Microbial Calcification Research Articles

Use of bacterial binder in repair mortar for micro-crack remediation.

Micro-cracks are one of the types of stone deterioration which can propagate and lead to surface detachments and larger cracks in the long run. The present study developed a sustainable and environmentally friendly infill material-biological mortar (BM), as an alternative to conventional approaches. Using a biomineralization approach, this BM was explicitly designed for healing micro-cracks (less than 2 mm) in historic travertines. To this end, the mortar was prepared using a calcifying Bacillus sp. isolated from thermal spring water resources in Pamukkale Travertines (Denizli), stone powder gathered from travertine quarries in the vicinity, and a triggering solution specifically designed to set off calcium carbonate precipitation reaction. After setup, BM was applied to micro-cracks of artificially aged test stones for testing. Scanning electron microscopy revealed calcium carbonate-coated Bacillus sp. bodies in the BM matrix, optical microscopy showed secondary calcite minerals throughout the BM applied micro-cracks, and stereomicroscopy and nanoindentation analyses demonstrated bonding of BM with stone due to microbial calcification activities. Furthermore, BM and original material contact showed a continuous and coherent structure in all samples. Within this context, BM could be considered a promising and alternative approach for the remediation of micro-cracks of historic stones. KEY POINTS: A binder was produced by the MICP of Bacillus sp. Pamukkale. Physical, mineralogical, and nanomechanical characterization demonstrated microbial calcite precipitates in BM. A significant bond was determined between the grains and matrix of BM due to Bacillus sp. calcite production activities.

Calcification of cell membranes: From ions to minerals

The whole process of cell membrane calcification of Bacillus licheniformis DB1–9 was studied by molecular dynamics (MD) and microbially-induced carbonate precipitation (MICP) laboratory experiments. Typical metabolitic products of Bacillus licheniformis DB1–9 were used as the calcium carbonate nucleation template to establish the organic constituents and a water‑calcium carbonate two-phase system model for MD simulation, and to characterize the early stages of calcium carbonate nucleation on the surfaces of extracellular polymeric substances (EPS). The surface minerals of calcified bacteria obtained by MICP were prepared by focused ion-beam (FIB) and further analyzed using high-resolution transmission electron microscopy-selected area electron diffraction (HRTEM-SAED). We propose that the evolution process of cell membrane calcification is: ions → ion-pairs → multi-ion complexes (MIC) of large-size topological structures → pre-nucleated clusters (PNC) → amorphous calcium carbonate (ACC) → carbonate minerals (monohydrocalcite, vaterite, aragonite). In addition, ACC and the state before ACC were adsorbed on to the surface of the cell membrane after self-assembly in the aqueous solution; the ACC then underwent maturation and crystallized into ordered carbonate minerals with a crystal structure. Our study reveals the processes of microbial calcification, which has implications for the calcification of microorganisms in modern aqueous environments and for the formation of microbialites throughout the geological record.

TAPHONOMIC CONTROLS ON MICROBIALITE TEXTURES FROM THE STEAMBOAT POINT MEMBER, UPPER ORDOVICIAN BIGHORN DOLOMITE, WESTERN TETON MOUNTAINS, USA

ABSTRACT The Bighorn Dolomite is a massive, cliff-forming dolostone unit found across the state of Wyoming and adjacent areas that records the transition from greenhouse to icehouse conditions during the Late Ordovician. The basal Steamboat Point Member of the Bighorn Dolomite contains cm-scale mottled fabrics often attributed to the ichnogenus Thalassinoides, but their origin remains enigmatic in Upper Ordovician strata. The development of mottled fabrics may have significant implications for marine chemistry and paleoecology. We analyzed cm-scale mottled fabrics from the basal Steamboat Point Member of the western Teton Mountains to determine their origin and develop criteria for identification of similar mottled fabrics found in other Upper Ordovician strata. In vertical cross-section, massive, m-scale exposures display vertical columns (approximately 1 cm in diameter) that anastomose and maintain decimeter-scale vertical continuity. Microscopically, the columns are composed of micro-peloidal micritic textures surrounded by spar and microspar, whereas the intercolumnar matrix is composed of dolomicrite grains, skeletal clasts, and intraclasts. We interpret the microscopic peloidal texture as a product of benthic microbial calcification that coalesced to form mesoclots—diagnostic features of thrombolitic microbialites. Paragenetic analyses reveal evidence for early lithified microbial biofilms despite dolomite replacement and aggrading neomorphism. These observations indicate the Steamboat Point Member of the Bighorn Dolomite was deposited in seawater that was highly supersaturated with respect to carbonate, consistent with other studies that suggest deposition during greenhouse conditions prior to the end-Ordovician glaciation. We present a novel ternary diagram that contains criteria to help differentiate between burrows, microbialite textures, or physical processes that may result in mottled fabrics in the rock record.

