Micro-food Web Research Articles

Grassland degradation-induced soil organic carbon loss associated with micro-food web simplification

Soil micro-food webs play a vital role in sustaining soil carbon cycling and stocks through the activities and interactions of individual organisms. However, grassland degradation disrupts these micro-food webs and is expected to reduce soil carbon stocks. This hypothesis was tested along degradation transects that were established in alpine meadows and steppes in arid regions, examining how multitrophic organisms and microbial metabolic efficiency respond to grassland degradation and how these responses relate to soil organic carbon (SOC). Grassland degradation reduced microbial necromass accumulation coefficient (the ratio of microbial necromass carbon to microbial biomass carbon) and increased microbial metabolic quotient (the ratio of soil respiration rate to microbial biomass carbon), indicating that microbes may prioritize SOC decomposition for resource acquisition over growth and necromass accumulation. Degradation led to increased bacterial and fungal diversity, reduced protist and nematode diversity, and simplified the structure of micro-food web (network complexity). Overall, grassland degradation reduced microbial metabolic efficiency, linked to reduced plant biomass, lower soil clay content, and a simplified micro-food web—particularly weakening interactions among microbes, microbivores, and predators—which is associated with SOC loss in degraded grasslands. These findings indicate the necessity of maintaining micro-food web structures to promote soil carbon sequestration in degraded grasslands.

Distribution characteristics and influencing factors of benthic diatoms on several typical beaches along the southern coast of China

Benthic diatoms are the primary beach vegetation on sandy coasts, acting as the main primary producers in such environments. Changes in their community structure and biomass can have substantial impact on both the entire micro-food web and the nearshore shallow marine ecosystem. This study focused on four typical beaches along the southern coast of China (Fuzhou Changle Beach, Xiamen Huizhan Beach, Xiamen Guanyinshan Beach, and Beihai Silver Beach). Analysis of benthic diatoms and environmental factors revealed that the distribution of benthic diatom communities on the studied beaches is influenced by elevation, salinity changes due to freshwater inputs, sediment composition, and hydrodynamic factors. The most important factor is elevation, which reflects the location of the beach in the tidal zone. On Beihai Silver Beach and the Xiamen beaches, the mid-tidal and low tidal zones are more conducive to growth and reproduction of benthic diatoms, and some diatom species show preference for different tidal zones. On dissipative beaches, benthic diatom abundance peaks in the mid-tidal zone, whereas on low tidal terrace beaches, diatom abundance is generally low in the high tidal zone and relatively high in the low tidal zone. Additionally, low tidal terrace beaches exhibit a “steep increase zone” of diatom abundance at the junction of the steep and gentle slopes, indicating that benthic diatom abundance responds more to this type of beach landform than to that of dissipative beaches.

Effects of Perennial Alfalfa on the Structure and Function of Soil Micro-Food Webs in the Loess Plateau.

The Loess Plateau is one of the most vulnerable areas in the world. Numerous studies have been conducted to investigate alfalfa fields with different planting years. Soil microorganisms and nematodes are vital in ecosystem functionality and nutrient cycling. Therefore, comprehending their response to alfalfa fields with varying years of planting is essential for predicting the direction and trajectory of degradation. Alfalfa fields with different planting years (2 years, 9 years, and 18 years) were used as the research object, and farmland was used as the control (CK). High-throughput sequencing and morphological methods determined the community composition of microorganisms and nematodes. Carbon metabolic footprints, correlation networks, and structural equations were used to study soil microorganisms and nematode interactions. Principal component analysis (PCA) results showed that alfalfa fields with different planting years significantly impacted soil microorganisms and nematode community structures. Planting alfalfa significantly increased the nematode channel ratio (NCR) and Wasilewska index (WI), but significantly reduced the soil nematode PPI/MI and dominance (λ). The correlation network results indicated that, for the 2-year and 18-year treatments, the total number of links and positive links are higher than other treatments. Conversely, the 9-year treatment had fewer positive links and more negative links compared to other treatments. Additionally, the keystone species within each network varied based on the treatment years. Structural equation results show that alfalfa planting years directly impact soil fungal community structure and plant-parasitic nematodes' carbon metabolism omnivorous-predatory nematodes. Furthermore, the carbon metabolism of omnivorous-predatory nematodes directly influences soil organic carbon fixation. Moreover, as the duration of alfalfa planting increases, the metabolic footprint of plant-parasitic nematodes decreases while that of omnivorous-predatory nematodes rises. Among treatments varying in alfalfa planting durations, the 9-year treatment exhibited the most incredible energy conversion and utilization efficiency within the soil food web, demonstrating the most stable structure. This study reveals optimal alfalfa planting duration for soil ecosystem stability in the Loess Plateau. Future research should explore sustainable crop rotations and alfalfa-soil-climate interactions for improved agricultural management.

