Microbial By-products Research Articles

Decomposition and humification process of domestic biodegradable waste by black soldier fly (Hermetia illucens L.) larvae from the perspective of dissolved organic matter

Black soldier fly larvae (Hermitia illucens L.) (BSFL) bioconversion is a promising technology for domestic biodegradable waste (DBW) management and resource recovery. However, little is known about the DBW biodegradation during the BSFL bioconversion from the perspective of dissolved organic matter (DOM). In the current study, field tests were conducted on a full-scale BSFL bioconversion facility with treatment capacity of 15 tons DBW/day. Composition of DOM in DBW were investigated by spectral analysis (UV–vis, fluorescence, and Fourier Transform Infrared spectroscopy (FT-IR)), coupled with enzyme activity analysis. After BSFL bioconversion, DOM concentrations, total carbon and total nitrogen in residues decreased by 51.5%, 18.3% and 19.9%, respectively. Meanwhile, enzymes like catalase, lipase, protease, sucrase, urease and cellulase significantly increased (9.28%–56.3%). The specific UV absorbance at 254 nm and 280 nm (SUVA254, SUVA280), the area at 226–400 nm (A226-400) and slope in the 280–400 nm region (S280-400) of DOM increased by 230%, 186%, 143% and 398%, respectively. Moreover, the characteristic peaks at 1636, 1077 and 1045 cm−1 in FT-IR increased continuously, with a significant decrease in peak at 1124 and 1572 cm−1. DOM spectral data show that BSFL decomposed the carboxylic, cellulose and aliphatic components, resulting in the increase of oxygen-containing functional groups (e.g., hydroxyl, carboxyl, carbonyl) and aromatic compounds. Furthermore, fluorescence profiles show that Region Ⅰ, Ⅱ (aromatic proteins) and Ⅳ (soluble microbial byproducts) decreased while Region Ⅴ (humic-like substances) increased significantly. Humification index increased by 122% while biological index decreased by 18.0%, indicating a significant increase in degree of humification and stabilization of the residues. The current evidence provides a theoretical basis for technical re-innovation and improving economic potential of BSFL technology.

Biochar derived from hydrolysis of sewage sludge influences soil properties and heavy metals distributed in the soil.

Sewage sludge contains a large number of nutrients and dangerous substances, when sludge was processed into sludge hydrochar that was added to the soil, which not only solve the problem of sludge disposal, but also amend the soil and fix pollutants in the soil. However, it was lack of report on the effect of the sludge hydrochar on soil compositions and soil microorganism community structures until now. In the present study, the hydrothermal carbonization method is used to prepare hydrochar from sewage sludge at temperatures of 180℃ and 240℃ at durations of 6h and 15h in this paper. The effects of the prepared sludge hydrochar on soil-derived dissolved organic matter (DOM), the content of total dissolved nitrogen (TDN) and NO3--N in soil, and the community structure of soil bacteria and fungi were evaluated. Furthermore, the change rules in heavy metal speciation in soils treated with sludge hydrochar were investigated. With the increase in the preparation temperature and dosage of sludge hydrochar, the main components of DOM changed from soluble microbial byproducts to fulvic acid-like and humic acid-like fractions through UV and fluorescence characterization. The sludge hydrochar prepared at low temperature could significantly increase the contents of TDN and NO3--N in the soil. Affected by sludge hydrochar, the dominant phylum of the bacterial community changed from Proteobacteria to Actinobacteria, and the dominant phylum in the fungal community did not change, but its relative abundance increased. Finally, the sludge hydrochar obtained when the carbonization time was 15h was more beneficial to reduce the total amount and available content of heavy metals in the soil. The study provides a basis for sludge hydrochar application for the soil amendment.

GROUND WATER QUALITY ASSESSMENT IN INDUSTRIAL ZONES OF CENTRAL PUNJAB, PAKISTAN


 
 
