Response Of Microorganisms Research Articles

Oligotrophic state reduces the time dependence of the observed survival fraction for heavy ion beam-irradiated Saccharomyces cerevisiae and provides new insights into DNA repair.

Heavy ion beam (HIB) irradiation is widely utilized in studies of cosmic rays-induced cellular effects and microbial breeding. Establishing an accurate dose-survival relationship is crucial for selecting the optimal irradiation dose. Typically, after irradiating logarithmic-phase cell suspensions with HIB, the survival fraction (SF) is determined by the ratio of clonal-forming units in irradiated versus control groups. However, our findings indicated that SF measurements were time sensitive. For the Saccharomyces cerevisiae model, the observed SF initially declined and subsequently increased in a eutrophic state; conversely, in an oligotrophic state, it remained relatively stable within 120 minutes. This time effect of SF observations in the eutrophic state can be ascribed to HIB-exposed cells experiencing cell cycle arrest, whereas the control proliferated rapidly, resulting in an over-time disproportionate change in viable cell count. Therefore, an alternative involves irradiating oligotrophic cells, determining SF thereafter, and transferring cells to the eutrophic state to facilitate DNA repair-mutation. Transcriptomic comparisons under these two trophic states yield valuable insights into the DNA damage response. Although DNA repair was postponed in an oligotrophic state, cells proactively mobilized specific repair pathways to advance this process. Effective nutritional supplementation should occur within 120 minutes, beyond this window, a decline in SF indicates an irreversible loss of repair capability. Upon transition to the eutrophic state, S. cerevisiae swiftly adapted and completed the repair. This study helps to minimize time-dependent variability in SF observations and to ensure effective damage repair and mutation in microbial breeding using HIB or other mutagens. It also promotes the understanding of microbial responses to complex environments.IMPORTANCEMutation breeding is a vital means of developing excellent microbial resources. Consequently, understanding the mechanisms through which microorganisms respond to complex environments characterized by mutagens and specific physiological-biochemical states holds significant theoretical and practical values. This study utilized Saccharomyces cerevisiae as a microbial model and highly efficient heavy ion beam (HIB) radiation as a mutagen, it revealed the time dependence of observations of survival fractions (SF) in response to HIB radiation and proposed an alternative to avoid the indeterminacy that this variable brings. Meanwhile, by incorporating an oligotrophic state into the alternative, this study constructed a dynamic map of gene expression during the fast-repair and slow-repair stages. It also highlighted the influence of trophic states on DNA repair. The findings apply to the survival-damage repair-mutation effects of single-celled microorganisms in response to various mutagens and contribute to elucidating the biological mechanisms underlying microbial survival in complex environments.

Rearing of Black Soldier Fly Larvae with Corn Straw and the Assistance of Gut Microorganisms in Digesting Corn Straw.

Corn straw is considered a renewable biomass energy source, and its unreasonable disposal leads to resource waste and environmental pollution. Black soldier fly (Hermetia illucens L.) larvae (BSFL) facilitate the bioconversion of various types of organic wastes. In this study, we found that 88% of BSFL survived, and 37.4% of corn straw was digested after 14 days of feeding with corn straw. Contrary to expectations, the pretreatment of corn straw with alkaline hydrogen peroxide did not promote its digestion but rather reduced the growth and survival rates of BSFL. Acinetobacter, Dysgonomonas, and unclassified Enterobacteriaceae were the abundant genera in the BSFL gut fed with corn straw. Compared with the standard diet, the relative abundances of carbohydrate metabolism genes, such as the gene abundances of β-glucosidase and α-glucosidase, were higher with corn straw as the substrate. These results suggested that the gut microbial community could regulate suitable and functional microorganisms in response to the substrates. Furthermore, four cellulase-producing strains, namely Klebsiella pneumoniae, Proteus mirabilis, Klebsiella oxytoca, and Providencia rettgeri, were isolated from the guts of corn straw BSFL. These four strains helped increase the conversion rates of corn straw, the weights of BSFL, and survival rates. In summary, we reared BSFL with corn straw and discovered the functions of gut microorganisms in adapting to the substrates. We also isolated four cellulase-producing strains from the BSFL guts and declared the benefits of BSFL digesting corn straw.