Succession of Bacteria and Archaea Within the Soil Micro-Food Web Shifts Soil Respiration Dynamics.

Bacterivorous nematodes are important grazers in the soil micro-food web. Their trophic regulation shapes the composition and ecosystem services of the soil microbiome, but the underlying population dynamics of bacteria and archaea are poorly understood. We followed soil respiration and 221 dominant bacterial and archaeal 16S rRNA gene amplicon sequencing variants (ASVs) in response to top-down control by a common bacterivorous soil nematode, Acrobeloides buetschlii, bottom-up control by maize litter amendment and their combination over 32 days. Maize litter amendment significantly increased soil respiration, while A. buetschlii addition caused an earlier peak in soil respiration. Underlying bacterial and archaeal population dynamics separated into five major response types, differentiating in their temporal abundance maxima and minima. In-depth analysis of these population dynamics identified a broad imprint of A. buetschlii grazing on dominant bacterial (Acidobacteriota, Bacteroidota, Gemmatimonadota, Pseudomonadota) and archaeal (Nitrososphaerota) ASVs. Combined bottom-up control by maize litter and top-down control by A. buetschlii grazing caused a succession of soil microbiota, driven by population changes first in the Bacteroidota, then in the Pseudomonadota and finally in the Acidobacteriota and Nitrososphaerota. Our results are an essential step forward in understanding trophic modulation of soil microbiota and its feedback on soil respiration.

Soil micro-food web composition determines soil fertility and crop growth

Soil micro-food web composition determines soil fertility and crop growth

Functional traits data for testate amoebae of Northern Holarctic realm

The functional traits of soil protists have been employed in ecological research to enhance comprehension of the underlying mechanisms of ecological processes. Among the numerous soil protists, testate amoebae emerge as a prominent and abundant group, playing a pivotal role in soil micro-food webs. Furthermore, they are regarded as valuable bioindicators for environmental monitoring and palaeoecological studies due to their sensitivity to environmental changes. We screened 372 testate amoebae species widely distributed across Northern Holarctic realm and collected trait data, representing the morphological and feeding characteristics of testate amoebae. The dataset would provide valuable basis for investigation of the functional diversity and ecological roles of testate amoebae, thus facilitating further research on soil protist communities and ecosystem dynamics.

Miscanthus litter additions induce a successional change in the soil micro-food web with apparent decreases in soil nitrogen

The rapid loss of soil carbon (C) from cultivated peatland soils is leading to the use of high lignin, C-rich litter amendments as a potential solution to slow C losses. These chemically recalcitrant litter inputs are expected to cause microbial nitrogen (N) immobilization as a result of changes in the soil micro-food web, but whether bioavailable N is altered by litter as it is decomposed by the micro-food web remains unclear. We monitored changes in the soil nematode, fungal, and bacterial communities over time and across space (the rhizosphere and bulk soil) after field-applying different types of ligneous litter from miscanthus, ash, willow, or larch to a cultivated peatland soil. We found that miscanthus grass (C:N = 118) induced succession from fast-growing nematodes (cp-1) to slower-growing, cp-3 and cp-4 nematodes and this corresponded to reduced N availability. This lower soil N was likely due to relatively higher microbial biomass we observed with miscanthus, combined with a decrease in fast-growing bacterivores, limiting N mineralization from nematode grazing. We did not observe strong effects on the soil micro-food web or microbial biomass N for the other woody litters that had much higher C:N. This indicates that the changes in nematode community composition following ligneous litter inputs and subsequent impacts on soil N depend on litter type but are independent of litter C:N. Miscanthus amendments also corresponded to the lowest lettuce yield of all the amendments and thus caution is raised when using miscanthus straw as a widely-applied litter. Our results provide a useful reference to predict the effect of litter amendments on cultivated peatland soils through soil micro-food web dynamics, and bioavailable N for the crop.