 Solid and liquid waste generation has increased tremendously in this era of industrialization. A large amount of domestic and industrial waste is disposed off without segregation practices. Inadequate waste management practices and lack of technologies endure contamination of ground water table, surface water resources and water supply infrastructure. The heavy metals and microbial byproducts present in leachates which deteriorate ground water quality and consequent health effects are prevalent and ever-increasing in industrial urban areas of Pakistan. The current study assesses the effects of leachate on water from open dumping sites of two cities (Gujranwala and Sialkot) during pre- and post-rain season. We have collected and analyzed ground water samples for the assessment of metals and compared with global and national quality standards. It was found that most of the pre-rain samples had pH value near to or higher than WHO/NEQS standards in both cities, while TDS, EC, hardness, nitrate, sulfates, chlorides and phosphates concentrations were found to be within WHO/NEQS permissible standards. The heavy metals (Zn, Fe, Cu, Cr, Ni, Cd, Co and Pb) were detected in higher concentration than NEQS/WHO standards, which was an indication of detrimental effects on ground water quality. It has been detected that all parameters had significantly increased and the concentration of most of the metals were above WHO standards in post rainfall season,. Increase in concentration of heavy metals especially, Cd, Zn, Fe, Cr, Cu, and Ni was the indication of deleterious effects on ground water quality originated from dumping sites. Hence it is deduced from the study that continuous disposal off all categories of solid waste in open dump sites could not only result in degradation of water quality but such a higher level of contamination could have damaging effects on human health and other organisms.
 
 

Utilizing Soil Density Fractionation to Separate Distinct Soil Carbon Pools.

Soil organic matter (SOM) is a complicated mixture of different compounds that span the range from free, partially degraded plant components to more microbially altered compounds held in the soil aggregates to highly processed microbial by-products with strong associations with reactive soil minerals. Soil scientists have struggled to find ways to separate soil into fractions that are easily measurable and useful for soil carbon (C) modeling. Fractionating soil based on density is increasingly being used, and it is easy to perform and yields C pools based on the degree of association between the SOM and different minerals; thus, soil density fractionation can help to characterize the SOM and identify SOM stabilization mechanisms. However, the reported soil density fractionation protocols vary significantly, making the results from different studies and ecosystems hard to compare. Here, we describe a robust density fractionation procedure that separates particulate and mineral-associated organic matter and explain the benefits and drawbacks of separating soil into two, three, or more density fractions. Such fractions often differ in their chemical and mineral composition, turnover time, and degree of microbial processing, as well as the degree of mineral stabilization.

Tertiary treatment of bio-treated landfill leachate by a two-step electrochemical process including electrooxidation and electrocoagulation: a bench-scale trial.

A two-step electrochemical process including electrooxidation (EO) and electrocoagulation (EC) was proposed for the tertiary treatment of bio-treated landfill leachate (BTLL). The operating conditions of sole EO and EC technology were optimized via batch tests. Batch tests indicate that EO displayed superior removal efficiency towards color (89%) and UV254 (64%) under optimal experimental conditions. EC with the electrode combinations Fe-Fe-Fe-Fe (four plates, anode-cathode-anode-cathode) performed better than the other electrode combinations (Fe-Al-Fe-Al, Al-Fe-Al-Fe, Al-Al-Al-Al) and showed excellent removal efficiency towards COD (60%) and color (85%). In continuous-flow tests of 13h, compared to sequential EC-EO process, the sequential EO-EC process was more effective than the sequential EC-EO process in reducing organic matters (COD, TOC) and residual chlorine. The sequential EO-EC process could remove 50% COD, 55% TOC, 72% UV254, and 96% color. The average concentration of residual chlorine in the final effluent of EO-EC process (147mg/L) was significantly lower than that of EC-EO process (463mg/L). UV-vis and GC-MS analyses indicate that the BTLL mainly contained humic acid and fulvic acid-like substances with unsaturated bonds. Conjugated unsaturated organics could be degraded into organic of small molecular weight after the sequential EO-EC process. EEM spectroscopic analysis revealed that soluble microbial byproducts became the predominant organics in the final effluent. This work verifies the synergism between EO and EC and provides some insights into the removal and degradation performance of organic substances in BTLL during the sequential EO-EC treatment.

An AI-based approach for detecting cells and microbial byproducts in low volume scanning electron microscope images of biofilms.

