution patterns of different particle sizes of aggregates (&gt;2, 1–2, 0.25–1, and &lt;0.25 mm) and the relationships between their microbial biomass and enzyme activities under different organic fertilization and to explore the effective measures for improving soil fertility in a gravel-mulched field with an 8-year positioning test. The results indicate that the mass percentage of soil aggregates of ≥1 mm and their mean weight diameter (MWD), microbial biomass (carbon and nitrogen, bacteria, fungi, actinomycetes, and total phospholipid fatty acids), and their related enzyme activities (leucine aminopeptidase, LAP; N-acetyl-β-d-glucosidase, NAG; β-glucosidase, BG; and polyphenol oxidase, PPO) in aggregates of different particle sizes increased with the increase in the proportion of organic fertilizers replacing the N fertilizer. Among them, the organic fertilizer replacing more than 50% of chemical nitrogen fertilizers exerted the most significant effect. With the decrease in agglomerate particle size, the contents of microbial carbon and nitrogen showed a decreasing trend, whereas LAP, NAG, and BG activities followed an increasing trend, and the change in microbial biomass was not obvious. The correlation analysis showed highly significant positive correlations between the MWD of soil aggregates, microbial biomass, and the activities of LAP, NAG, BG, and PPO. Therefore, the replacement of more than 50% of chemical fertilizer with organic fertilizer was observed to be conducive to promoting the formation of large aggregates in sandy soils and increasing the microbial biomass and enzyme activities in different sizes of aggregates.

Soil carbon storage and accessibility drive microbial carbon use efficiency by regulating microbial diversity and key taxa in intercropping ecosystems

Soil carbon storage and accessibility drive microbial carbon use efficiency by regulating microbial diversity and key taxa in intercropping ecosystems

Controls of microbial carbon use efficiency along a latitudinal gradient across Europe

Microbial carbon use efficiency (CUE) describes the partitioning of carbon (C) between respiration and growth, and this defines the soil-atmosphere C balance. Despite its importance, CUE is not properly represented in soil biogeochemical models. Here, we estimated how CUE varied in soil along a continental gradient. Through a structural equation model, we found that bacterial growth, fungal community composition, and SOM quality were the main drivers of CUE variation. Biotic factors controlled CUE directly, while soil properties and climate indirectly controlled CUE via biotic factors. Surprisingly, we found that microbial assimilability of SOM had a negative relationship with CUE. High rates of microbial SOM-use coincided with a greater growth-fraction used for respiration suggesting decoupled catabolism and anabolism, probably due to nutrient limitation. Our study highlights the importance of the microbial community composition to predict CUE and that interactions between bacterial and fungal communities can have implications for CUE.

The microbial carbon pump and climate change.

The ocean has been a regulator of climate change throughout the history of Earth. One key mechanism is the mediation of the carbon reservoir by refractory dissolved organic carbon (RDOC), which can either be stored in the water column for centuries or released back into the atmosphere as CO2 depending on the conditions. The RDOC is produced through a myriad of microbial metabolic and ecological processes known as the microbial carbon pump (MCP). Here, we review recent research advances in processes related to the MCP, including the distribution patterns and molecular composition of RDOC, links between the complexity of RDOC compounds and microbial diversity, MCP-driven carbon cycles across time and space, and responses of the MCP to a changing climate. We identify knowledge gaps and future research directions in the role of the MCP, particularly as a key component in integrated approaches combining the mechanisms of the biological and abiotic carbon pumps for ocean negative carbon emissions.

Soil nitrogen availability and microbial carbon use efficiency are dependent more on chemical fertilization than winter drought in a maize-soybean rotation system.