Under the lens: Carbon and energy channels in the soil micro-food web

While carbon flow through soil decomposition channels is well studied, the associated energy fluxes are less considered. In particular, how microbial substrate and energy turnover are linked to higher trophic levels has hardly been investigated to date. Soil nematode communities can serve as a model group to address this knowledge gap. As important microbial grazers nematodes hold a central position in soil food webs. The present study relates the structure and function of the micro-food web to microbial carbon and energy use efficiency. Microbial biomass (phospholipid fatty acids), activity (substrate-induced growth) and energy flow (substrate-induced heat release) are linked with the nematode fauna, i.e. population density, ecological indices and metabolic footprints. Soils from four agricultural sites in central Europe were compared, either long-term unfertilized or fertilized with farmyard manure.Environmental conditions (e.g. soil nutrients, moisture) influenced microbial biomass, nematode population density and decomposition channels more than fertilization. While all arable soils were dominated by bacteria, at sites with moderate nutrient status fungi also contributed to carbon and energy flow. The life strategies of microorganisms and nematodes showed a comparable pattern: nutrient-poor unfertilized soils comprised more K-strategists, characterized by an efficient but slow metabolism. Conversely, nutrient-rich soils represented fast cycle systems, dominated by copiotrophic microorganisms and strong r-strategists among nematodes. Across soils, microbial energy use efficiency was quite balanced compared to carbon use efficiency. Remarkably, nematode functional groups were closely linked to microbial substrate turnover efficiency, suggesting nematode faunal analysis as a useful proxy. The nematode Channel Index, a measure for soil decomposition channel activity, is proposed as a tool for mapping microbial carbon and energy turnover.

Long-term vegetation succession enhances the network complexity and stability of soil protozoan communities

Long-term vegetation succession is critical for the improvement of environmental quality and the restoration of ecosystem functions. As key links in the micro-food web, protozoa are widespread in the soil and are important participants in nutrient cycling and energy transfer. However, the effects of vegetation succession on soil protozoan communities compared to those on other soil microbial communities, such as bacteria and fungi, remain largely unknown. Here, a long-term vegetation succession sequence of approximately 160 years was selected to investigate the evolutionary characteristics and drivers of soil protozoan diversity, network stability, and community assembly processes. Soil protozoan alpha diversity increased significantly with vegetation succession, and beta diversity differed significantly between early and late successional stages. Microbial biomass is a key driver of soil protozoan diversity. In addition, the network robustness and complexity of soil protozoa increased significantly and stabilized during late successional stages. Soil microbes played a direct role in protozoan network stability, whereas abiotic factors played an indirect role, reflecting the trophic cascade in soil micro-food webs. The relative contributions of deterministic processes to the community assembly of soil protozoa increased progressively with vegetation succession, owing to multiple eco-selective mechanisms arising from environmental changes. Our results highlight the bottom-up effects of soil microbes on secondary consumer communities during natural restoration, providing new insights into the mechanisms underlying the maintenance of soil micro-food web diversity and stability across environmental gradients.

WITHDRAWN: Long-term warming and decreased precipitation regulated microbial community structure and potential function through enhanced predator-prey relationships in the Tibetan Plateau

Global climate change can shape the interactions among soil microbes and, in turn, mediate ecosystem functions. However, how these interactions were regulated remains to be investigated. This study utilized 16S rRNA, ITS, and 18S rRNA high-throughput sequencing to investigate the effects of simulated warming and precipitation changes on the major components of soil micro-food webs in the Qinghai-Tibetan Plateau through a field experiment. Adonis and non-metric multidimensional scaling (NMDS) analyses showed that compositions of bacteria, fungi and protists were all affected by changes in temperature and precipitation. Correlation and cross-trophic network analyses revealed that warming and decreased precipitation, both separately and together, enhanced the relationships between bacteria and protists, especially protistan predators. We found that the modified stochasticity ratio of the bacterial community assembly was best predicted by protists. The potential functional structures of bacteria were positively correlated with protistan predators under warming and decreased precipitation condition, suggesting enhanced predator-prey relationships between protists and bacteria might further influence the potential functional characteristics of bacterial communities. Our study indicated that climate change altered bacterial compositional and functional structure via enhanced predator-prey interactions. Therefore, in the context of global climate change, broader and more comprehensive studies on protist-regulated soil bacterial and fungal communities are imperative.