Microbialite development through the Ediacaran–Cambrian transition in China: Distribution, characteristics, and paleoceanographic implications

Widespread development of microbialites harbors a series of clues about microbial activity, environmental condition, and aquatic chemistry. The Ediacaran-Cambrian transition draws extensive attention on the co-evolution of complex life and Earth's environment but the associated microorganism development has been largely ignored. In this study, we present a high-resolution database with respect to the spatial and temporal distributions of microbialites in China through the terminal Ediacaran to the early Cambrian Period and describe morphological and petrological characteristics of stromatolites and thrombolites in detail to shed light on the evolutionary process of microbial carbonates. Microbialite development experienced two thriving intervals during the Ediacaran-Cambrian transition: latest Ediacaran to early Fortunian, and Cambrian Age 3 to middle Age 4. The columnar and domical stromatolites show no marked morphological changes in the Ediacaran-Cambrian transition, but stratiform stromatolites exhibit a notable decline in Cambrian time, likely caused by increasing bioturbation in the Cambrian shelf environments. Meanwhile, thrombolites evolved to form large and complicated structures in the early Cambrian featured by meter-level mound morphology and columnar-branching microbial forms (fan-like/dendritic structures), likely indicating an improved environmental adaptation (e.g., photosynthesis efficiency and hydrodynamic conditions). Another remarkable change in microbialites is the emergence of large numbers of calcified microbial microfossils preserved within the laminated/clotted mesostructures in Cambrian facies, compared with the Ediacaran forms that lack such unique structural features. For the main control over the Cambrian microbial calcification event, this study stresses again the essential role of seawater chemistry (Mg/Ca molar ratios and Ca 2+ concentrations) in the formation and preservation of calcified microorganisms based on previous insights and elaborate characteristics of their occurrence and microstructures in China. The transition of the Neoproterozoic “aragonite-dolomite sea” to the Cambrian “calcite sea” (likely widely distributed in Age 3) may have promoted to the generation of an original calcite mineralogy in microbial fossils, which has a stronger ability to resist diagenetic dissolution and substitution (e.g., phosphatization and silicification) than that of the aragonite precursor. • We present a high-resolution database with respect to the development of microbialites in China through the E-C transition. • Detailed morphological and petrological characteristics of stromatolites and thrombolites are described. • Microbialite development experienced two thriving intervals in China during the E-C transition. • Thrombolites evolved to form large and complicated structures, likely indicating an improved environmental adaptation. • The primary calcite mineralogical composition is one potential reason for the preservation of the calcified microfossils.

Development of Middle Cambrian leiolitic bioherms dominated by calcified microbes: A case study of the Xinji Section (North China Platform)

