Abundance Of Methanogens Research Articles

Long-Term Grazing and Nitrogen Management Impacted Methane Emission Potential and Soil Microbial Community in Grazing Pastures.

Achieving sustainable development in livestock agriculture by balancing livestock production, reduction of greenhouse gas (GHG) emissions, and effective utilization of nitrogen nutrient has indeed been challenging. This study investigated the long-term effects of continuous cattle grazing, stocking rates, and fertilization regimens on methane (CH4) emissions, soil microbial communities, and soil organic carbon (SOC) stocks in Bermudagrass pastures in East Texas, USA. Pastures were subjected to high or low stocking rates for over 50 years, with further subdivision based on fertilization: nitrogen-based fertilizer application or no fertilizer but with the growth of annual clover. Seasonal soil cores (0-60 cm) were collected, and laboratory microcosm incubation studies revealed unexpectedly high in vitro CH4 emissions in surface soils, particularly in the top 0-5 cm soil layer, reaching up to 300 nmol of CH4 mL-1. Higher CH4 emissions and methanogen abundance, along with lower SOC stocks, were observed in pastures subjected to high stocking rates compared to those with low stocking rates and in clover pastures compared to those with N-fertilized ryegrass. On the contrary, in low-stocked, N-fertilized annual ryegrass pastures, methanogen abundance was lowest, CH4 emissions were negligible, and SOC stocks were highest. Furthermore, animal excreta deposition significantly contributed to increased CH4 emissions. Prokaryotic and potential methanotrophic taxa, as compared to fungi, exhibited greater responsiveness to N-fertilization than to cattle stocking treatments with higher levels of methanotrophs observed in pastures subjected to high stocking rates and clover growth. This study suggests that strategic management practices such as optimal grazing and nitrogen management could effectively mitigate CH4 emissions in grazing lands.

Accelerating electron transfer reduces CH4 and CO2 emissions in paddy soil.

As an accelerated electron transfer device, the influence of microbial electrochemical snorkel (MES) on soil greenhouse gas production remains unclear. Electron transport is the key to methane production and denitrification. We found that the N2O amount of the MES treatment was comparable to the control however the cumulative CO2 and CH4 emissions were reduced by 50% and 41%, respectively. The content of Fe2+ in MES treatment increased by 31%, which promoted the electron competition of iron reduction to methanogenesis. Furthermore, the competition among iron-reducing, nitrifying and denitrifying bacteria reduced the abundance of methanogens by 19-20%. Additionally, the MES treatment decreased the abundance of genes associated with hydrogen methanogenesis pathway by 6-19%, and inhibited the further conversion of acetyl-CoA into CH4 for acetoclastic methanogenesis. This study reveals effects of accelerating electron transfer on greenhouse gas emission, and provides a novel strategy for reducing greenhouse gas emissions in paddy soil.

Anti-Methanogenic Potential of Seaweeds and Impact on Feed Fermentation and Rumen Microbiome In Vitro.

A series of in vitro studies were conducted to explore the anti-methanogenic potential of five seaweeds collected from the Indian sea and to optimize the level(s) of incorporation of the most promising seaweed(s) into a straw and concentrate diet to achieve a significant reduction in methane (CH4) production without disturbing rumen fermentation characteristics. A chemical composition analysis revealed a notable ash content varying between 55 and 70% in seaweeds. The crude protein content was highly variable and ranged between 3.25 and 15.3% of dry matter. Seaweeds contained appreciable concentrations of tannins and saponins. Among the seaweeds, Spyridia filamentosa exhibited significantly higher CH4 production, whereas the percentage of CH4 in total gas was significantly lower in the cases of Kappaphycus alvarezii and Sargassum wightii. The ranking of seaweeds in terms of CH4 production (mL/g OM) is as follows: Sargassum wightii < Kappaphycus alvarezii < Acanthophora specifera < Padina gymnospora < Spyridia filamentosa. A remarkable decrease of 31-42% in CH4 production was recorded with the incremental inclusion of Kappaphycus alvarezii at levels of 3-5% of the dry matter in the diet. The addition of Sargassum wightii led to a significant decrease of 36-48% in CH4 emissions when incorporated at levels of 4-5% of dry matter, respectively. The findings of this study revealed a significant decrease in the numbers of total protozoa and Entodinomorphs, coupled with increasing abundances of sulfate-reducing microbes and minor methanogens. Metagenome data revealed that irrespective of the seaweed and treatment, the predominant microbial phyla included Bacteroidota, Bacillota, Pseudomonadota, Actinomycetota, Fibrobacterota, and Euryarchaeota. The prevalence of Methanobrevibacter was similar across treatments, constituting the majority (~79%) of the archaeal community. The results also demonstrated that the supplementation of Kappaphycus alvarezii and Sargassum wightii did not alter the feed fermentation pattern, and therefore, the reduction in CH4 production in the present study could not be attributed to it. Animal studies are warranted to validate the extent of reduction in CH4 production and the key processes involved by supplementation with Kappaphycus alvarezii and Sargassum wightii at the recommended levels.