Evaluation of strain variability of food microorganisms in response to decontamination by pulsed electric fields and thermal treatments

The effect of pulsed electric fields (PEF) and thermal treatments on the inactivation of the population of 40 strains of 4 model microorganisms (Escherichia coli, Listeria monocytogenes, Lactiplantibacillus plantarum, Saccharomyces cerevisiae) were investigated. Microbial samples of McIlvaine buffer pH 7.0 were subjected to pulses with electric field strength 20 kV/cm and total specific energies (88, 136, and 184 kJ/kg). Depending on the species and strain, microorganisms exhibited various resistances. PEF microbial resistance and strain variability data were correlated to the total specific energy used. E. coli strains showed statistical log10 inactivation differences under the 88 and 136 kJ/kg but not under the 184 kJ/kg PEF treatment. In contrast, L. monocytogenes strains showed statistical log10 inactivation differences only under the 184 kJ/kg treatment. L. monocytogenes L6 strain was identified as the most resistant strain at PEF treatment (184 kJ/kg). This result was in accordance with the resistance under thermal treatment (62.8 °C, 30 min). Industrial relevanceThe identification of target microorganisms related to their resistance in one or more technologies can help at establishing treatment conditions that reassure food safety. Data obtained in this research show that species and strain behaviours vary and are dependent on the technology and the applied treatment conditions. Thus, the resistance exhibited by microorganisms of public health importance may be dependent on the used technology and the applied treatment.

Changes in soil microbial diversity under present land degradation scenario

Soil biological characteristics are drastically altered by land degradation. Degradation may reduce the number of microorganisms in the soil. Multiple activities and services provided by grassland ecosystems are impacted by land use change because of the resulting shifts in plant community composition and soil characteristics. A large body of research has examined the geographical and temporal dynamics of bacterial community structure and bacterial responses to human management in grassland ecosystems. As one of the most consequential environmental shifts occurring today, land use modification can affect microbial communities through modifying soil environmental parameters, nutritional conditions, and biological interactions. Whereas, soil microbes play crucial roles in nutrient cycling, organic matter decomposition, disease suppression, and overall soil health. Land degradation practices, such as deforestation, overgrazing, intensive agriculture, and improper land management, can disrupt the balance and diversity of soil microbial communities, leading to negative consequences for ecosystem functioning. To mitigate the negative effects of land degradation on soil microbial communities, sustainable land management practices should be adopted. These practices include soil conservation, reforestation, crop rotation, reduced tillage, organic farming methods, and proper nutrient management. By promoting soil health and restoring ecosystem processes, these approaches can help rebuild and maintain diverse and functional soil microbial communities.The purpose of this review is twofold: (1) to assess the diversity and composition of soil microorganisms in response to distinct land-use scenarios; and (2) to compare the relative importance of environmental factors driving these variations.

Unearthing care: Rooting alternative agricultural practices in Norway and Costa Rica

This article contributes to the growing literature on human-soil relations by exploring how care for agricultural soils unfolds among farmers who engage with alternative agricultural practices across different productions and sites in Norway and Costa Rica. These farmers approach soil as a living being and seek to approach care with macro- and microorganisms in response to soil challenges and economic instabilities. The article follows recent literature on soil care in showing how agricultural practices challenge the dominant approach to soils as passive. However, the article argues the necessity of expanding on existing notions of care. This, I argue, involves ethnographically “unearthing” care: unpacking and situating a diversity of soil care practices, their human and other-than-human entanglements, and how these relations are conditioned by environmental, genealogical, sociocultural, temporal, epistemic, economic, and political mechanisms within and beyond the farm. Considering these variables is essential to keep soil care in the emerging literature from following a romanticizing path toward abstract individualism.