Among the varieties of microbial carbonate rocks, leiolites are rare in ancient rock records and have only few examples in the modern environment, which makes them difficult to study. This study documents the sedimentary environment, characteristics and composition of microbial carbonates, dominated by calcified microbes, which developed in the Cambrian Miaolingian Xuzhuang Formation on the North China Platform. The upper part of the formation in the Xinji section of Lushan City, Henan Province is bounded by a drowning-unconformity surface of a third-order depositional sequence. Beside the development of an ooid shoal in response to sea-level fall, a bioherm dominated by leiolite also developed in the upper part of the Xuzhuang Formation. These leiolites represent special sedimentary phenomena due to their occurrence with high-energy ooid shoals. Microscopically, they are characterized by abundant calcified cyanobacteria fossils, such as dichotomous-branching Epiphyton and filamentous cyanobacteria, thus showing the diversity and complexity of the cyanobacterial microbial mats that predominate the leolitic bioherm. Four groups are confirmed for Epiphyton based on the morphological characteristics of calcified filaments. The filamentous cyanobacteria can be divided into Girvanella and Subtifloria , and their possible forming mechanisms are discussed. The macroscopic and microscopic characteristics of the current leiolites provide important research clues and typical examples for understanding the origin of the Miaolingian leiolitic bioherm and its paleoenvironmental significance. • The Cambrian leiolitic bioherm developed in a high-energy environment during a drop in sea-level on the North China Platform. • The present study delineates the chambered, shrub-like Epiphyton and filamentous cyanobacteria (Girvanella and Subtifloria) • The microbial calcification occurred prior to early diagenesis, thus opposing the possibility of Epiphyton as a “diagenetic fossil”.

Symbiolite formation: a powerful in vitro model to untangle the role of bacterial communities in the photosynthesis-induced formation of microbialites.

Microbially induced calcification is an ancient, community-driven mineralisation process that produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by calcifying co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display either distinct symbiolite-producing (SP) or non-symbiolite-producing (NP) phenotypes. Using Illumina sequencing, we found that the bacterial communities of SP and NP cultures differed significantly in the relative abundance of 23 genera, 14 families, and 2 phyla. SP cultures were rich in biofilm digesters from the phylum Planctomycetes and their predicted metagenomes were enriched in orthologs related to biofilm formation. In contrast, NP cultures were dominated by biofilm digesters from the Bacteroidetes, and were inferred as enriched in proteases and nucleases. Functional assays confirmed the potential of co-cultures and bacterial isolates to produce biofilms and point at acidic polysaccharides as key stimulators for mineral precipitation. Hence, bacteria appear to influence symbiolite formation primarily through their biofilm-producing and modifying activity and we anticipate that symbiolite formation, as a low-complexity in vitro model, will significantly advance our understanding of photosynthesis-induced microbial calcification processes.

Late Ediacaran Boxonia-bearing stromatolites from the Gobi-Altay, western Mongolia

A couplet comprising a Boxonia-bearing stromatolite unit and phosphatic layers occurs widely at the base of the Zuun-Arts Formation in the Zavkhan Terrane of Gobi-Altay Province, western Mongolia. The stromatolite unit is late Ediacaran in age and forms bioherms of several kilometres in lateral extent. The stromatolites consist of two parts: the lower columnar Boxonia stromatolites (ca. 7 m thick) change abruptly into the upper domed stromatolites (ca. 4.5 m thick) in the Bayan Gol Gorge. The columnar stromatolites are made up of columnar structures (2–6 cm in diameter), formed by the accumulation of upward-convex laminae, and partly protrude laterally to form bridges between neighbouring columns. In contrast, the domed stromatolites (30–60 cm in width) are composed of accumulations of low convex laminae. Both types of stromatolite are characterized by alternating darker and lighter laminae, which consist of peloids, two types of micritic clot, homogeneous lime mud, and spar-filled fenestral fabrics. These stromatolites are inferred to have been deposited in a subtidal setting below the wave base, with no evidence of sediment displacement by strong currents. The stratigraphic transition from columnar to domed growth forms reflects deepening of the basin. The change in column diameter observed within the columnar stromatolites might reflect fluctuations in microbial activity. The appearance of inter-columnar bridges in the columnar stromatolites might indicate more active colonization of microbial mats, which expanded into the inter-columnar areas. Neither type of stromatolite includes microbial remains, such as filamentous or coccoidal cells. However, the various micritic components of the stromatolites (clots, peloids, and homogeneous lime mud) originated from in situ precipitation through microbial activity, and reflected differences in the timing and intensity of microbial calcification and degradation. These stromatolites, including the variety of micritic components, may provide clues to the variations in microbial metabolic activity and degradation processes that were associated with stromatolite formation.