Phosphorus addition ameliorates soil micro-food web simplification due to nitrogen enrichment but does not restore nematode community composition

Nitrogen (N) inputs to terrestrial ecosystems are increasing faster than phosphorus (P) inputs, causing N:P imbalances and substantial changes in the diversity and structure of plant, soil microbial, and fauna communities. The responses of the soil micro-food web to N:P imbalances remain unclear but are crucial to understanding the impacts on ecosystem functioning. We investigated the effect of N and P additions on plant communities, edaphic properties, and nematode species diversity and composition, and assessed shifts in soil micro-food web complexity using nematode-based indices and structural equation modeling (SEM) in a nine-year nutrient addition experiment in an alpine meadow on the Tibetan Plateau. We found that N addition decreased the structure index (SI) and enrichment index (EI), indicating that N enrichment led to a simplification of the soil micro-food web. The addition of P alleviated the negative effect of N on soil micro-food web complexity but did not restore nematode community composition. The SEM supported the hypothesis that N addition simplified soil micro-food webs through increases in the N:P ratio and associated reductions in plant species richness, while P addition ameliorated the effect of N by decreasing the soil N:P ratio and increasing plant species richness. Our results highlight the positive effects of plant diversity in maintaining the complexity of the soil micro-food web. Our findings provide information that can be used to guide sustainable management and restoration of grasslands to alleviate the projected effects of future N:P imbalances on the soil micro-food web. However, efforts should be made to avoid nutrient deposition given the observed effects on both plant and nematode communities that could not be restored by alleviating the N:P imbalance through P addition.

Disturbance intensity shapes the soil micro-food web compositions and energy fluxes during seven-year land use changes

Soil micro-food webs play an important role in ecosystem functions through energy flow; they are strongly influenced by land use types. Previous studies have typically utilized the space-for-time substitution or single-time sampling method to reflect the land-use change effects by comparing differences among existing land-use types. These methods would increase random error. Research on how synchronized land-use change (starting at the same time and place) influences soil ecological processes and functions is urgently needed. Based on a controlled field experiment and seven years of observations, this study explored the effects of land-use change from natural shrubland to cropland (maize), forage land (tall-grass forage), and economic forest land (walnut plantation) on the community structure and energy dynamics of the soil micro-food webs. Cropland simplified the complexity of the soil food webs compared to the other three land-uses. Forage grassland maintained the highest biomasses of soil total microbes, fungi, and arbuscular mycorrhizal fungi. In addition, economic forest land improved the flow uniformity of the micro-food web by increasing energy transfer from resources to bacterivores, fungivores, and herbivores while decreasing herbivore energy flow to omnivores-predators. Omnivore abundance and nematode diversity were important predictors of total energy flux and flow uniformity of the soil micro-food webs, respectively. In addition, omnivores maintained the complexity of soil micro-food webs by promoting interactions among trophic groups through top-down control. Soil organisms are sensitive to the response of agricultural management and planting time, and it may take several years or more to reach a dynamic equilibrium. Different types and levels of ecosystem disturbance (e.g., tillage and no-tillage, fertilizer rates, aboveground biomass removal intensity) may be the major drivers of soil community during land use change. Our findings highlight the importance of conservation agriculture in maintaining soil food web structure and energy flow for future sustainable land uses, and that promoting omnivore abundance is essential for food web complexity and stability.