A Meta-Analysis of Dietary Inhibitors for Reducing Methane Emissions via Modulating Rumen Microbiota in Ruminants.

Rumen methane emissions (RMEs) significantly contribute to global greenhouse gas emissions, underscoring the essentials to identify effective inhibitors for RME mitigation. Despite various inhibitors shown potential in reducing RME by modulating rumen microbes, their impacts include considerable variations and inconsistency. We aimed to quantitatively assess the impacts of various methane inhibitors on RME, rumen microbial abundance, and fermentation in ruminants. Additionally, the relationships between microbial abundance and RME were examined through meta-regressions. Meta-analysis and meta-regression were conducted to assess the impacts of methane inhibitions, including 3-nitrooxypropanol, ionophores, nitrate, triglycerides, phytochemicals, and co-inhibitors, on RME and rumen microbiota in beef, dairy cattle, and sheep. Analyses of 922 datasets from 274 experiments revealed that inhibitors, except ionophores (P = 0.43), significantly reduced RME, with co-inhibitors displaying the highest efficacy (standardized mean difference -2.1, P < 0.01). Inhibitors' effects were more pronounced in sheep relative to beef and dairy cattle. Inhibitors decreased the abundance of ciliates and methanogens, with positive correlations observed between Dasytrichidae (P = 0.05), Entodinomorphs (P ≤ 0.001), Methanobacteriale (P = 0.001), and fungi (P < 0.01) with RME. Among inhibitors, triglycerides exhibited simultaneous reduction in methanogen, ciliate, and fungal abundances. 3-Nitrooxypropanol and triglycerides increased H2 in the rumen whereas reducing the acetate-propionate ratio, especially in beef. The H2 emission was negatively correlated (P < 0.01) and acetate-to-propionate ratio was positively correlated (P < 0.001) with RME. Microbes, including Dasytrichidae, Entodinomorphs, Methanobacteriale, and fungi, significantly attribute to RME, and co-inhibitors have the highest efficacy in limiting RME and reducing microbial abundances. This study underscores the roles of both host and microbiota in modulating the inhibitor efficacy in RME, informing the refinement of rumen additives to mitigate RME from meat and milk production.

The impact of elevated CO2 on methanogen abundance and methane emissions in terrestrial ecosystems: A meta-analysis

Methane (CH4), one of the major greenhouse gases, plays a pivotal role in global climate change. Elevated CO2 concentration (eCO2) increases soil carbon storage, which may provide a valuable material base for soil methanogenic microorganisms and stimulating their growth, thereby ultimately affecting CH4 emissions. Therefore, to comprehend the effect of eCO2 on CH4 emissions, we conducted a meta-analysis encompassing 398 datasets from 59 publications (total of 50 sample sites). The results show that eCO2 promotes both the abundance of the functional methanogenic gene mcrA and CH4 emissions. However, this enhancement is modulated by a range of factors, such as the eCO2 duration, land use types and soil texture, and there are significant interactions. This study offers new insights into the effects of eCO2 on CH4 emissions across diverse ecosystems and the underlying driving forces, vital for predicting the response of global terrestrial ecosystems in the face of future climate change.