Soil nitrogen (N) availability is one of the limiting factors of crop productivity, and it is strongly influenced by global change and agricultural management practices. However, very few studies have assessed how the winter drought affected soil N availability during the subsequent growing season under chemical fertilization. We conducted a field investigation involving snow removal to simulate winter drought conditions in a Mollisol cropland in Northeast China as part of a 6-year fertilization experiment, and we examined soil physicochemical properties, microbial characteristics, and N availability. Our results demonstrated that chemical fertilization significantly increased soil ammonium and total N availability by 42.9 and 90.3%, respectively; a combined winter drought and fertilization treatment exhibited the highest soil N availability at the end of the growing season. As the growing season continued, the variation in soil N availability was explained more by fertilization than by winter drought. The Mantel test further indicated that soil Olsen-P content and microbial carbon use efficiency (CUE) were significantly related to soil ammonium availability. A microbial community structure explained the largest fraction of the variation in soil nitrate availability. Microbial CUE showed the strongest correlation with soil N availability, followed by soil available C:P and bacteria:fungi ratios under winter drought and chemical fertilization conditions. Overall, we clarified that, despite the weak effect of the winter drought on soil N availability, it cannot be ignored. Our study also identified the important role of soil microorganisms in soil N transformations, even in seasonally snow-covered northern croplands.

Soil Ecoenzymatic Stoichiometry Reveals Microbial Metabolic Limitations in Apple Orchards with Cover Crop and Organic Fertilizer Incorporation

Understanding the stoichiometry of extracellular enzymes in soil, particularly in relation to nutrient acquisition (e.g., carbon, nitrogen, phosphorus), provides valuable insights into microorganisms’ resource requirements. This study investigates the metabolic constraints of soil microorganisms in response to different growth stages of apple trees under various soil management practices. A 14-year long-term experiment with a split-plot design was conducted, where the main plots received different cover crop treatments (bare vs. cover crop), and subplots were subjected to four fertilizer treatments (CK, M, NPK, MNPK). The significant main and interactive effects of cover crops, fertilizer treatment, and growth period on soil nutrients were observed (p &lt; 0.001). Both cover crop and fertilizer treatments significantly increased the soil organic matter content, with implications for orchard resilience to drought. However, the cover factor alone did not notably influence soil carbon–nitrogen ratios or microbial communities. Microbial carbon limitations were driven by soil water dynamics and microbial biomass, while microbial phosphorus limitations were closely linked to total nitrogen levels. The results underscore the combination of cover crops and MNPK fertilizer-enhanced soil nutrient levels and enzyme activities, mitigating microbial carbon and phosphorus limitations. These findings suggest practical strategies for optimizing fertilization practices to improve soil fertility and address nutrient constraints in orchard ecosystems.

Microbial Metabolic Limitation and Soil Multifunctionality Changes across Subtropical Woodlands in Southern China

Soil nutrient transformation and the microbial metabolism are primarily regulated by soil microorganisms, including fungi and bacteria, which exhibit distinct growth patterns, energy substrate utilization, and survival strategies. Despite their significance, our understanding of the key microorganisms governing the soil microbial metabolism and multifunctionality in subtropical woodlands remains limited. To address this knowledge gap, we conducted a large-scale investigation and assessment of the soil microbial metabolic limitation and soil multifunctionality in Camellia oleifera Abel and Pinus massoniana Lamb. woodlands in subtropical China. Our results reveal that the microbial phosphorus limitation was more severe in C. oleifera compared to P. massoniana woodlands. Nonetheless, the pattern of carbon metabolic limitation for microbes and soil multifunctionality was similar in both types of woodland. Specifically, the microbial carbon limitation was positively associated with both bacterial and fungal richness, while the microbial phosphorus limitation was significantly correlated with fungi including the richness and community structure in the P. massoniana woodland. By contrast, we did not observe significant correlations between microbial metabolic limitation indices and microbial parameters in C. oleifera woodlands. Regarding soil multifunctionality, the results reveal a strong positive correlation between the soil multifunctionality and fungal community in both P. massoniana and C. oleifera woodlands. Furthermore, our structural equation modeling revealed that the soil fungal community, rather than the bacterial community, had a significant effect on the microbial metabolic limitation and soil multifunctionality. Overall, our study provides profound insights into the relative importance of bacterial and fungal communities in shaping the soil microbial metabolic limitation and soil multifunctionality in subtropical woodlands. The findings of our study have important implications for the management and conservation of subtropical woodlands.

