Natural soils without apparent human influence were selected to determine the background concentration of Cd, Cu, Pb, Zn, Cr, and Ni. Reference concentrations of soil heavy metals are necessary for assessing the degree of metal pollution affected by anthropogenic activities and inputs. Samples of uncultivated (i.e., native) soils were collected from central-western Spain. For each element studied, the anomaly thresholds, ‘upper whisker,’ and baseline concentrations were calculated. For each main soil group—Luvisols (Alfisols), Cambisols (Inceptisols) and Leptosols/Regosols (Entisols)—the mean contents and baseline concentrations were also reported. Results of these analyses indicated total soil contents were within the normal global range. Geometric mean contents (mg kg−1) were: Cd, 0.21; Cr, 20.4; Cu, 14.4; Ni, 25.7; Pb, 34.7; and Zn, 42.6. A study on the metal cation available contents (extraction with 1 M ammonium acetate) was also conducted, since total contents in affected soils are only indicative of the pollution degree but not of the real risks involved. Risks of pollution of waters and to human health through food chain transfer are determined by the mobility and availability of elements. Relationships between element concentration and some pedological parameters were also determined, as well as element translocation through the soil profile, and the relationship between available to bound (i.e., free Fe oxyhydroxide fractions) forms. A factorial analysis was performed to determine which factors govern soil metal distribution. Soil forming factor that mainly determined the total contents in soils was the nature of the parent rock. Thus, chalcophile elements, Cu, Zn, Cd, and Pb, were more abundant in soils developed from slates of the palaeozoic basement, which contain abundant pyrite, while siderophile elements, Cr and Ni, were more abundant in soils derived from Fe-rich materials, such as clay-rich Tertiary sediments.
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