Phenotypic traits related to methane emissions from Holstein dairy cows challenged by low or high forage proportion

Limited literature is available identifying phenotypical traits related to enteric methane (CH4) production from dairy cows, despite its relevance in relation to breeding for animals with a low CH4 yield (g/kg DMI), and the derived consequences hereof. This study aimed to investigate the relationships between CH4 yield and different animal phenotypes when 16 2nd parity dairy cows, fitted with a ruminal cannula, were fed 2 diets differing in forage:concentrate ratio in a crossover design. The diets had either a low forage proportion (35% on DM basis, F35) or a high forage proportion (63% on DM basis, F63). Gas exchange was measured by means of indirect calorimetry. Spot samples of feces were collected, and indigestible NDF (INDF) was used as an internal marker to determine total-tract digestibility. In addition, ruminal evacuations, monitoring of chewing activity, determination of ruminal VFA concentration, analysis of relative abundance of methanogens, and measurement of liquid passage rate were performed. Statistical differences were analyzed by a linear mixed model with diet, days in milk, and period as fixed effects, and cow as random effect. The random cow estimates (RCE) were extracted from the model to get the Pearson correlations (r) between RCE of CH4 yield with RCE of all other variables measured, to identify possible phenotypes related to CH4 yield. Significant correlations were observed between RCE of CH4 yield and RCE of OM digestibility (r = 0.63) and ruminal concentration of valeric acid (r = -0.61), acetic acid (r = 0.54), ammonium (r = 0.55), and lactic acid (r = ‒0.53). Additionally, tendencies were observed for correlations between RCE of CH4 yield and RCE of H2 yield in g/kg DM (r = 0.47, P = 0.07), and ruminal isobutyric acid concentration (r = 0.43, P = 0.09). No correlations were observed between RCE of CH4 yield and RCE of ruminal pool sizes, milk data, urinary measurements, or chewing activity. Cows had a lower DMI and ECM, when they were fed F63 compared with F35. Cows fed F63 had higher NDF digestibility, CH4 emissions (g/d, g/kg of DMI, and g/kg of ECM), ruminal concentration of acetic acid, ruminal pH, degradation rate of digestible NDF (DNDF, %/h), and longer rumen retention time (h). Also, rumination and total chewing time (min/kg DMI) were higher for cows fed F63. The results in the present study emphasize the positive relation between cow's ability to digest OM and their CH4 emissions. The derived consequences of breeding for lower CH4 emission might be cows with lower ability to digest OM, but more studies are warranted for further documentation of this relationship.

Impact of biochar prepared at different pyrolysis temperatures on the methane production and microbial community structure of food waste anaerobic digestion

Biochars were prepared through the pyrolysis of sawdust at 300 °C, 500 °C, and 700 °C, respectively, under oxygen-limited conditions. The basic physicochemical properties of biochars were explored by scanning electron microscope (SEM), energy dispersive spectroscopy (EDS), surface area and porosity analyzer (BET), and Fourier-transform infrared spectrometer (FTIR). The effects of biochar addition on the methane yield and microbial community structure of anaerobic digestion of food waste were also investigated. SEM images showed that biochar had a honeycomb-like pore structure, EDS analysis showed that the C content in the biochar tended to increase, and the O contents tended to decrease with the increasing temperature. The specific surface area of biochars increased from 1.2014 m2/g (300 °C) to 326.8435 m2/g (700 °C). FTIR analysis showed that the number of different surface functional groups decreased with the increasing temperature. The addition of biochar could increase the cumulative methane volume by 11.63%–25.18%. High-throughput sequencing results showed that biochar addition could increase the relative abundance of Bacteroidetes, Chloroflexi, Firmicutes, Proteobacteria, and Spirochaetota, which were associated with the degradation of refractory organic matters. Meanwhile, biochar addition could enrich the relative abundance of methanogens participating in direct electron transfer (Methanosaeta and Methanosarcina), and methanogens producing methane through multiple pathways (Methanobacterium and Methanosarcina). The addition of biochar derived at 700 °C significantly increased the relative abundance of Methanobacterium and Methanosarcina from 1.96% and 0.70% (control group) to 32.68% and 64.69%, respectively and improved methane production by transforming acetoclastic/hydrogenotrophic methanogenic pathways to more metabolically diverse methanogenic pathways.