Microbial mediation of soil carbon loss at the potential climax of alpine grassland under warming

Soil in high latitude and altitude cold regions contains over half of soil organic carbon (SOC) globally, so the decomposition of these SOCs under climate warming could release huge amounts of carbon dioxide to the atmosphere, amplifying climate warming. However, it is still unclear how the SOC storages will change when the ecosystem reaches the final and stable stage (i.e., the climax) under long-term warming. This is mainly because the turnover times of SOC in cold regions exceeds hundreds or even thousands of years, much longer than the periods of simulated warming experiments. Herein we used natural geothermal warming gradients in a Tibetan alpine grassland to determine SOC changes and underlying plant and microbial mechanisms at the potential climax. SOC concentrations were significantly decreased by 21.4%–30.6% under high-level soil warming (+4∼+6 °C), but remained unchanged under low-level soil warming (+2 °C). The losses of SOC were primarily from mineral-associated organic carbon, rather than unprotected particulate organic carbon. The shifts of microbial communities and associated decline of microbial carbon use efficiency, rather than plant-driven carbon fluxes, substantially contributed to the SOC changes. This observed SOC losses at the climax of alpine grassland by high-level warming provide strong empirical support for the positive soil carbon-climate feedback in cold regions, which could not be concluded from short-term experiments or only based on ecosystem carbon fluxes alone. The divergent responses of SOC to different degrees of warming suggest that models must account for these heterogeneous carbon dynamics for projecting future climate warming scenarios.

Analysis on metabolic functions of rhizosphere microbial communities of Pinus massoniana provenances with different carbon storage by Biolog Eco microplates.

Rhizosphere microorganisms are influenced by vegetation. Meanwhile, they respond to vegetation through their own changes, developing an interactive feedback system between microorganisms and vegetation. However, it is still unclear whether the functional diversity of rhizosphere soil microorganisms varies with different carbon storage levels and what factors affect the functional diversity of rhizosphere soil microorganisms. In this study, the Biolog-Eco microplate technique was used to analyze the metabolic diversity of carbon source of rhizosphere soil microorganisms from 6 Pinus massoniana provenances with three levels of high, medium and low carbon storage. The results showed that the average well color development(AWCD) value of rhizosphere microorganisms was significantly positive correlated with carbon storage level of Pinus massoniana (p < 0.05). The AWCD value, Simpson and Shannon diversity of high carbon sequestrance provenances were 1.40 (144h incubation) 0.96 and 3.24, respectively, which were significantly higher (p < 0.05) than those of other P. massoniana provenances. The rhizosphere microbial AWCD, Shannon and Simpson diversity of the 6 provenances showed the same variation trend (SM>AY>QJ>SX>HF>SW). Similarly, microbial biomass carbon (MBC) content was positively correlated with carbon storage level, and there were significant differences among high, medium and low carbon storage provenances. The PCA results showed that the differences in the carbon source metabolism of rhizosphere microorganisms were mainly reflected in the utilization of amino acids, carboxylic acids and carbohydrates. Pearson correlation analysis showed that soil organic carbon (SOC), total nitrogen (TN) and pH were significantly correlated with rhizosphere AWCD (p < 0.05). Soil properties are important factors affecting rhizosphere microbial carbon source metabolism. The study confirmed that the microorganisms of high carbon storage provenances had relatively high carbon metabolic activity. Among them, the carbon metabolic activity of rhizosphere microorganisms of SM provenance was the highest, which was the preferred provenances in effective ecological service function.