Microbially induced corrosion (MIC) of metal surfaces caused by biofilms has wide-ranging consequences. Analysis of biofilm images to understand the distribution of morphological components in images such as microbial cells, MIC byproducts, and metal surfaces non-occluded by cells can provide insights into assessing the performance of coatings and developing new strategies for corrosion prevention. We present an automated approach based on self-supervised deep learning methods to analyze Scanning Electron Microscope (SEM) images and detect cells and MIC byproducts. The proposed approach develops models that can successfully detect cells, MIC byproducts, and non-occluded surface areas in SEM images with a high degree of accuracy using a low volume of data while requiring minimal expert manual effort for annotating images. We develop deep learning network pipelines involving both contrastive (Barlow Twins) and non-contrastive (MoCoV2) self-learning methods and generate models to classify image patches containing three labels-cells, MIC byproducts, and non-occluded surface areas. Our experimental results based on a dataset containing seven grayscale SEM images show that both Barlow Twin and MoCoV2 models outperform the state-of-the-art supervised learning models achieving prediction accuracy increases of approximately 8 and 6%, respectively. The self-supervised pipelines achieved this superior performance by requiring experts to annotate only ~10% of the input data. We also conducted a qualitative assessment of the proposed approach using experts and validated the classification outputs generated by the self-supervised models. This is perhaps the first attempt toward the application of self-supervised learning to classify biofilm image components and our results show that self-supervised learning methods are highly effective for this task while minimizing the expert annotation effort.

Dissolved organic matter evolution can reflect the maturity of compost: Insight into common composting technology and material composition

Dissolved organic matter (DOM) can clearly reflect composting components changes, thus it is supposed to indicate the humification process during composting. To demonstrate this, three compost mixtures and two techniques were arranged. DOM evolution was detected by three spectral techniques. X-ray diffraction (XRD) showed that the crystal structure substances decreased gradually during the composting, including cellulose, struvite, sylvine, quartz, and calcite; Specifically, the struvite was found, which was conducive to the fixation of nitrogen and phosphorus. Fourier transform infrared spectroscopy (FTIR) and three-dimensional fluorescence spectroscopy (3D-EEM) further showed that pig manure-based mixtures, added cabbage, and windrow composting are beneficial to sugar, protein, fulvic acid, and soluble microbial by-products decompose and humic acids produce. This process was closely related to the change of physical-chemical parameters (temperature; pH; moisture content; and NH4+-N content) and maturity index (C/N ratio, E4/E6 and GI). Therefore, DOM evolution could quickly reflect the maturity process of compost. In subsequent research, the quantitative analysis of DOM components can be considered to modify DOM spectral parameters, or to build a model, so as to achieve rapid evaluation of compost maturity.

The Effect of Amino Sugars on the Composition and Metabolism of a Microcosm Biofilm and the Cariogenic Potential against Teeth and Dental Materials.

Amino sugars N-acetylglucosamine (GlcNAc) and glucosamine (GlcN) are abundant sources of carbon and nitrogen in the oral cavity. The aim of this study was to investigate the effects of GlcNAc metabolism on the genomics and biochemistry of a saliva-derived microbial community, and on the surface integrity of human teeth and restorative surfaces. Pooled cell-containing saliva (CCS) was used to establish a microcosm biofilm in vitro in a biofilm medium (BM) containing 5 different carbohydrates. The microbial composition of each biofilm was analyzed by 16S rRNA amplicon sequencing, and the concentrations of eight organic acids were determined for selected sugars by targeted metabolomics. Meanwhile, extracted human teeth and polished titanium and ceramic disks were submerged in BM supplemented with 1% of glucose or GlcNAc, inoculated with CCS and Streptococcus mutans UA159, and incubated for 30 days. To mimic the effects of other microbial byproducts, the specimens were immersed in 10 mM hydrogen peroxide and 10 mM ammonium hydroxide for 30 days. The surface of each specimen was evaluated by profilometry for roughness (Ra) and imaged by scanning electron microscopy. The pH of the biofilm supernatant was significantly higher for the medium containing GlcNAc (p < 0.0001), and was higher in samples containing teeth than the two restorative disks for media containing the same sugar. For both teeth and titanium specimens, the samples treated with glucose-biofilm presented higher roughness values (Ra) than those with GlcNAc-biofilm and every other group. SEM images of the teeth and titanium disks largely supported the profilometry results, with glucose-biofilm samples demonstrating the largest deviation from the reference. For ceramic disks, slightly higher Ra values were obtained for the ammonia group. These findings provide the first direct evidence to support the ability of amino sugars to significantly reduce the cariogenic potential of oral biofilms by altering their biochemistry and bacterial composition. Additionally, amino sugar metabolism appears to be less detrimental to teeth and restorative surfaces than glucose metabolism.