Methanogens dominate methanotrophs and act as a methane source in aquaculture pond sediments

Aquaculture pond sediments act as hotspots for methane (CH4) emissions; however, knowledge gaps on the regulation of microorganisms hinder our further understanding of methane dynamics in aquaculture pond sediment. Using field sampling and molecular analysis, we examined CH4 fluxes, the methanogenic community composition, and their interaction with methanotrophs to comprehensively understand the methane cycling in sediments of aquaculture ponds in northern China. Compared with a fishing pond without feed inputs, the abundances of methanogens mcrA and methanotrophs pmoA genes increased significantly in aquaculture ponds sediments. The dominant methanogens were Methanothrix, Methanoregula, and Methanolinea, and the α-diversity indices of methanogens demonstrated higher levels in 0–5 cm surface sediment. The methanotrophs were dominated by Methylocystis, Methylocaldum, and Methylobacter, and the α-diversity indices of methanotrophs showed no significant difference. The total organic carbon (TOC) contents and oxidation reduction potential (ORP) were the key factors driving methanogenic and methanotrophic communities on methane cycle in aquaculture sediment. The inter-domain ecological network (IDEN) analysis revealed that total number of network nodes, links, connectances, and links per species in the aquaculture sediments presented relatively higher levels, whereas the IDEN modules were fewer. The methanogens dominated in the networks and the interaction of methanogens and methanotrophs was more competitive and complex in aquaculture sediments. These findings highlight the marked methane production in aquaculture sediment, primarily due to the abundance, diversity, and competitive advantage of methanogens over methanotrophic communities.

Effects of Rice Root Development and Rhizosphere Soil on Methane Emission in Paddy Fields.

Paddy fields are important anthropogenic emission sources of methane (CH4). However, it is not clear how rice root development and rhizosphere soil properties affect CH4 emissions. Therefore, we selected rice varieties with similar growth periods but different root traits in the local area. We measured CH4 emission fluxes, cumulative CH4 emissions, root dry weight, root length, and the dissolved organic carbon (DOC), microbial biomass carbon (MBC), redox potential (Eh), ammonium nitrogen (NH4+-N), and nitrate nitrogen (NO3--N) contents in rhizosphere soil. Methanogens and methanotrophs are crucial factors influencing CH4 emissions; thus, their abundance and community composition were also assessed. The result showed that CH4 fluxes of each rice variety reached the peak at tillering stage and jointing-booting stage. The CH4 emissions in tillering stage were the largest in each growth period. CH4 emissions had negative correlations with root length, root dry weight, Eh NO3--N, methanotroph abundance, and the pmoA/mcrA ratio, and positive correlations with NH4+-N, MBC, DOC, and methanogen abundance. Path analysis confirmed methanogens and methanotrophs as direct influences on CH4 emissions. Root development and rhizosphere soil properties affect CH4 emissions indirectly through these microbes. This study suggests that choosing rice varieties with good root systems and managing the rhizosphere soil can effectively reduce CH4 emissions.

Rape straw-driven mitigation of greenhouse gas emissions and key bacterial communities during the treatment of pig farm manure in the ectopic fermentation system

Rice chaff, sawdust, and rape straw are commonly used as padding materials in the ectopic fermentation system. However, the characteristics of greenhouse gas emissions the ectopic fermentation system using rice chaff, sawdust, as well as the effects of rape straw on these emissions, remain unclear. This study investigated the effects of different proportions of rape straw (0, 10%, 25%, and 50%) on greenhouse gas emission characteristics in this system. The experimental results indicated that the treatment group containing rice chaff, sawdust, and more than 25% rape straw significantly increased fermentation temperature, prolonged the thermophilic phase, enhanced the maturity of fermentation products, and altered microbial community structures compared to the control group with only rice chaff and sawdust. Redundancy analysis revealed that replacing rice chaff and sawdust with 50% rape straw significantly decreased the relative abundance of methanogens (e.g., Methanospirillum and Methanobacterium) and denitrifying species (e.g., Denitrificimonas caeni and Aliarcobacter butzleri), resulting in reductions in cumulative emissions of CH4 and N2O by up to 44.6% and 84.9%, respectively, compared to the treatment group with rice chaff and sawdust alone. The absolute abundance of the nosZ gene was positively correlated with N2O emissions. Therefore, rape straw has been demonstrated to be an effective padding material that reduces CH4 and N2O emissions while enhancing the maturity of fermentation products in the ectopic fermentation system.