Applicability of Microbial Calcification Method for Sandy-Slope Surface Erosion Control

AbstractSurface soil erosion is one of the most common slope degradation processes. In this study, microbial calcification (MC), a stimulated natural biocementation process, was investigated for it...

Experimental micropedology—A technique for investigating soil carbonate biogenesis along a desert-grassland-forest transect, New Mexico, USA .

Manipulative experiments—characterized by the comparing treatments to controls—are widespread in scientific investigations. This study uses experimental micropedology to investigate whether soil microbes precipitate carbonate if a liquid growth-medium is applied to soil in situ. This was undertaken using apparatuses designed to (1) obtain micromorphological images of biogenic carbonate on microscope slides, (2) to quantify carbonate formation in fiberglass cloths, and (3) to measure associated carbon-isotope fractionations. The apparatuses were buried and harvested at monthly intervals from December 2010 to June 2011. The study was conducted along an ecological transect in New Mexico, USA, at three sites: a low-elevation desert (C3 shrubs), an intermediate-elevation steppe (C4 grasses), and a high-elevation forest (C3 conifers). In addition to comparing bioclimatic zones, the effect of parent material was also tested using paired limestone and igneous soils at each site. Microscope slides were analyzed with binocular, petrographic, and scanning electron microscopy equipped with an x-ray microanalyser (EDS), and the fiberglass traps were analyzed with x-ray diffraction and a mass spectrometer for carbon concentrations and isotope ratios. Naturally occurring calcified microbes were found at each site in the form of calcified hyphae, needle fiber, and calcified root hairs, with the exception of the forest site on igneous parent material. Liquid growth medium induced microbial calcification regardless of whether the vegetation was desert shrubs, grassland, or forest, and regardless of whether the parent material was igneous or limestone. Thus, the ability of soil microorganisms to biomineralize carbonate when supplied with liquid growth medium in situ is a phenomenon that crosses biomes and is not limited to microbes endemic to either limestone or igneous parent material.

Organic and mineral imprints in fossil photosynthetic mats of an East Antarctic lake.

Lacustrine microbial mats in Antarctic ice-free oases are considered modern analogues of early microbial ecosystems as their primary production is generally dominated by cyanobacteria, the heterotrophic food chain typically truncated due to extreme environmental conditions, and they are geographically isolated. To better understand early fossilization and mineralization processes in this context, we studied the microstructure and chemistry of organo-mineral associations in a suite of sediments 50-4530cal.years old from a lake in Skarvsnes, Lützow Holm Bay, East Antarctica. First, we report an exceptional preservation of fossil autotrophs and their biomolecules on millennial timescales. The pigment scytonemin is preserved inside cyanobacterial sheaths. As non-pigmented sheaths are also preserved, scytonemin likely played little role in the preservation of sheath polysaccharides, which have been cross-linked by ether bonds. Coccoids preserved thylakoids and autofluorescence of pigments such as carotenoids. This exceptional preservation of autotrophs in the fossil mats argues for limited biodegradation during and after deposition. Moreover, cell-shaped aggregates preserved sulfur-rich nanoglobules, supporting fossilization of instable intracellular byproducts of chemotrophic or phototrophic S-oxidizers. Second, we report a diversity of micro- to nanostructured CaCO3 precipitates intimately associated with extracellular polymeric substances, cyanobacteria, and/or other prokaryotes. Micro-peloids Type 1 display features that distinguish them from known carbonates crystallized in inorganic conditions: (i) Type 1A are often filled with globular nanocarbonates and/or surrounded by a fibrous fringe, (ii) Type 1B are empty and display ovoid to wrinkled fringes of nanocrystallites that can be radially oriented (fibrous or triangular) or multilayered, and (iii) all show small-size variations. Type 2 rounded carbonates 1-2μm in diameter occurring inside autofluorescent spheres interpreted as coccoidal bacteria may represent fossils of intracellular calcification. These organo-mineral associations support organically driven nanocarbonate crystallization and stabilization, hence providing potential markers for microbial calcification in ancient rocks.