Multiple nutrient limitation of the soil micro-food web in a tropical grassland revealed by nutrient-omission fertilization

Although involved in key functions of the terrestrial ecosystems, the activity and the diversity of soil microorganisms can be severely limited by energy and nutrients in weathered tropical soils. To optimize nutrient cycling for crop nutrition, assessing which nutrients limit the activity of the microbial food web is thus essential. This was our aim in this study carried out on a tropical ferrallitic soil from a natural grassland in Madagascar. For this purpose, we employed an innovative nutrient-omission approach in microcosms to test the distinct effects of omitting C, six nutrients (N, P, K, S, Ca, Mg) and a cocktail of micronutrients (B, Mn, Cu, Na and Mo) on the composition, biomass and activities of the microbial community and on the abundance and biomass of their nematode grazers. C and P were identified as primary limitations, but other nutrients (N, Mg and S) played significant roles as co-limiting factors. Some bacterial and fungal taxa were significantly associated to specific nutrient deficiencies and can act as biological indicators. Additionally, the abundance and biomass of microbial-feeding nematodes provided valuable insights into the responses of the soil microbial community to nutrient deficiencies. These findings contribute to our understanding of nutrient dynamics and microbial community growth in tropical grassland ecosystems and have implications for sustainable crop fertility management and ecosystem ecology in similar environments.

Trophic interactions in soil micro-food webs drive ecosystem multifunctionality along tree species richness.

Rapid biodiversity losses under global climate change threaten forest ecosystem functions. However, our understanding of the patterns and drivers of multiple ecosystem functions across biodiversity gradients remains equivocal. To address this important knowledge gap, we measured simultaneous responses of multiple ecosystem functions (nutrient cycling, soil carbon stocks, organic matter decomposition, plant productivity) to a tree species richness gradient of 1, 4, 8, 16, and 32 species in a young subtropical forest. We found that tree species richness had negligible effects on nutrient cycling, organic matter decomposition, and plant productivity, but soil carbon stocks and ecosystem multifunctionality significantly increased with tree species richness. Linear mixed-effect models showed that soil organisms, particularly arbuscular mycorrhizal fungi (AMF) and soil nematodes, elicited the greatest relative effects on ecosystem multifunctionality. Structural equation models revealed indirect effects of tree species richness on ecosystem multifunctionality mediated by trophic interactions in soil micro-food webs. Specifically, we found a significant negative effect of gram-positive bacteria on soil nematode abundance (a top-down effect), and a significant positive effect of AMF biomass on soil nematode abundance (a bottom-up effect). Overall, our study emphasizes the significance of a multitrophic perspective in elucidating biodiversity-multifunctionality relationships and highlights the conservation of functioning soil micro-food webs to maintain multiple ecosystem functions.

Spatial distribution and diversity of the heterotrophic flagellates in the Cosmonaut Sea, Antarctic

As predators of bacteria and viruses and as food sources for microzooplankton, heterotrophic flagellates (HFs) play an important role in the marine micro-food web. Based on the global climate change’s impact on marine ecosystems, particularly sea ice melting, we analyzed the community composition and diversity of heterotrophic flagellates, focusing on the Antarctic Cosmonaut Sea. During the 36th China Antarctic research expedition (2019-2020), we collected seawater samples, subsequently analyzing HFs through IlluminaMiSeq2000 sequencing to assess community composition and diversity. Notable variations in HFs abundance were observed between the western and eastern sectors of the Cosmonaut Sea, with a distinct concentration at a 100-meter water depth. Different zones exhibited diverse indicators and dominants taxa influenced by local ocean currents. Both the northern Antarctic Peninsula and the western Cosmonaut Sea, where the Weddell Eddy and Antarctic Land Slope Current intersect, showcased marine stramenopiles as dominant HFs species. Our findings offer insights into dominant taxa, spatial distribution patterns among heterotrophic flagellates, correlations between taxa distribution and environmental factors, and the exploration of potential indicator taxa.