Assessing national HAA9 occurrence and impacts of a potential HAA9 regulation

AbstractThe US Environmental Protection Agency is tasked with proposing revisions to Microbial and Disinfectant and Disinfection Byproducts rules (DBPR) by 2025. Disinfection byproducts are currently regulated by the Stage 2 DBPR, inclusive of total trihalomethane and five haloacetic acids (HAA5). EPA's Fourth Unregulated Contaminant Monitoring Rule (UCMR4) included monitoring for HAA5, six brominated haloacetic acids (HAA6Br), and nine haloacetic acids (HAA9). UCMR4 and state‐managed compliance data were utilized to assess the potential impacts of regulating HAA9. HAA9 modeling techniques were validated and applied for greater representation of smaller systems. Outcomes suggest a HAA9 maximum contaminant level (MCL) equivalent to the HAA5 MCL by number of public water systems (PWSs) implicated would be between 72–77 μg/L. An additional 395 PWSs (2%) not currently implicated by Stage 2 DBPR would have compliance challenges if HAA9 is regulated with an MCL equal to the 60 μg/L HAA5 MCL.

High-Molecular-Weight Dextran-Type Exopolysaccharide Produced by the Novel Apilactobacillus waqarii Improves Metabolic Syndrome: In Vitro and In Vivo Analyses.

Metabolic syndrome is a leading medical concern that affects one billion people worldwide. Metabolic syndrome is defined by a clustering of risk factors that predispose an individual to cardiovascular disease, diabetes and stroke. In recent years, the apparent role of the gut microbiota in metabolic syndrome has drawn attention to microbiome-engineered therapeutics. Specifically, lactic acid bacteria (LAB) harbors beneficial metabolic characteristics, including the production of exopolysaccharides and other microbial byproducts. We recently isolated a novel fructophilic lactic acid bacterium (FLAB), Apilactobacillus waqarii strain HBW1, from honeybee gut and found it produces a dextran-type exopolysaccharide (EPS). The objective of this study was to explore the therapeutic potential of the new dextran in relation to metabolic syndrome. Findings revealed the dextran’s ability to improve the viability of damaged HT-29 intestinal epithelial cells and exhibit antioxidant properties. In vivo analyses demonstrated reductions in body weight gain and serum cholesterol levels in mice supplemented with the dextran, compared to control (5% and 17.2%, respectively). Additionally, blood glucose levels decreased by 16.26% following dextran supplementation, while increasing by 15.2% in non-treated mice. Overall, this study displays biotherapeutic potential of a novel EPS to improve metabolic syndrome and its individual components, warranting further investigation.

Occurrence and fate of bacterial endotoxins in the environment (air, water, wastewater) and remediation technologies: An overview.

Endotoxins as the outer membrane of most Gram-Negative Bacteria (GNB) and typical toxic biochemical produced by microorganisms are identified as one of the emerging pollutants. These microbial by-products are harmful compounds that can be present in various environments including air, water, soil, and other ecosystems which were discussed in detail in this review. Environmental and occupational exposure caused by endotoxin occurs in water and wastewater treatment plants, industrial plants, farming, waste recovery, and composting facilities. Even though the health risk related to endotoxin injection in intravenous and dialysis are well identified, the harmful effects of ingestion, inhalation, and other way of exposure are not well quantified and there is insufficient information on the potential health risks of endotoxins exposure in water environments, and another exposure. Because of limited studies, the outbreaks of diseases related to endotoxins in the various source of exposure not been well documented. Endotoxin removal from different environments are investigated in this review. The results of various studies have shown that conventional treatment methods have been unable to remove endotoxins from water and wastewater, therefore, monitoring the effectiveness of these processes in controlling this contaminant and also using the appropriate removal method is essential. However, management of water and wastewater treatment processes and the use of advanced processes such as Advanced Oxidation Processes (AOPs) can be effective in monitoring and reducing endotoxin levels during water and wastewater treatment. One of the limitations of endotoxin monitoring is the lack of sufficient information to develop monitoring levels. In addition, the lack of guidelines and methods of controlling them at high levels may cause irreparable disaster.

Accelerated stabilization of high solid sludge by thermal hydrolysis pretreatment in autothermal thermophilic aerobic digestion (ATAD) process.