Late Jurassic Epiphyton-like cyanobacteria: Indicators of long-term episodic variation in marine bioinduced microbial calcification?

Epiphytaceans occur in Late Jurassic shallow-marine reef limestones at several localities in the Carpathian Mountains of Romania. These calcified dendritic microfossils are well-preserved in sparry calcite as sub-millimetric radial clusters of narrow well-defined filaments, 10–30μm in diameter that show dichotomous branching and consist of dense dark micrite, locally with tubiform structure. Epiphytaceans are widely interpreted as photosynthetic algae or bacteria, but their precise affinities remain elusive and the group may be heterogeneous. These Late Jurassic examples most closely resemble Cambrian Tubomorphophyton and Late Devonian Paraepiphyton. We interpret them to be calcified cyanobacterial sheaths. Post-Devonian records of epiphytaceans are extremely scarce. The Kimmeridgian–Tithonian specimens reported here represent one of the youngest known occurrences of epiphytaceans. Their highly sporadic geological distribution resembles that of marine calcified cyanobacteria, which show Phanerozoic abundance peaks in the Early Paleozoic, Late Devonian–Mississippian, and Late Jurassic–Early Cretaceous. We propose that Kimmeridgian–Tithonian epiphytacean cyanobacteria reflect environmental conditions that favored bioinduced calcification, in particular elevated seawater carbonate saturation state.

The oyster enigma variations: a hypothesis of microbial calcification

Oysters, whose inner shell layer contains chambers, vesicles, and sometimes chalky deposits, often have extraordinarily thick shells of large size, prompting the idea that there is something unusual about the process of shell fPormation in these and similarly structured bivalves with the oyster syndrome. I propose the hypothesis that calcifying microbes, especially sulfate-reducing bacteria growing on organic substrates in fluid-filled shell-wall chambers, are responsible for shell calcification away from the shell-secreting mantle of the host bivalve. Other phenomena, including the formation of cameral deposits in fossil cephalopods, the cementation of molluscs and barnacles to hard substrata, the formation of a calcified intriticalx on the shell's exterior, and cementation of objects by gastropods on the shell for camouflage, may also involve calcifying bacteria. Several lines of inquiry are suggested to test these hypotheses.

Biocalcification using B. pasteurii for strengthening brick masonry civil engineering structures

Microbiologically induced calcite precipitation in bricks by bacterium Bacillus pasteurii (NCIM 2477) using a media especially optimized for urease production (OptU) was demonstrated in this study. Effect of biocalcification activity on compressive strength and water absorption capacity of bricks was investigated. Various other parameters such as pH, growth profile, urease activity, urea breakdown and calcite precipitated were monitored during the 28 days curing period. Efficiency of B. pasteurii to form microbial aided calcite precipitate in OptU media resulted into 83.9% increase in strength of the bricks as compared to only 24.9% with standard media, nutrient broth (NB). In addition to significant increase in the compressive strength, bricks treated with B. pasteurii grown in OptU media resulted in 48.9 % reduction in water absorption capacity as compared to control bricks immersed in tap water. Thus it was successfully demonstrated that microbial calcification in optimized media by Bacillus pasteurii has good potential for commercial application to improve the life span of structures constructed with bricks, particularly structures of heritage importance.

Formation and diagenesis of modern marine calcified cyanobacteria

Calcified cyanobacterial microfossils are common in carbonate environments through most of the Phanerozoic, but are absent from the marine rock record over the past 65 Myr. There has been long-standing debate on the factors controlling the formation and temporal distribution of these fossils, fostered by the lack of a suitable modern analog. We describe calcified cyanobacteria filaments in a modern marine reef setting at Highborne Cay, Bahamas. Our observations and stable isotope data suggest that initial calcification occurs in living cyanobacteria and is photosynthetically induced. A single variety of cyanobacteria, Dichothrix sp., produces calcified filaments. Adjacent cyanobacterial mats form well-laminated stromatolites, rather than calcified filaments, indicating there can be a strong taxonomic control over the mechanism of microbial calcification. Petrographic analyses indicate that the calcified filaments are degraded during early diagenesis and are not present in well-lithified microbialites. The early diagenetic destruction of calcified filaments at Highborne Cay indicates that the absence of calcified cyanobacteria from periods of the Phanerozoic is likely to be caused by low preservation potential as well as inhibited formation.