Soil micro-food webs at aggregate scale are associated with soil nitrogen supply and crop yield

Crop production is strongly impacted by soil nitrogen supply, which is regulated by soil micro-food webs consisting of nematodes, protists, fungi and bacteria. However, responses of soil micro-food webs to fertilization at the aggregate scale and their relationships with soil nitrogen supply and crop yield remain unclear. To address these knowledge gaps, we investigated soils subjected to typical fertilization treatments in a long-term field experiment, which included: no fertilizer control (CK); synthetic fertilizers (NPK); partial synthetic nitrogen replacement with pig slurry (OMNPK) or crop straw (RSDNPK) and incorporating biochar with synthetic fertilizers (BCNPK). The composition of different biological groups was changed significantly by fertilization, with bacteria under RSDNPK being more responsive than other groups. The co-occurrence network of the soil micro-food web had more edges in microaggregates than those in large and small macroaggregates due to the significantly higher nodal degree of bacteria and fungi. On average, 76 % of the topologically important (TI) taxa in the networks were bacteria. In modules where nematodes and protists were present, 8 %-100 % of them were attributed to TI taxa while the ratio for bacteria was 3 %-7 %. Specific assemblages of functionally important (FI) taxa covering all tested biological groups at the aggregate scale were positively associated with soil labile nitrogen, related enzymes and crop yield. Random forest regression further indicates the high importance of these FI taxa to crop yield. However, less than 20 % of them were attributed to TI taxa of the networks. In summary, distinct assemblages of taxa covering multiple trophic levels regulate network topology and soil nitrogen supply + crop yield, which provides insights for targeted manipulation of soil micro-food webs through knowledge-based fertilization to harness the biological potential of cropland soils.

Long-term conservation tillage enhances microbial carbon use efficiency by altering multitrophic interactions in soil

Microbial carbon (C) use efficiency (CUE) plays a key role in soil C storage. The predation of protists on bacteria and fungi has potential impacts on the global C cycle. However, under conservation tillage conditions, the effects of multitrophic interactions on soil microbial CUE are still unclear. Here, we investigate the multitrophic network (especially the keystone ecological cluster) and its regulation of soil microbial CUE and soil organic C (SOC) under different long-term (15-year) tillage practices. We found that conservation tillage (CT) significantly enhanced microbial CUE, turnover, and SOC (P < 0.05) compared to traditional tillage (control, CK). At the same time, tillage practice and soil depth had significant effects on the structure of fungal and protistan communities. Furthermore, the soil biodiversity of the keystone cluster was positively correlated with the microbial physiological traits (CUE, microbial growth rate (MGR), microbial respiration rate (Rs), microbial turnover) and SOC (P < 0.05). Protistan richness played the strongest role in directly shaping the keystone cluster. Compared with CK, CT generally enhanced the correlation between microbial communities and microbial physiological characteristics and SOC. Overall, our results illustrate that the top-down control (the organisms at higher trophic levels affect the organisms at lower trophic levels) of protists in the soil micro-food web plays an important role in improving microbial CUE under conservation tillage. Our findings provide a theoretical basis for promoting the application of protists in targeted microbial engineering and contribute to the promotion of conservation agriculture and the improvement of soil C sequestration potential.

Long-term phosphorus fertilization reveals the phosphorus limitation shaping the soil micro-food web stability in the Loess Plateau.

The intricate decomposition pathways within soil micro-food webs are vital for cycling soil organic carbon and nutrients, influencing the quality, productivity, and sustainability of soil systems. However, the impact of diverse phosphorus addition on these organic decomposition pathways still needs to be explored. In an 8-year experiment, phosphorus (P) fertilizer was added at varying levels (0 kg ha-1, CK; 60 kg ha-1, P60; 120 kg ha-1, P120; and 180 kg ha-1, P180), to investigate the response of the soil micro-food web. The results revealed a significant effect of phosphorus addition on soil microorganisms and nematodes, with P60 exerting a greater influence than other treatments. At P60, the Shannon index of nematodes and fungi surpassed other treatments, indicating higher diversity, while the Shannon index of bacteria was lower. The Chao1 index of bacteria and fungi at P60 was higher, contrasting with the lower index for nematodes. Metabolic footprints of bacterivores and omnivores-predators (BFMF and OPMF) were higher at P60, while metabolic footprints of fungivores and plant parasites (FFMF and PPMF) were lower, signifying altered energy flow. Functional metabolic footprints and energy flow analysis unveiled a stable soil micro-food web structure at P60, with enhanced energy conversion efficiency. Network analysis illustrated positive correlations between fungi, fungivorous nematodes (FF), and omnivorous-predatory nematodes (OP) at P60, while P120 and P180 showed positive correlations among bacteria, bacterivorous nematodes (BF), and OP. Path analysis underscored the higher contribution rate of BF-C, FF-C, and OP-C to soil organic carbon at P60 compared with P120 and P180. These findings suggest that nutrient interactions between fungi and nematodes regulate soil micro-food web decomposition under low phosphorus concentrations. In contrast, interactions between bacteria and nematodes dominate at high phosphorus concentrations. The study indicates that adding phosphorus has nuanced bottom-up effects, intricately shaping the structure and activity of the pathways and underscoring the need for a comprehensive understanding of nutrient dynamics in soil ecosystems.