Autothermal thermophilic aerobic digestion (ATAD) is a rapid biological treatment technology for sludge stabilization. To improve digestion efficiency and shorten stabilization time, thermal hydrolysis pretreatment was employed before ATAD of high solid sludge. The results showed that accelerated stabilization of high solid sludge (total solid=10.1%) was achieved by thermal hydrolysis pretreatment with volatile solid removal efficiency of 40.3% after 8 days of ATAD, 11 days earlier than unpretreated sludge. The enhanced release and hydrolysis of intracellular organics resulted in a solubilization degree of 45.3%. The reduced sludge viscosity and improved fluidity after thermal hydrolysis facilitated mixing, aeration and organics degradation during ATAD. Excitation emission matrix analysis indicated that the fluorescence intensity of soluble microbial byproduct and tyrosine-like protein increased markedly after thermal hydrolysis and decreased after ATAD. The proportion of high molecular weight (MW>10kDa) substances in the supernatant increased significantly after thermal hydrolysis, while the low MW (MW<1kDa) substances decreased after ATAD. The significant difference in microbial composition between the pretreatment and control groups elucidated the accelerated sludge stabilization under thermal hydrolysis. This work provides an efficient and practical strategy to achieve rapid stabilization of high solid sludge.

Deciphering the role of microplastic size on anaerobic sludge digestion: Changes of dissolved organic matter, leaching compounds and microbial community

Here the role of microplastic size on dissolved organic matter, leaching compounds and microbial community during anaerobic sludge digestion was evaluated. Compared to that without the addition of polyvinyl chloride (PVC), during the 30 days' incubation, the anaerobic sludge digestion by adding PVC at the size of 75 μm and the concentration of 2.4 g/g volatile solids (VS) showed a 8.5% lower cumulative methane production, while a 17.9% higher cumulative methane production was noted by adding PVC at the size of 3000 μm and the concentration of 2.4 g/g VS. A long-term fed-batch laboratory-scale fermenter test for 147 days further testified, that higher removal efficiencies of total solids, volatile solids, and total chemical oxygen demand, and higher methane production were noted by adding PVC (2.4 g/g VS, 3000 μm) into the fermenter. More interestingly, higher concentrations of proteins, polysaccharides, volatile fatty acids, and soluble microbial by-products component were noted in the liquid phase of sludge drawn from the fermenter added with PVC since the biomass therein showed higher efficiencies of solubilization, hydrolysis, acidification, and methanogenesis. Moreover, as identified from the fermenter added with PVC, dibutyl phthalate (DBP) was the most predominant leaching phthalates compound, although the biomass therein showed a 93.4% anaerobic biodegradability of DBP. The leaching of DBP drove the predominance of microbial community towards Synergistota and Methanosaeta. More irregular elliptical shallow dimples were noted on the PVC surface after 147 days' incubation, accompanied with abundances of Proteobacteria, Actinobacteriota, Chloroflexi, Methanosaeta and Methanobacterium. The results from this study showed that the size of microplastic was a crucial factor in evaluating its impact on anaerobic sludge digestion.

Substituting urea with biogas slurry and hydrothermal carbonization aqueous product could decrease NH3 volatilization and increase soil DOM in wheat growth cycle

Biogas slurry (BS) and hydrothermal carbonization aqueous products (HAP), which are rich in nitrogen (N) and dissolved organic matter (DOM), can be used as organic fertilizer to substitute inorganic N fertilizer. To evaluate the effects of co-application of BS and HAP on the ammonia (NH3) volatilization and soil DOM content in wheat growth season, we compared six treatments that substituting 50%, 75%, and 100% of urea-N with BS plus HAP at low (L) or high (H) ratio, named BCL50, BCL75, BCL100, BCH50, BCH75, BCH100, respectively. Meanwhile, urea alone treatment was set as the control (CKU). The results showed that both BCL and BCH treatments significantly mitigate the NH3 volatilizations by 9.1%–45.6% in comparison with CKU (P < 0.05), whose effects were correlated with soil NH4+-N content. In addition, the decrease in soil urease activity contributed to the lower NH3 volatilization following application of BS plus HAP. Notably, BS plus HAP applications increased the microbial byproduct- and humic acid-like substances in soil by 9.9%–74.5% and 100.7%–451.9%, respectively. Consequently, BS and HAP amended treatments significantly increased soil humification index and DOM content by 13.7%–41.2% and 38.4%–158.7%, respectively (P < 0.05). This study suggested that BS and HAP could be co-applied into agricultural soil as a potential alternative of inorganic fertilizer N, which can decrease NH3 loss but increase soil fertility.

