Electro-enhanced metal-free boron/peroxymonosulfate (B/PMS) system has demonstrated potential for efficient metal-organic complexes degradation in an eco-friendly way. However, the efficiency and durability of the boron activator are limited by associated passivation effect. Additionally, the lack of suitable methods utilizing in-situ recovery of metal ions liberated from decomplexation causes huge resource waste. In this study, B/PMS coupled with a customized flow electrolysis membrane (FEM) system is proposed to address above challenges with Ni-EDTA used as the model contaminant. Electrolysis is confirmed to remarkably promote the activation performance of boron towards PMS to efficiently generate •OH which dominated Ni-EDTA decomplexation in the anode chamber. It is revealed that the acidification near the anode electrode improves the stability of boron by inhibiting passivation layer growth. Under optimal parameters (10 mM PMS, 0.5 g/L boron, initial pH = 2.3, current density = 68.87 A/m2), 91.8% of Ni-EDTA could be degraded in 40 min, with a kobs of 6.25 × 10−2 min−1. As the decomplexation proceeds, nickel ions are recovered in the cathode chamber with little interference from the concentration of co-existing cations. These findings provide a promising and sustainable strategy for simultaneous metal-organic complexes removal and metal resources recovery.