Soil enzyme profile analysis for indicating decomposer micro-food web.

Highly diverse exoenzymes mediate the energy flow from substrates to the multitrophic microbiota within the soil decomposer micro-food web. Here, we used a "soil enzyme profile analysis" approach to establish a series of enzyme profile indices; those indices were hypothesized to reflect micro-food web features. We systematically evaluated the shifts in enzyme profile indices in relation to the micro-food web features in the restoration of an abandoned cropland to a natural area. We found that enzymatic C:N stoichiometry and decomposability index were significantly associated with substrate availability. Furthermore, the higher Shannon diversity index in the exoenzyme profile, especially for the C-degrading hydrolase, corresponded to a greater microbiota community diversity. The increased complexity and stability of the exoenzyme network reflected similar changes with the micro-food web networks. In addition, the gross activity of the enzyme profile as a parameter for soil multifunctionality, effectively predicted the substrate content, microbiota community size, diversity, and network complexity. Ultimately, the proposed enzymic channel index was closely associated with the traditional decomposition channel indices derived from microorganisms and nematodes. Our results showed that soil enzyme profile analysis reflected very well the decomposer food web features. Our study has important implications for projecting future climate change or anthropogenic disturbance impacts on soil decomposer micro-food web features by using soil enzyme profile analysis.

Effects of alpine meadows with different degradation gradients on the stability of the soil micro-foodweb in the Tibetan Plateau

Resource-transfer connections among bacteria, fungi, and microbivorous nematodes play an integral role in the decomposition pathways of soil micro-foodweb. Exploring the response of soil bacteria, fungi, and nematodes to grassland degradation is crucial for predicting the direction and trajectory of degradation. However, the knowledge about soil bacteria-fungi-nematode interactions in ecosystem function and nutrient cycling must be highlighted properly, especially in the Qinghai-Tibet Plateau. Therefore, this study focuses on four alpine meadows at different degenerate gradients (non-degraded grassland, slightly degraded grassland, moderately degraded grassland, and severely degraded grassland) on the Qinghai-Tibet Plateau. The investigation of soil bacteria-fungi-nematode interactions uses high-throughput sequencing and correlation network analysis. The results demonstrate significant variations in the composition of soil nematode genera, and bacterial and fungal phyla, across different degradation stages. Moreover, the diversity of nematodes, bacteria and fungi declined as grassland degradation worsened. Principal component analysis (PCA) revealed that alpine meadows with varying degradation gradients significantly influenced the community structure of bacteria, fungi, and nematodes. Mantel analysis indicated that soil water content (P < 0.05), total phosphorus (P < 0.05), and total nitrogen (P < 0.05) were the primary soil properties affecting the soil bacterial community. Similarly, available soil potassium (P < 0.05), microbial biomass carbon (P < 0.05), and microbial biomass nitrogen (P < 0.05) were the main soil factors influencing the soil fungal community. In contrast, the correlation between individual soil characteristics and soil nematodes did not reach a significant level, suggesting that a blend of physical and chemical properties regulates the soil nematode community. As grassland degradation intensified, the number of links in the interaction network of bacteria, fungi, and nematodes increased. Particularly, the networks between fungi and nematodes expanded, and the key species within each network varied with the different stages of grassland degradation. Concurrently, soil micro-foodweb decomposition pathways shifted. In the ND treatment, bacteria and fungi jointly dominated the degradation channels of the soil micro-food web, while the LD and MD treatments mainly dominated the degradation channels of fungi. On the other hand, SD treatment was dominated by bacterial degradation channels. This research adds to our theoretical understanding of meadow soil micro-foodwebs and the sustainable use of alpine grasslands in the Qinghai-Tibet Plateau.