Coupled reduction in arsenic methylation and methanogenesis with silicate amendment in arsenic-enriched paddy soils

Methanogens play an important role in the demethylation of arsenic. Soil amendments that inhibit methanogens can increase dimethylarsinic acid (DMA), which is responsible for straighthead disease in rice. A decrease in methanogenesis caused by silicate fertilizer may increase DMA concentration in paddy soils and rice grains; the relationship between these two factors and their impacts on DMA concentration remains unclear. We applied silicate fertilizer (2 Mg ha−1) to japonica and indica rice grown on arsenic-spiked soils and found a simultaneous reduction in methane emissions and pore-water DMA concentration, compared to no-silicate fertilization. Gene and transcript copies of mcrA and arsM, as well as dominant methanogens and arsenic-methylating microbes decreased significantly with silicate fertilization. However, the sulfate-reducing bacteria and the gene and transcript copies of dsrB did not change significantly in response to the application of silicate fertilizer to paddy soils. The abundance of arsenic methylating microbes was significantly and positively correlated with the abundance of methanogens, but not with the abundance of sulfate-reducing bacteria. Methylomonas and Methylobacter, which harbor the arsM gene, were suppressed under silicate fertilization, suggesting that they have the potential to methylate As and play a crucial role in reducing pore-water DMA in As-enriched flooded paddy soils. Increasing Fe concentration, soil pH, and Eh value decreased pore-water DMA concentration, while decreasing arsenite concentration, arsM and mcrA gene abundance decreased it. While silicate fertilization decreased arsenite and DMA concentrations in pore-water, it had no significant effect on rice DMA content, but significantly decreased arsenite content. Results reveal that methanogens and arsenic-methylating microbes have a synergistic relationship under silicate fertilization that facilitates a significant reduction in methane emissions and DMA concentration in As-enriched paddy soils.

Warming increases CH4 emissions from rice paddies through shifts in methanogenic and methanotrophic communities

Warming often stimulates methane (CH4) emissions from rice paddies, one of the largest anthropogenic sources of CH4 emissions. However, the responses of methanogenic and methanotrophic communities to warming, particularly within active communities, remain unclear. Therefore, based on a field warming experiment in a rice-wheat system, we investigated the effects of warming on methanogenic and methanotrophic communities, using the DNA stable-isotope probing technology. Our results indicated that warming increased CH4 emissions by 27–49% over two rice growing seasons compared to ambient conditions. Warming significantly increased the abundance of methanogens by 53%, whereas did not affect activities of methanogens and active methanogenic community. Conversely, warming did not influence the abundance of methanotrophs, but reduced activities of methanotrophs by 44%. Notably, warming led to a significant rise in the relative abundance of the active type II methanotrophic community, which exhibits lower CH4 oxidation efficiency. These findings suggest that the observed increase in CH4 emissions under warming conditions is primarily driven by the enhanced abundance of methanogens and the increased presence of less efficient active type II methanotrophs. This study underscores the critical role of active microbial communities in understanding and managing CH4 emissions from rice paddies in a warming world.

Effects of Fallow Season Water and Straw Management on Methane Emissions and Associated Microorganisms

The effects of fallow season water and straw management on methane (CH4) emissions during the fallow season and the subsequent rice-growing season are rarely reported, and the underlying microbial mechanisms remain unclear. A field experiment was conducted with four treatments: (1) fields flooded in both the fallow and rice seasons (FF), (2) fields drained in the fallow season and flooded in the rice season (DF), (3) FF with straw retention (FFS), and (4) DF with straw retention (DFS). The CH4 emissions in fields under different water and straw treatments were monitored using the static closed chamber method. Methanogenic and methanotrophic communities in these fields were examined using terminal restriction fragment length polymorphism (T-RFLP) analysis based on the mcrA gene and pmoA gene encoding methyl coenzyme M reductase and particulate methane monooxygenase, respectively. The results showed that CH4 emissions were significantly affected by water management, straw retention, season, and their interactions. Over 80% of CH4 emissions occurred during the rice season. Field drainage during the fallow season reduced CH4 emissions by 47.0% and 53.8% with and without straw during the rice season, respectively. Water management altered the abundance and composition of methanogens and methanotrophs, whereas the effects of straw retention were less pronounced. The quantitative polymerase chain reaction (qPCR) assay revealed that field drainage in the fallow season decreased the mcrA gene abundance by 30.0% and 23.2% with and without straw in rice season, respectively, and increased the pmoA gene abundance by 108.9% and 213.7% with and without straw in rice season, respectively. CH4 flux was significantly positively associated with mcrA gene copy number and the ratio of mcrA to pmoA gene copy number, whereas it was significantly negatively correlated with the pmoA gene copy number. Results indicated that fallow drainage greatly decreased CH4 emission not only during the fallow season but also during the subsequent rice season by altering the community composition of methanogens and methanotrophs. These findings provide scientific insight into the role of water and straw management in controlling CH4 emissions through microbial community dynamics.