Pseudomonas siderophores: production, spectrophotometry detection and Botrytis suppression

Siderophores are iron-chelating agents produced by almost all microorganisms in response to iron deficiency. Due to the requirement of iron for cell growth and metabolism, siderophore-mediated acquisition of iron plays a central role in determining the ability of different microorganisms to colonize plant roots and contributes to microbial interactions in the plant rhizosphere. In this study, five new Pseudomonas (Q14B, Q13B, Q7B, Q6B, Q1B), isolated from the rhizosphere of tomato in Morocco, were examined for siderophores production capacity. The results show that all five isolates produced siderophores on both solid and liquid mediums. In liquid medium, the highest level of production is obtained by Q13B (53.8%). Concerning siderophores’ chemical types, the five strains of Pseudomonas produce two types of siderophores hydroxamate and catecholate. It was shown by the peaks of absorbance in the wavelength 495 and between 420-450 nm for catecholate and hydroxamate-type siderophores respectively. The results showed that the production of siderophores is progressively inhibited with increasing concentrations of iron in the medium. The maximum production was obtained with a concentration of 0.5 μM, while the lowest was recorded at 10.0 μM of iron. The results of this study showed that the five Pseudomonas isolates producing siderophores could be potential biological control agents.

Soil Ecoenzymatic Stoichiometry Reveals Microbial Metabolic Limitations in Apple Orchards with Cover Crop and Organic Fertilizer Incorporation

Understanding the stoichiometry of extracellular enzymes in soil, particularly in relation to nutrient acquisition (e.g., carbon, nitrogen, phosphorus), provides valuable insights into microorganisms’ resource requirements. This study investigates the metabolic constraints of soil microorganisms in response to different growth stages of apple trees under various soil management practices. A 14-year long-term experiment with a split-plot design was conducted, where the main plots received different cover crop treatments (bare vs. cover crop), and subplots were subjected to four fertilizer treatments (CK, M, NPK, MNPK). The significant main and interactive effects of cover crops, fertilizer treatment, and growth period on soil nutrients were observed (p < 0.001). Both cover crop and fertilizer treatments significantly increased the soil organic matter content, with implications for orchard resilience to drought. However, the cover factor alone did not notably influence soil carbon–nitrogen ratios or microbial communities. Microbial carbon limitations were driven by soil water dynamics and microbial biomass, while microbial phosphorus limitations were closely linked to total nitrogen levels. The results underscore the combination of cover crops and MNPK fertilizer-enhanced soil nutrient levels and enzyme activities, mitigating microbial carbon and phosphorus limitations. These findings suggest practical strategies for optimizing fertilization practices to improve soil fertility and address nutrient constraints in orchard ecosystems.

Diversity, composition, metabolic characteristics, and assembly process of the microbial community in sewer system at the early stage.

Sewer systems play vital roles in wastewater treatment facilities, and the microbial communities contribute significantly to the transformation of domestic wastewater. Therefore, this study conducted a 180-day experiment on a sewer system and utilized the high-throughput sequencing technology to characterize the microbial communities. Additionally, community assembly analysis was performed to understand the early-stage dynamics within the sewer system. The results demonstrated that the overall diversity of microbial communities exhibited fluctuations as the system progressed. The dominant phyla observed were Chloroflexi, Bacteroidetes, Firmicutes, and Proteobacteria, accounting for over 85.4% of the total relative abundances. At the genus level, bacteria associated with fermentation displayed a high relative abundance, particularly during days 75 to 180. A random-forest machine-learning model identified a group of microbes that confirmed the substantial contribution of fermentation. During the process of fermentation, microorganisms predominantly utilized propionate formation as the main pathway for acidogenesis, followed by acetate and butyrate formation. In terms of nitrogen and sulfur cycles, dissimilatory nitrate reduction and assimilatory sulfate reduction played significant roles. Furthermore, stochastic ecological processes had a dominant effect during the experiment. Dispersal limitation primarily governed the assembly process almost the entire experimental period, indicating the strong adaptability and metabolic plasticity of microorganisms in response to environmental variations. This experiment provides valuable insights into the metabolic mechanisms and microbial assembly associated with sewer systems.