Nucleation of calcium carbonate on bacterial nanoglobules

Nucleation of calcium carbonate on microbial cell material may have been the dominant mode of microbial carbonate formation during most of Earth's history. Current knowledge predicts that nucleation takes place on the cell surface or on extracellular polymeric substances. However, the initial nucleation steps have not been described in detail and the process remains elusive. Here we describe the bacterial nucleation of calcium carbonate at the nanometer scale. In our precipitation experiment with sulfate reducing bacteria (SRB), the bulk of calcium carbonate precipitates on hundreds of individual globules 60– 200 nm in diameter. Globules originate from the SRB cell surface but calcify significantly only when released to the culture medium. Similar globules have been observed, albeit at a much larger scale, in other bacterial precipitation experiments and in many natural microbial carbonates, suggesting that the process we describe could be an important step in microbial calcification.

Scanning transmission X‐ray microscopy study of microbial calcification

ABSTRACTCalcium phosphates and calcium carbonates are among the most prevalent minerals involved in microbial fossilization. Characterization of both the organic and mineral components in biomineralized samples is, however, usually difficult at the appropriate spatial resolution (i.e. at the submicrometer scale). Scanning transmission X‐ray microscopy (STXM) was used to measure C K‐edge, P L‐edge, and Ca L‐edge near‐edge X‐ray absorption fine structure (NEXAFS) spectra of some calcium‐containing minerals common in biomineralization processes and to study the experimental biomineralization by the model microorganism, Caulobacter crescentus. We show that the Ca L2,3‐edges for hydroxyapatite, calcite, vaterite, and aragonite are unique and can be used as probes to detect these different mineral phases. Using these results, we showed that C. crescentus cells, when cultured in the presence of high calcium concentration, precipitated carbonate hydroxyapatite. In parallel, we detected proteins, polysaccharides, and nucleic acids in the mineralizing bacteria at the single‐cell scale. Finally, we discussed the utility of STXM for the study of natural fossilized microbial systems.

Tepee‐shaped agglutinated microbialites: an example from a Famennian carbonate platform on the Lennard Shelf, northern Canning Basin, Western Australia

AbstractDistinctive, metre‐scale antiformal structures are well developed in a Famennian carbonate platform in the Chedda Cliffs area of the Lennard Shelf reef complexes. The structures are distinguished by chevron‐shaped crests and thickened cores and contain abundant non‐skeletal allochems (ooids/pisoids, peloids and intraclasts) of silt to pebble size and variably developed laminations and fenestrae. The internal morphology and pervasive occurrence of fenestral clotted and wavy laminated fabrics suggest that these structures are microbial mounds composed of agglutinated stromatolites and thrombolites. Microbial fabrics most probably originated through sediment trapping and binding by microbial mats with early lithification involving microbial calcification and cementation of trapped sediment. The facies and stratigraphic context of the mounds support a shallow subtidal, transitional backreef to reef‐flat setting; however, alone these mounds do not provide unequivocal environmental information. Other large antiformal structures in Famennian platforms on the Lennard Shelf, previously described as tepee structures, show morphological similarities to the Chedda Cliffs mounds, which suggests that these other structures may also be microbial mounds. The presence of microbial mounds in platform successions further highlights the importance of microbial communities in the Lennard Shelf reef complexes.