Combined metabolomic and microbial community analyses reveal that biochar and organic manure alter soil C-N metabolism and greenhouse gas emissions

The use of biochar to reduce the gas emissions from paddy soils is a promising approach. However, the manner in which biochar and soil microbial communities interact to affect CO2, CH4, and N2O emissions is not clearly understood, particularly when compared with other amendments. In this study, high-throughput sequencing, soil metabolomics, and quantitative real-time PCR were utilized to compare the effects of biochar (BC) and organic manure (OM) on soil microbial community structure, metabolomic profiles and functional genes, and ultimately CO2, CH4, and N2O emissions. Results indicated that BC and OM had opposite effects on soil CO2 and N2O emissions, with BC resulting in lower emissions and OM resulting in higher emissions, whereas BC, OM, and their combined amendments increased cumulative CH4 emissions by 19.5 %, 31.6 %, and 49.1 %, respectively. BC amendment increased the abundance of methanogens (Methanobacterium and Methanocella) and denitrifying bacteria (Anaerolinea and Gemmatimonas), resulting in an increase in the abundance of mcrA, amoA, amoB, and nosZ genes and the secretion of a flavonoid (chrysosplenetin), which caused the generation of CH4 and the reduction of N2O to N2, thereby accelerating CH4 emissions while reducing N2O emissions. Simultaneously, OM amendment increased the abundance of the methanogen Caldicoprobacter and denitrifying Acinetobacter, resulting in increased abundance of mcrA, amoA, amoB, nirK, and nirS genes and the catabolism of carbohydrates [maltotriose, D-(+)-melezitose, D-(+)-cellobiose, and maltotetraose], thereby enhancing CH4 and N2O emissions. Moreover, puerarin produced by Bacillus metabolism may contribute to the reduction in CO2 emissions by BC amendment, but increase in CO2 emissions by OM amendment. These findings reveal how BC and OM affect greenhouse gas emissions by modulating soil microbial communities, functional genes, and metabolomic profiles.

Response of food waste anaerobic digestion to the dimensions of micron-biochar under 30 g VS/L organic loading rate: Focus on gas production and microbial community structure

Biochar modification is an effective approach to enhance its ability to promote anaerobic digestion (AD). Focusing on the physical properties of biochar, the impact of different particle sizes of biochar on AD of food waste (FW) at high organic loading rate (OLR) was investigated. Four biochar with different sizes (40–200 mesh) were prepared and used in AD systems at OLR 30 g VS/L. The research results found that biochar with a volume particle size of 102 μm (RBC-P140) had top-performance in promoting cumulative methane production, increasing by 13.20% compared to the control group. The analysis results of the variety in volatile acids and alkalinity in the system did not show a correlation with the size of biochar, but small size has the potential to improve the environmental tolerance of the system to high acidity. Microbial community analysis showed that the abundance of aceticlastic methanogen and the composition of zoogloea were optimized through relatively small-sized biochar. Through revealing the effect of biochar particle size on AD system at high OLR, this work provided theoretical guidance for regulating fermentation systems using biochar.

Controlling Methane Ebullition Flux in Cascade Reservoirs of the Upper Yellow River by the Ratio of mcrA to pmoA Genes