Soil-borne disease suppressiveness after short and long term application of fermented, composted or fresh organic amendment treatments in arable soils

Soil-borne diseases can cause significant crop losses and should be tackled sustainably in agroecosystems. Increasing the capacity of soils to suppress the effects of soil-borne diseases (soil suppressiveness) is an important tool in sustainable crop production. Soil suppressiveness can be improved by adding organic amendments to the soil for multiple years, but the effects can vary greatly depending on the processing method of the organic amendment (composted, fermented, or fresh material) and the time since application. To test these impacts we conducted two bioassays using the Lepidium savitum (cress) – Pythium ultimum model system. We tested the disease suppression capacity of sandy arable soil from a field experiment where fresh plant material, compost, or Bokashi (fermented amendment), all originating from the same plant material had been applied for two consecutive years across 10 field sites subject to conventional farming. In addition, the effect of short term application on soil suppressiveness was tested right after applying the same organic amendments to control arable sandy soil from 2 sites from the field experiment. Field sites strongly differed in cress growth independent of the organic amendment treatments. Absence of field effects in the sterilized soil and their soil chemical characteristics suggested differences in inherent soil pathogen load between the field sites. Focussing on sites with low inherent pathogen load we found no significant impact of long term organic amendment application on either cress weight or soil suppressiveness. However, short term application of Bokashi did significantly promote soil suppressiveness. This effect can likely be attributed to the increased metabolic activity of the soil's microorganisms in response to Bokashi, which contains more easily decomposable compounds as compared to the other soil amendments, together with Bokashi microorganisms that survive the fermentation and are activated in the aerobic soil condition. Our results suggest that Bokashi could promote the suppression of soil-borne diseases by stimulating the locally adapted soil microbiome but the longevity of this effect requires further field tests.

Temperate grassland soil nitrifiers are more sensitive to nitrogen addition than simulated warming

Soil nitrogen transformations are influenced by both global climate change and human activities. Nitrification, affected by ammonia-oxidizing and nitrite-oxidizing microorganisms, is one of the crucial N transformation processes. However, the impact of environmental change on the diversity and community structure of these microorganisms in grassland ecosystems remains poorly understood. This study explored the alpha diversity and community structures of N-cycling microorganisms in response to simulated warming and N addition in a temperate steppe. The results showed that N addition significantly increased the taxon richness of ammonia-oxidizing bacteria and nitrite-oxidizing bacteria but significantly decreased the diversity of total archaea. Also, N addition significantly changed the community structures of ammonia-oxidizing bacteria, nitrite-oxidizing bacteria, and total archaea and bacteria. However, warming had no effect on the whole microbiome alpha and beta diversity. The alternations of microbial communities were mainly induced by changes in soil pH and inorganic N concentrations. This study illustrates that the temperate grassland microbial communities are more sensitive to N addition than simulated warming under future climate change scenes.

Using sedimentary prokaryotic communities to assess historical changes in the Gippsland Lakes

Abstract The Gippsland Lakes is the largest estuarine system in Australia. Over the last 2 centuries, this unique aquatic ecosystem has suffered substantial modifications mostly associated with anthropogenic impacts, including the creation in 1889 of an artificial channel to the ocean after European arrival, creating chronic salinisation in the system. However, the biological impacts of this historic shift are unclear. Here, we use shotgun metagenomics of environmental DNA from historical sediments of Lake King and Lake Victoria to detect ancient microbial DNA and track past ecological changes in prokaryotic communities. Sedimentary prokaryotic communities changed with core depth, organic matter levels and European arrival. Specifically, we observed an increase in sulfate‐reducing bacteria (e.g., Desulfobacterales) and organic matter enrichment in the upper layers of the sediment cores of the Gippsland Lakes, which could reflect a period of eutrophication caused by higher rates of organic deposition and marine intrusion post‐European arrival. However, while some species presented authentic ancient DNA signals, the shifts in community composition probably reflect changes in indigenous sediment‐dwelling microorganisms in response to geochemical changes of the sediment. Overall, these observations suggest that historic waterway management practices may influence microbial systems today and that sedimentary microbial communities can change in response to both natural biogeochemical dynamics along the depth profile and past environmental conditions.