Changes in soil microbial carbon fixation pathways along the oasification process in arid desert region: A confirmation based on metagenome analysis

Microbial carbon fixation has been proved to play a key role in soil carbon accumulation in arid desert oasis, but the fixation mechanism remains unclear. To solve it, we used metagenomic sequencing technology to measure the changes of soil microbial community structure, carbon fixation–related genes and carbon fixation pathway, as well as their relationships with soil properties between natural desert shrubbery (CK) and four oasis farmlands with different cultivation years (i.e., 3, 18 and 30 years) in the arid desert region of northwest China. The results showed that the contents of four soil carbon fraction (soil organic carbon/SOC, soil recalcitrant organic carbon/ROC, soil water solution carbon /WSC, and microbial biomass carbon/MBC) all significantly increased with the cultivation years (30 years ≥ 18 years > 6 years ≥ 3 years ≥ CK) (P < 0.05). Microbial composition was significant difference among CK, 3-, 6-, 18- and 30-years cultivated farmlands. Bacteria were the soil dominant taxa, and its relative abundance gradually decreased with the cultivation years. Proteobacteria, Actinobacteria, Bacteroidetes and Acidobacteria were the dominant phylum of soil microorganisms in desert shrubbery and oasis farmlands. Their relative abundance changed obviously with cultivation years. Six microbial carbon fixation pathways. i.e., the reductive tricarboxylic acid cycle (rTCA), dicarboxylate/4–hydroxybutyrate cycle (DC/4–HB cycle), 3–hydroxypropionate bicycle (3–HP bi–cycle), 3–hydroxypropionate/4–hydroxybutyrate cycle (3–HP/4–HB cycle), Calvin cycle and the Wood–Ljungdahl pathway (WL pathway), were found in all soils, but only the rTCA, DC/4–HB, 3–HP/4–HB cycles and WL pathway significantly changed with the cultivation years. The rTCA cycle was the most common fixation pathway, followed by DC/4–HB cycle and 3–HP/4–HB cycle, while WL pathway was least detected. Soil properties, especially pH, recalcitrant organic carbon, bulk density, total salinity and soil water contents, affected microbial community composition and carbon fixation–related genes in the oasification process. Our results suggested that oasification affected microbial carbon fixation by changing the soil environment due to human agricultural activities. Limited by energy supply in the nutrient–poor soils, rTCA and DC/4–HB cycles were mainly used by microorganisms to fix carbon in oasis farmlands.

Canopy gap impacts on soil organic carbon and nutrient dynamic: a meta-analysis

Key messageThe forest canopy gaps, formed by natural or anthropogenic factors, have been found to reduce soil carbon content and increase nutrient availability. The magnitudes of these effects have been observed to increase with gap age and size, and are largely influenced by changes in temperature, precipitation, and solar radiation.ContextLocal studies have illustrated the influence of canopy gaps on the spatial heterogeneity of soil carbon and nutrients, playing a pivotal role in driving forest regeneration and succession. Nevertheless, it remains largely unknown whether the response of soil carbon and nutrient content to gap formation is consistent across forest ecosystems at global scale.AimsThe aim of this paper is to assess the homogeneity of the observed responses of soil carbon and nutrients following gap formation among a wide array of forest ecosystems and climatic regions.MethodsWe performed a meta-analysis synthesizing 2127 pairwise observations from 52 published articles to quantify the changes in in soil physical, chemical, and microbial variables resulting from gap creation in natural forests and plantations spanning tropical to boreal regions.ResultsCanopy gaps resulted in significant decrease of soil organic carbon (Corg) and microbial carbon (Cmic). The concentrations of ammonium (NH4+), nitrate (NO3−), and available phosphorus (available P) increased following gap creation. These changes mainly occurred in the growing season and in the mineral soil layer, becoming more pronounced with increasing gap age and size. The change in Corg was negatively regulated by mean annual precipitation, and was associated with the changes in Nt and Nmic. The change in NH4+ was positively regulated by mean annual temperature, and was associated with the changes in available P and oxidoreductases (Ox-EEAs). The model explaining the change in soil carbon content exhibited a higher explanatory power than the one accounting for changes in soil nutrient availability.ConclusionThe results indicated that forest canopy gaps resulted in a reduction in soil carbon content and an increase in nutrient availability. These findings contribute to a better understanding of the role of small-scale disturbances as drivers of forest ecosystem succession.