Mechanism of dielectric barrier discharge plasma technology to improve the quantity of short-chain fatty acids in anaerobic fermentation of waste active sludge.

The mechanism of improving the anaerobic fermentation performance of waste active sludge by using dielectric barrier discharge (DBD) plasma pretreatment technology was investigated. The maximum accumulation of short-chain fatty acids (SCFAs) was observed on the 7th day of anaerobic fermentation when the DBD power was 76.50 W, which was 1726.70 mg COD/L, 1.50 times of the control group. The ratio of acetic acid in DBD group was 9.30% higher than that in the control. Further mechanism research indicated that DBD pretreatment can destroy the structure of extracellular polymer substances and release organic substances such as protein and polysaccharide. The dissolved organic matter analysis indicated that the DBD technique could increase the release of biodegradable organics (eg., tyrosine proteins, soluble microbial by-products), thus accelerate the biotransformation of organic substance. Bacterial community structure analysis showed that the increase in the abundance of Firmicutes and Bacteroidetes and the decrease in the abundance of Proteobacteria in DBD group were beneficial to the accumulation of SCFAs. Besides, further archaeal analysis indicated that the decrease of Methanosaeta sp. and Methanosarcina sp. abundance in the DBD group facilitate acetic acid accumulation. This study demonstrated that the DBD technique can be used as an effective and potential pretreatment method to improve sludge anaerobic fermentation performance.

Treatment of membrane concentrated landfill leachate by a heterogeneous electro-Fenton process with an iron-loaded needle coke cathode

Mature membrane concentrated landfill leachate is one of the most recalcitrant wastewaters due to its high pollutant concentration, poor biodegradability, and stable organic structure. In this study, a heterogeneous electro-Fenton system was constructed using a Fe-loaded needle coke composite electrode as a cathode to treat the membrane concentrated landfill leachate from a local closed landfill. The reaction conditions were evaluated and optimized by the response surface method based on Box-Behnken design. A second-order polynomial model with COD removal rate as the response and initial pH, plate spacing, and applied voltage as independent variables were established. After treatment by the heterogeneous electro-Fenton process with the needle coke composite cathode under the optimal conditions of applied voltage 10 V, initial pH 3.6, and the plate spacing 1.4 cm, the COD and color removal rates of the membrane concentrate were up to 71.9% and 99.8%, respectively, and the biodegradability was significantly improved with the BOD5/COD increasing from 0.003 to 0.379. Various spectral analyses of the wastewater before and after electro-Fenton treatment with the needle coke composite cathode demonstrated that most of the macromolecular organic pollutants in the landfill leachate concentrate including aromatic compounds, simple aromatic protein compounds, soluble microbial by-products, and humic acid were significantly degraded. As a result, the electro-Fenton technique with the needle coke composite cathodes is one of the cost-effective options for treating membrane concentrated landfill leachate.

Genes Involved in Feed Efficiency Identified in a Meta-Analysis of Rumen Tissue from Two Populations of Beef Steers.

Simple SummaryThe rumen makes up a large portion of the digestive tract of beef cattle and is responsible for the absorption of nutrients and microbial by-products. The rumen papillae interact with feed, microbial populations, and fermentation products important to cattle nutrition. Variation in the animal’s ability to take up and utilize these nutrients affects feed efficiency. This study was performed to identify genes involved in feed efficiency that are expressed in two unrelated and physically distant populations of Angus and Hereford crossbred steers. A total of 83 genes were identified that may be useful indicators of feed efficiency in cattle. Differentially expressed genes were involved in a protein turnover pathway and a stomach lining turnover pathway. The use of meta-analysis for the two populations of cattle with different sire lines, management and handling techniques, and feed ingredients should allow the identification of genes that are involved in feed efficiency across cattle populations rather than those identified in a single population.In cattle, the rumen is an important site for the absorption of feed by-products released by bacterial fermentation, and variation in ruminal function plays a role in cattle feed efficiency. Studies evaluating gene expression in the rumen tissue have been performed prior to this. However, validating the expression of genes identified in additional cattle populations has been challenging. The purpose of this study was to perform a meta-analysis of the ruminal transcriptome of two unrelated populations of animals to identify genes that are involved in feed efficiency across populations. RNA-seq data from animals with high and low residual feed intake (RFI) from a United States population of cattle (eight high and eight low RFI) and a Canadian population of cattle (nine high and nine low RFI) were analyzed for differences in gene expression. A total of 83 differentially expressed genes were identified. Some of these genes have been previously identified in other feed efficiency studies. These genes included ATP6AP1, BAG6, RHOG, and YPEL3. Differentially expressed genes involved in the Notch signaling pathway and in protein turnover were also identified. This study, combining two unrelated populations of cattle in a meta-analysis, produced several candidate genes for feed efficiency that may be more robust indicators of feed efficiency than those identified from single populations of animals.