Effects of deterministic assembly of communities caused by global warming on coexistence patterns and ecosystem functions

Seasonal rhythms in biological and ecological dynamics are fundamental in regulating the structuring of microbial communities. Evaluating the seasonal rhythms of microorganisms in response to climate change could provide information on their variability and stability over longer timescales (>20-year). However, information on temporal variability in microorganism responses to medium- and long-term global warming is limited. In this study, we aimed to elucidate the temporal dynamics of microbial communities in response to global warming; to this end, we integrated data on the maintenance of species diversity, community composition, temporal turnover rates (v), and community assembly process in two typical ecosystems (meadows and shrub habitat) on the Qinghai-Tibet Plateau. Our results showed that 21 years of global warming would increase the importance of the deterministic process for microorganisms in both ecosystems across all seasons (R2 of grassland (GL) control: 0.524, R2 of GL warming: 0.467; R2 of shrubland (SL) control: 0.556, R2 of SL warming: 0.543), reducing species diversity and altering community composition. Due to environmental filtration pressure from 21 years of warming, the low turnover rate (v of warming: −3.13/-2.00, v of control: −2.44/−1.48) of soil microorganisms reduces the resistance and resilience of ecological communities, which could lead to higher community similarity and more clustered taxonomic assemblages occurring across years. Changes to temperature might increase selection pressure on specialist taxa, which directly causes dominant species (v of warming: −1.63, v of control: −2.49) primarily comprising these taxa to be more strongly impacted by changing temperature than conditionally (v of warming: −1.47, v of control: −1.75) or always rare taxa (v of warming: −0.57, v of control: −1.33). Evaluation of the seasonal rhythms of microorganisms in response to global warming revealed that the variability and stability of different microbial communities in different habitats had dissimilar biological and ecological performances when challenged with an external disturbance. The balance of competition and cooperation, because of environmental selection, also influenced ecosystem function in complex terrestrial ecosystems. Overall, our study enriches the limited information on the temporal variability in microorganism responses to 21 years of global warming, and provides a scientific basis for evaluating the impact of climate warming on the temporal stability of soil ecosystems.

Distinct microbial structure and metabolic potential shaped by significant environmental gradient impacted by ferrous slag weathering

Alkaline ferrous slags pose global environmental issues and long-term risks to ambient environments. To explore the under-investigated microbial structure and biogeochemistry in such unique ecosystems, combined geochemical, microbial, ecological and metagenomic analyses were performed in the areas adjacent to a ferrous slag disposal plant in Sichuan, China. Different levels of exposure to ultrabasic slag leachate had resulted in a significant geochemical gradient of pH (8.0–12.4), electric potential (−126.9 to 437.9 mV), total organic carbon (TOC, 1.5–17.3 mg/L), and total nitrogen (TN, 0.17–1.01 mg/L). Distinct microbial communities were observed depending on their exposure to the strongly alkaline leachate. High pH and Ca2+ concentrations were associated with low microbial diversity and enrichment of bacterial classes Gamma-proteobacteria and Deinococci in the microbial communities exposed to the leachate. Combined metagenomic analyses of 4 leachate-unimpacted and 2-impacted microbial communities led to the assembly of one Serpentinomonas pangenome and 81 phylogenetically diversified metagenome assembled genomes (MAGs). The prevailing taxa in the leachate-impacted habitats (e.g., Serpentinomonas and Meiothermus spp.) were phylogenetically related to those in active serpentinizing ecosystems, suggesting the analogous processes between the man-made and natural systems. More importantly, they accounted for significant abundance of most functional genes associated with environmental adaptation and major element cycling. Their metabolic potential (e.g., cation/H+ antiporters, carbon fixation on lithospheric carbon source, and respiration coupling sulfur oxidization and oxygen or nitrate reduction) may support these taxa to survive and prosper in these unique geochemical niches. This study provides fundamental understandings of the adaptive strategies of microorganisms in response to the strong environmental perturbation by alkali tailings. It also contributes to a better comprehension of how to remediate environments affected by alkaline industrial material.