Reservoirs are an important source of methane (CH4) emissions, but the relative contribution of CH4 ebullition and diffusion fluxes to total fluxes has received little attention in the past. In this study, we systematically monitored the CH4 fluxes of nine cascade reservoirs (Dahejia, Jishixia, Huangfeng, Suzhi, Kangyang, Zhiganglaka, Lijiaxia, Nina, and Longyangxia) in the upper reaches of the Yellow River in the dry (May 2023) and wet seasons (August 2023) using the static chamber gas chromatography and headspace equilibrium methods. We also simultaneously measured environmental physicochemical properties as well as the abundance of methanogens and methanotrophs in sediments. The results showed the following: (1) All reservoirs were sources of CH4 emissions, with an average diffusion flux of 0.08 ± 0.05 mg m−2 h−1 and ebullition flux of 0.38 ± 0.41 mg m−2 h−1. Ebullition flux accounted for 78.01 ± 7.85% of total flux. (2) Spatially, both CH4 diffusion and ebullition fluxes increased from upstream to downstream. Temporally, CH4 diffusion flux in the wet season (0.09 ± 0.06 mg m−2 h−1) was slightly higher than that in the dry season (0.08 ± 0.04 mg m−2 h−1), but CH4 ebullition flux in the dry season (0.38 ± 0.48 mg m−2 h−1) was higher than that in the wet season (0.32 ± 0.2 mg m−2 h−1). (3) qPCR showed that methanogens (mcrA gene) were more abundant in the wet season (5.43 ± 3.94 × 105 copies g−1) than that in the dry season (3.74 ± 1.34 × 105 copies g−1). Methanotrophs (pmoA gene) also showed a similar trend with more abundance found in the wet season (7 ± 2.61 × 105 copies g−1) than in the dry season (1.47 ± 0.92 × 105 copies g−1. (4) Structural equation modeling revealed that the ratio of mcrA/pmoA genes, water N/P, and reservoir age were key factors affecting CH4 ebullition flux. Variation partitioning further indicated that the ratio of mcrA/pmoA genes was the main factor causing the spatial variation in CH4 ebullition flux, explaining 35.69% of its variation. This study not only reveals the characteristics and influencing factors of CH4 emissions from cascade reservoirs on the Qinghai Plateau but also provides a scientific basis for calculating fluxes and developing global CH4 reduction strategies for reservoirs.

Metabolic-methane mitigation by combination of probiotic Escherichia coli strain Nissle 1917 and biochar in rumen fluid in vitro fermentation of dairy cow

In response to climate change, there have been various trials to reduce methane emissions from ruminant animals in the livestock industry, and one of the typical candidates is probiotics used as feed additives. We employed Escherichia coli Nissle 1917 (EcN) as a promising probiotic for the reduction of methane emissions and investigated the molecular mechanism of methane-reducing effects using CRISPR/Cas9. The anaerobic culture of EcN with biochar (BC) could significantly increase acetate and hydrogen production. Additionally, RNA-seq analysis revealed an upregulation in the expression of acetate synthesis genes, namely, pta, poxB, and ackA. Subsequently, treatment of rumen fluid with EcN significantly decreased methane and increased acetate and propionate production, as observed through the analysis of short-chain fatty acids, and these effects could accelerate with additional supplementation of BC. The observation of changes in the microbial composition of rumen fluid following treatment with EcN and BC was made through rumen metagenomic analysis and RT-qPCR. The results revealed an increase in acetogen and propionate producing bacteria abundance and a decrease in methanogen abundance. Based on these findings, the CRISPR/Cas9 system was employed to elucidate the molecular mechanism of the methane-reducing capability of EcN. Gene deletion was performed targeting the genes poxB, ackA, and pta as key factors in acetate pathway in E. coli. The knockout of poxB, ackA, and pta could lead to the elimination of the methane-reduction of EcN as well as acetate-producing abilities. Collectively, the methane reduction ability of EcN in rumen fluid is associated with its acetate production capability, and the addition of BC significantly enhances methane mitigation capability of EcN.

Improving contaminant removal and inhibiting CH4 and H2S emissions from septic tanks: Nitrified human urine as a source of electron acceptor

Septic tanks are widely adopted in decentralized household wastewater treatment systems serving billions of people globally. Due to the lack of effective electron acceptors, insufficient nutrient removal and the emission of harmful gases, e. g. H2S, CH4, etc., are the common drawbacks. In the present work, we attempted to supplement nitrite into septic tanks as an electron acceptor, via nitrifying human urine source-separated from blackwater, to overcome these drawbacks. Partial or complete nitritation of source-separated urine was achieved in a sequencing batch reactor. The addition of nitrified urine into septic tanks improved organic and nitrogen removals in blackwater up to 90 % and 70 %, respectively. The emission of harmful gases from the septic tanks was stably diminished, with more than 75 % of CH4, CO2 and H2S reductions. Nitrite addition significantly reduced the abundance of hydrogenotrophic methanogens in septic tanks. Though the activity of sulfate-reducing bacteria recovered after the initial inhibition upon nitrite addition, the bio-generated H2S was retained in water since the increased wastewater pH after nitrite addition promoted the disassociation of H2S in aqueous solution.