Response of electron transfer capacity of humic substances to soil microenvironment

The humic substances (HS) - mediated electron transfer process is of great significance to the reduction and degradation of pollutants and the improvement of soil quality. Different soil conditions lead to different characteristics of HS, resulting in differences in the electron transfer capacity (ETC) of HS. It is unclear how the environmental conditions in soil affect the ETC by affecting on HS. In this study, the response relationship of soil microenvironment, HS and ETC has been studied. The results show that the ETC follows the descending order of: Langshan > Nanchang > Anqing > Beijing > Guilin. There were significant differences in ETC in soil HS in different regions. There were significant differences in electron-donating capacity (EDC) in soil HS in different regions and depths. EDC in soil was higher than electron-accepting capacity (EAC), and on average, are 22.4 times higher than the EAC. The HS components of soils in different regions are different. The most significant differences were in tyrosine-like substances and soluble microbial by-products (SMPs). The five components of the soil HS from Langshan were the most different from those in other regions. There were differences in SMPs and humic-like substances in soils of different depths in Anqing and Guilin. ETC can be affected by the composition of HS components in different regions. The composition of HS at different soil depths in the same regions had little effect on ETC. SMPs can promote ETC and EDC, and tyrosine-like substance can promote EDC. Moisture content, pH and TOC are the main factors affecting the composition of HS components. This results can provide a research basis for the sustainable and safe utilization of agricultural soil.

Can we do without biocides to cope with biofilms and lichens on stone heritage?

In the past several years, products and methods alternative to conventional biocides, used in the conservation of cultural heritage objects, have been investigated increasingly to eradicate or prevent the growth of microorganisms and lichens on stone artworks. Although some concerns about conventional biocides are legitimate, the “run” to alternative substances is growing concern as well. This review aims at contributing to the interpretation of recent findings in innovative methods and substances focusing on i) resistance of biofilms to environmental stressors, including antimicrobials; ii) metals and metal-based compounds including nanoparticles; iii) mixtures of metal nanoparticles and metal oxides with water repellents and consolidants; iv) natural compounds (essential oils of plants, secondary metabolites of lichens, microbial by-products, microorganisms, extracts from marine organisms); v) toxicity of essential oils; vi) alternative chemicals (Ionic liquids, dimethyl sulfoxide gel, hydrolase enzymes). This review also includes a discussion on the advantages, drawbacks and limitations of the examined studies to encourage a constructive discussion among professionals involved in the field of stone heritage conservation, and to develop a sustainable path for managing the biological colonization. This state-of-the-art review indicates that further research is needed to propose alternative compounds to conventional biocides.

Current Trends in Root Canal Irrigation.

Chemical and mechanical root canal debridement are the primary methods used in endodontic therapy to remove all dead tissue, bacteria, and microbial byproducts from the canal. Sodium hypochlorite, a powerful organic tissue dissolver with a broad spectrum of antibacterial properties, is an excellent choice for disinfecting surfaces. Chelating agents, on the other hand, may be used to remove the inorganic components found on the smear layer. This irrigation method is capable of removing the smear layer; however, it is less effective in the apical third. While using irrigant activation devices, irrigating solutions need to be in direct contact with the whole root canal wall surfaces, especially in the apical portions of tiny root canals. The role of irrigants is extremely important because they help not only to clean the canal but also to allow the seepage of the medicaments into the canal system. Thus, the canal needs to be healthy before the obturation procedure. Nowadays, many irrigants have been studied and hence compilation of the various available sources and their effect has to be studied both in vivo and in vitro. The correlation between the irrigants and the canal cleanliness is of utmost importance, as the success of endodontic root canal treatment depends on its proper activation and characteristics. Hence, this review incorporates the current use of various irrigating solutions and their advantages and disadvantages. In the future, endodontists may employ the novel irrigants and irrigant activation devices that were discovered in this study.