Response mechanism of interaction between Rhododendron hainanense and microorganisms to heat stress

Heat stress is a major limitation to Rhododendron cultivation in tropical and subtropical regions. Microbial community plays an important role in plant resistance to heat stress, however the microbial mechanism is poorly understood. We conducted a pot culture experiment on Rhododendron hainanense to reveal the mechanism of root microorganisms and soil microorganisms in response to heat stress, using an artificial climate simulation. The experimental control (CK) was set as day (25 ℃, 14 h) /night (20 ℃, 10 h), treatments were medium temperature stress (MTS, 35/30 ℃), and severe temperature stress (STS, 40/35 ℃). The result showed that compared with CK, MTS treatment considerably increased malondialdehyde content, and STS treatment significantly increased proline, and both heat stress treatments significantly decreased chlorophyll content. In comparison to CK, MTS considerably reduced soil nitrate nitrogen, soil microbial biomass carbon, and soil water-soluble organic carbon content. STS dramatically increased soil available nitrogen, soil water-soluble organic carbon, and soil microbial biomass carbon. Heat stress also significantly affected soil microbial community and root endophytic microbial community. Soil microbial and root bacterial community significantly correlated with soil nitrate nitrogen content, and root endophytic fungi significantly correlated with proline and soilwater-soluble organic carbon content. Therefore, soil microorganisms impacted soil nitrogen availability under heat stress, root endophytic bacteria impacted the ability of R. hainanense to absorb nitrogen, and root endophytic fungi controlled the physiological traits of R. hainanense by modifying Pro content to increase the resistance of R. hainanense to heat stress.

EXOPOLYSACCHARIDES OF LACTIC ACID BACTERIA: THE MANIPULATION OF ENVIRONMENTAL STRESSES TO MODULATE BIOSYNTHESIS FOR INDUSTRIAL APPLICATIONS

Exopolysaccharides are biopolymers produced by microorganisms in response to adverse environmental conditions. Exopolysaccharides of lactic acid bacteria are applied in many different fields such as food, pharmaceuticals, and medicine. This review discusses the biological functions of the exopolysaccharide derived from lactic acid bacteria and their response to exopolysaccharide synthesis under environmental stresses. Environmental stress can alter the expression of eps genes, resulting in changes in yield and monosaccharide composition of obtained exopolysaccharides. Therefore, the evaluation aims to clarify the feasibility of using environmental stress to modify exopolysaccharide biosynthesis in lactic acid bacteria for various applications.

Molecular insights into enhanced nitrogen removal induced by trace fluoroquinolone antibiotics in an anammox system

It has been widely reported that fluoroquinolones (FQs) can affect the anaerobic ammonium oxidization (anammox) microorganisms, which interferes with the performance of nitrogen removal from wastewater. However, the metabolic mechanism of anammox microorganisms responding to FQs has rarely been explored. In this study, it was found that 20 μg/L FQs promoted the nitrogen removal performance of anammox microorganisms in batch exposure assays, and 36–51% of FQs were removed simultaneously. Combined metabolomics and genome-resolved metagenomic analysis revealed up-regulated carbon fixation in anammox bacteria (AnAOB), while purine and pyrimidine metabolism, protein generation and transmembrane transport were enhanced in AnAOB and symbiotic bacteria by 20 μg/L FQs. Consequently, hydrazine dehydrogenation, nitrite reduction, and ammonium assimilation were bolstered, improving the nitrogen removal efficiency of the anammox system. These results revealed the potential roles of specific microorganisms in response to emerging FQs and provided further information for practical application of anammox technology in wastewater treatment.

Diversity and function of soil microorganisms in response to paddy–upland rotation system in sustainable restoration of saline-sodic soils

Context Rapid desalination by planting rice in saline soil consumes large amounts of water, which is not environmentally friendly. Aims Herein, we propose rapid desalination by planting rice, then shifting to cultivating upland plants to attain substantial resource-saving and higher yield simultaneously with restoration of saline-sodic soil. Methods Field experiments were run for two consecutive years with five treatments: unreclaimed wasteland (WL) as control, rice cultivation followed by fallow (RF), rice–rice continuous cropping (RR), rice–ryegrass rotation (RG), and rice–sorghum rotation (RS). Physicochemical properties, including pH, electrical conductivity, and exchangeable sodium percentage were determined, and 16S rRNA sequences were used to evaluate soil microbial composition and stability. Key results The soil total organic carbon, total nitrogen, available phosphorus, and biomass in RR, RG, and RS treatments were all higher than RF and control. Notably, RR, RG, and RS increased the soil microbial biomass carbon and nitrogen, and significantly reshaped the soil communities of bacteria, fungi, and archaea relative to RF and WL. Conclusions Despite the lower efficiency of RG and RS in ameliorating saline-sodic soil, there were dramatic savings in irrigation water, and the improvements in microbial diversity and functionalities indicated that the paddy–upland crop rotation system had substantial influence on sustainability of soil quality. Implications Providing a balance between salt desalination performance with irrigation water input and yield, the paddy–upland rotation system is a robust, replicable, and environmentally friendly practice in saline-sodic soil remediation.