Research progress on the effects of elevated atmospheric CO2 concentration on CH4 emission and related microbial processes in paddy fields.

Paddy fields are recognized as significant sources of methane (CH4) emissions, playing a pivotal role in global climate change. Elevated atmospheric carbon dioxide (CO2) concentrations (e[CO2]) exert a profound influence on the carbon cycling of paddy fields. Understanding the effects of e[CO2] on CH4 emissions, as well as the underlying microbial processes, is crucial for enhancing carbon sequestration and reducing emissions in paddy fields. We reviewed the impacts of e[CO2] on CH4 emission in paddy fields, focusing on the activity, abundance, community structure, and diversity of carbon-cycling-related microbes. We also delineated the roles of various microbial processes in mitigating CH4 emissions under e[CO2], as well as the primary environmental determinants. Overall, the type of e[CO2] experimental platforms, duration of fumigation, concentration gradients, and the methods of CO2 enrichment all influence CH4 emissions from paddy fields. e[CO2] initially stimulates CH4 emissions, which may decrease over time, indicating an adaptability of the methane-emitting microbial community to e[CO2]. This response exhibits a trend of initial attenuation followed by an intensification of the positive effects on CH4 emissions. Experiments with abrupt increase of CO2 concentration might overestimate CH4 emissions. The impact of e[CO2] on microbial processes is predominantly characterized by enhanced activities and abundance of methanogens, aerobic and anaerobic methanotrophs. It significantly alters the community composition and diversity of methanotrophs, with minimal effects on methanogens and anaerobic methanotrophic communities. Finally, we outlined future research directions: 1) Integrated investigations into the effects of e[CO2] on CH4 emissions, methanogenesis, and both aerobic and anaerobic methanotrophs in paddy fields could elucidate the mechanisms underlying the impacts of climate change on CH4 emissions; 2) Long-term studies are essential to understand the mechanisms of e[CO2] on CH4 emissions and associated microbial processes more accurately and realistically; 3) Multi-scale (temporal and spatial), multi-factorial (CO2 concentration, temperature, atmospheric nitrogen deposition, and water management practices), and multi-methodological (observational, data, and model integration) research is necessary to effectively reduce the uncertainties in assessing the response of CH4 emissions in paddy fields and related microbial processes to e[CO2] under future climate change scenarios.

Organic matter accumulation drives methylotrophic methanogenesis and microbial ecology in a hypersaline coastal lagoon

AbstractHypersalinity is common in coastal wetlands throughout warm, tropical, and arid regions. Climate‐induced changes in rainfall, sea level, and anthropogenic modification to basins and coastlines are likely to further increase salinization in these ecosystems. Yet, carbon cycling in hypersaline coastal wetlands is not well understood, and poorly constrained in climate models. In the Coorong, a eutrophic, hypersaline coastal lagoon, recognized as internationally important under the Ramsar convention, organic matter rapidly accumulates in deeper areas of the lagoon, through the settling of fine detrital particles, phytoplankton and suspended sediments. During initial surveys, elevated surface water methane (CH4) concentrations were observed above these fine depositional sediments. To identify the drivers of CH4 production, organic matter and sediment characteristics were assessed in surface sediments. Genetic markers (i.e., 16rDNA and the mcrA functional gene) were used to characterize microbial communities. With multiple lines of evidence, this study identifies organic matter, methanogen abundance, and salinity as important drivers of CH4 production, which is concentrated in depositional zones. Archaea were also more abundant in depositional zones, including methylotrophic methanogens: Methanofastidiosales, Methanomasiliicoccales, Methermicoccaceae, and Methanococcoides. These methanogens were highly correlated to CH4 in porewater, suggesting an influence of methylotrophic methanogenesis. To investigate further, metabolic genes were predicted from 16S rRNA with PICRUSt2. This represents the first effort to analyze CH4 dynamics in the Coorong, underscoring the need to integrate these unique ecosystems into global climate models to enhance our understanding of greenhouse gas dynamics and emissions in a changing climate.