Using biochar for environmental recovery and boosting the yield of valuable non-food crops: The case of hemp in a soil contaminated by potentially toxic elements (PTEs)

Hemp (Cannabis sativa L.) is known to tolerate high concentrations of soil contaminants which however can limit its biomass yield. On the other hand, organic-based amendments such as biochar can immobilize soil contaminants and assist hemp growth in soils contaminated by potentially toxic elements (PTEs), allowing for environmental recovery and income generation, e.g. due to green energy production from plant biomass. The aim of this study was therefore to evaluate the suitability of a softwood-derived biochar to enhance hemp growth and promote the assisted phytoremediation of a PTE-contaminated soil (i.e., Sb 2175 mg kg−1; Zn 3149 mg kg−1; Pb 403 mg kg−1; and Cd 12 mg kg−1). Adding 3% (w/w) biochar to soil favoured the reduction of soluble and exchangeable PTEs, decreased soil dehydrogenase activity (by ∼2.08-fold), and increased alkaline phosphomonoesterase and urease activities, basal respiration and soil microbial carbon (by ∼1.18-, 1.22-, 1.22-, and 1.66-fold, respectively). Biochar increased the abundance of selected soil culturable microorganisms, while amplicon sequencing analysis showed a positive biochar impact on α-diversity and the induction of structural changes on soil bacterial community structure. Biochar did not affect root growth of hemp but significantly increased its aboveground biomass by ∼1.67-fold for shoots, and by ∼2-fold for both seed number and weight. Biochar increased the PTEs phytostabilisation potential of hemp with respect to Cd, Pb and Zn, and also stimulated hemp phytoextracting capacity with respect to Sb. Overall, the results showed that biochar can boost hemp yield and its phytoremediation effectiveness in soils contaminated by PTEs providing valuable biomass that can generate profit in economic, environmental and sustainability terms.

Shifts in C-degradation genes and microbial metabolic activity with vegetation types affected the surface soil organic carbon pool

The incorporation of plant-derived biomass by microorganisms into deceased microbial biomass, i.e., a “microbial carbon pump”, is essential for forming a soil carbon (C) pool. Therefore, microbial communities and associated functions could shape the formation of soil organic C (SOC) composition and persistence. However, the mechanism by which microorganisms mediate the degradation of various types of biomass (such as plant or microbial) and its impact on SOC formation under different vegetation types remains unclear. Herein, we analyzed microbial communities, carbohydrate-activated enzymes (CAZymes), absolute quantification of C-degradation genes, and extracellular enzyme activities to track microbial-mediated SOC formation under three vegetation types on the Loess Plateau. Changes in vegetation type influenced microbial community structure and distributions of certain bacterial groups. Specifically, dominant bacterial taxa shifted from oligotrophic Actinobacteria to eutrophic Proteobacteria from grass to forest soil. The proportion of microbial CAZymes responsible for decomposing plant-derived components (86–89%) exceeded that of microbial-derived components (11–14%), suggesting a greater capacity for the degradation of deceased plant biomass by microorganisms. There was a reduction of 14%–17% in the absolute abundance of specific C-degradation genes for hemicellulose and cellulose in forest soil compared to grass, while an increase of 20%–32% was observed in lignin and chitin degradation. This indicated a higher decomposition potential of lignin and chitin by microorganisms in forest soil. The number of CAZymes genes involved in the degradation of bacteria-derived biomass (peptidoglycan) was higher than fungi-derived biomass (chitin and glucans) and had a close correlation with the qCO2, microbial biomass C (MBC), and particulate organic C (POC). The abundance of C-degrading genes increased with the increase in the corresponding enzyme activity, indicating that enzyme activity is regulated by functional genes. In conclusion, shifts in CAZymes genes encoding for the degradation of diverse carbon sources could impact microbial metabolic activity through a microbial “carbon pump” regulation process. This mechanism could facilitate the formation of soil organic carbon and its fractions across different vegetation types.