Pores distribution influences the soil microorganism's response to changes in temperature and moisture

Microorganisms are an essential fraction of soil organic matter, which presence and activity depend directly on soil physical conditions. This study aimed to address the effect of soil temperature and moisture under contrasting macroporosity conditions on soil biological properties. Soil physical-chemical characterization implicated the collection of composite samples and undisturbed surface soil samples (0 to 10 cm). Also, samples of undisturbed surface soil were extracted in 40 polyvinyl chloride cylinders of 18 cm diameter and 20 cm height for the arrangement of soil mesocosm as the experimental units of a completely randomized experiment with a 2x2x3 factorial arrangement. The experiment duration was 21 days, and the soil biological properties measured were microbial biomass (MB) and soil respiration (SR). Macroporosity showed a significant effect on MB, which indicates that aeration pore influences the number of microorganisms in the soil; for the SR, the macroporosity had a not significant effect. The temperature at the ranges established in the experiment did not significantly affect MB, whereas a highly significant effect of temperature over SR was observed. A highly significant effect of soil moisture was observed on MB and SR. Macroporosity, moisture, and temperature are determining factors in the presence of soil microorganisms, both directly and through the interaction between them. Herein the microorganisms have a wide range of thermal adaptation, and the effect of soil temperature can boost soil microorganisms. In turn, it was observed that the microorganisms present are significantly sensitive to the moisture deficit in soil.

Branch Lignification of the Desert Plant Nitraria tangutorum Altered the Structure and Function of Endophytic Microorganisms

Xerophytes in desert improve their fitness under stress through the development of stems and branches. However, little is known about changes in the structure and function of endophytic microorganisms in response to interactions between desert plants and their environment. In this study, we analyzed the lignification indices of young and mature branches during their development in a typical desert xerophyte, Nitraria tangutorum, and combined 16S and ITS high-throughput sequencing techniques to draw the following conclusions. Nitraria tangutorum accumulated more lignin, cellulose, and hemicellulose content during lignification. In addition, the number of OTUs and diversity of endophytic bacteria and fungi were reduced. Both endophytic bacteria and fungi were governed by stochastic processes during the development of stems and branches of Nitraria tangutorum and were significantly affected by lignification indices. Meanwhile, the development of stems and branches increased the relative abundance of Cyanobacteria and Ascomycota, and the dominant bacterial genera were mostly positively correlated with the lignification indices. In addition, stem and branch lignification reduced endophytic microbial interactions in the relationship between the endophytic bacterial and fungal networks of Nitraria tangutorum. Functional prediction analysis further revealed that lignification of Nitraria tangutorum branches changed the metabolic function of endophytic bacteria. The results of this study indicate that plant endophytic microorganisms play an important role in resisting and adapting to adversity and provide support for related studies on microbial ecology in desert areas.

Taxonomic response of bacterial and fungal populations to biofertilizers applied to soil or substrate in greenhouse-grown cucumber

Reductions in the quality and yield of crops continuously produced in the same location for many years due to annual increases in soil-borne pathogens. Environmentally-friendly methods are needed to produce vegetables sustainably and cost effectively under protective cover. We investigated the impact of biofertilizers on cucumber growth and yield, and changes to populations of soil microorganisms in response to biofertilizer treatments applied to substrate or soil. We observed that some biofertilizers significantly increased cucumber growth and decreased soil-borne pathogens in soil and substrate. Rhizosphere microbial communities in soil and substrate responded differently to different biofertilizers, which also led to significant differences in microbial diversity and taxonomic structure at different times in the growing season. Biofertilizers increase the prospects of re-using substrate for continuously producing high-quality crops cost-effectively from the same soil each year while at the same time controlling soil-borne disease.