Balance between microbial calcification and metazoan bioerosion in modern stromatolitic oncolites

ABSTRACTStromatolites date back some 3.5 billion years and constitute the most common and conspicuous fossils through the Proterozoic. These organosedimentary structures decreased dramatically in diversity and abundance by the late Neoproterozoic, a phenomenon often ascribed to destructive grazing by newly evolved metazoans. We investigated the concurrent processes of microbial calcification and metazoan bioerosion in one of the few locations (Rio Mesquites, Cuatro Ciénegas, Coahuila, Mexico) where living freshwater stromatolites, formed by cyanobacteria and diatoms, coexist with significant populations of metazoan grazers. We used microsensor chemical profiling and monitoring of bulk water Ca2+concentrations to determine calcification rates and their dependence on microbial metabolism. The bioerosive impact resulting from grazing by endemic hydrobiid gastropods was assessed by gravimetric quantification of carbonaceous faecal pellet production. Calcification was clearly light‐dependent, reaching maximal rates (saturation) at low incident light intensity, and was surprisingly efficient, with O2/Ca2+exchange ratios well above unity, and with absolute rates similar to those found in corals. However, the erosive action of grazing snails removed most of these carbonate inputs from the oncolites. Thus, a precarious balance between constructive and destructive geobiological processes was at play in the system. The fact that accretion barely exceeded bioerosion in an environment highly conducive to calcification supports the potential impact of faunal grazing as causal agent in the demise of stromatolites in the late Proterozoic. Our findings indicate that a search for fossil evidence of bioerosive grazing in the form of carbonaceous faecal pellets associated with fossil stromatolites may provide a means to test that hypothesis directly.

Microbial Calcification: Implications for Marine Whitings and Inorganic Carbon Cycling

Microbial calcification has been identified as a significant source of carbonate sediment production in modern marine and lacustrine environments around the globe. This process has been linked to the production of modern whitings and large, micritic carbonate deposits throughout the geological record. Recent research has advanced our understanding of the microbial calcification mechanism as a photosynthetically driven process. However, little is known of the effects of this process on inorganic carbon cycling or of the effects of changing atmospheric CO2 concentrations on microbial calcification mechanisms.

Coral Reefs and Shoreline Sedimentation: Bathtub Rings around the Sea

Deep sea and ice cores show that sea level and thus global temperature fluctuated often during the past 1.8 million years. Fossil coral reefs, tidal flats, and beaches are precise indicators of former sea level. Although large fluctuations are indicated by the geologic record, this paper focuses on the younger well-documented fluctuations recorded by coral reefs and shoreline deposits that accumulated during the past 140,000 years. During this relatively short period, fossil coral species and depositional processes have remained unchanged and diagenetic alteration of fossils and sediments was minimal. Coral reefs and shoreline accumulations were selected as sea-level indicators for two reasons: (1) they serve as bathtub rings and/or dipsticks for determining former sea levels, and (2) human activity had no influence on the sea in which they grew or accumulated. Emergent coral reefs worldwide suggest that global sea level was at least 6 m above present during isotope stage 5e ∼120 ka. Drowned coral reefs and oolitic beaches indicate sea level was ∼100 m below present during stage 2 as little as 12 ka. As many as eight sea-level fluctuations occurred between stages 2 and 5e, each of which was greater than those projected to result from burning fossil fuels. Ice core data suggest even more fluctuations between stages 5a and 5e. Because the record is written in stone, geologists, especially sedimentologists, should be well qualified to make future predictions. Geologists have for the most part been excluded from official decision making. Direct measurements of air:sea CO2 gas fluxes and carbonate sediment production rates were measured in whitings located on the Great Bahama Bank and in laboratory cultures of calcifying cyanobacteria and unicellular green algae. In situ gas flux measurements showed a reduction in atmospheric CO2 relative to adjacent waters outside of whitings. Similar results were also observed in laboratory cultures. Calcification rates in whitings and laboratory cultures ranged from ∼0.06 to 34.5 g CaCO3m−3hr−1. These results suggest that production of microbial carbonates may serve as a sink for inorganic carbon. Laboratory cultures of calcifying microbes were subjected to biological buffers to examine the role of photosynthetic uptake of inorganic carbon species in calcification. Results from these experiments indicate that microbial calcification mechanisms depend upon the species of inorganic carbon available to cells for photosynthesis and, thus, atmospheric CO2 concentrations. These results suggest fluctuations in Phanerozoic dominance trends for calcareous cyanobacteria and algae may be linked to fluctuations in atmospheric CO2.