Mesocosm System Research Articles

Eutrophication promotes resource use efficiency and toxin production of Microcystis in a future climate warming scenario

Addressing the risks of cyanobacterial blooms and toxin production under ongoing and accelerating eutrophication and climate warming is crucial for both water ecosystem services and human health. Therefore, we here explored the interactive effects of eutrophication and warming on freshwater ecosystems, focusing on Microcystis and its cyanotoxin production. We employed a large-scale mesocosm system simulating future climate warming scenarios in concert with varying degrees of nutrient enrichment. We explored the full range of identified cyanobacterial toxins and cyanotoxin-producing genes under different experimental conditions and assessed the effects of both eutrophication and warming on both phytoplankton community structure (algal densities, community stability) and function (resource use efficiency, RUE). We show here that eutrophication increases the RUE of Microcystis and promotes an increase in toxin-producing genes, leading to a substantial increase in the dominance of Microcystis. This increase correlates with enhanced cyanotoxin production, a trend exacerbated under the influence of future climate warming, suggesting interactions between eutrophication and climate warming on Microcystis ecology and cyanotoxin dynamics. Hence, heatwaves and eutrophication lead the phytoplankton community to be dominated by a minority of algal species with higher toxic capacity. In a broader context, our study underscores the urgent need for holistic management strategies, addressing both nutrient control and climate mitigation, to effectively manage the escalating ecological risks associated with cyanobacterial dominance and toxin production.

An innovative soil mesocosm system for studying the effect of soil moisture and background NO on soil surface C and N trace gas fluxes

Nitric oxide (NO) is a key substance in atmospheric chemistry, influencing the formation and destruction of tropospheric ozone and the atmosphere's oxidizing capacity. It also affects the physiological functions of organisms. NO is produced, consumed, and emitted by soils, the effects of soil NO concentrations on microbial C and N cycling and associated trace gas fluxes remain largely unclear. This study describes a new automated 12-chamber soil mesocosm system that dynamically changes incoming airflow composition. It was used to investigate how varying NO concentrations affect soil microbial C and N cycling and associated trace gas fluxes under different moisture conditions (30% and 50% WFPS). Based on detection limits for NO, NO2, N2O, and CH4 fluxes of < 0.5 µg N or C m−2 h−1 and for CO2 fluxes of < 1.2 mg C m−2 h−1, we found that soil CO2, CH4, NO, NO2, and N2O were significantly affected by different soil moisture levels. After 17 days cumulative fluxes at 50% WFPS increased by 40, 400, and 500% for CO2, N2O, and CH4, respectively, when compared to 30% WFPS. However, cumulative fluxes for NO, and NO2, decreased by 70, and 40%, respectively, at 50% WFPS when compared to 30% WFPS. Different NO concentrations tended to decrease soil C and N fluxes by about 10–20%. However, with the observed variability among individual soil mesocosms and minor fluxes change. In conclusion, the developed system effectively investigates how and to what extent soil NO concentrations affect soil processes and potential plant–microbe interactions in the rhizosphere.

Dissolved organic matter (DOM) rather than warming and eutrophication directly affects partial pressure of CO2 (pCO2) in mesocosm systems

Environmental warming and eutrophication pose significant challenges to shallow lake systems, where dissolved organic matter (DOM) serves as a diverse and intricate mixture of organic macromolecules, playing a pivotal role in aquatic ecosystems. Despite its complexity, comprehending the interplay between environmental changes and DOM composition alterations and their subsequent impacts on aqueous CO2 partial pressure (pCO2) is essential for a better understanding of carbon cycling. Yet, our current understanding in this realm remains limited. To address this gap, mesocosm systems were established to investigate how elevated water temperature and eutrophication, alongside changes in DOM composition, influence pCO2 dynamics. Results indicate that while temperature and nutrient levels do not directly influence pCO2 fluctuations, they indirectly affect aqueous pCO2 through their modulation of DOM composition. Elevated temperature and nutrient concentrations notably enhance both the production and degradation of indigenous protein-like organic matter and increase the accumulation of humic-like organic compounds, with phosphorus released from sediment playing a particularly significant role. Furthermore, the degradation rate of protein-like organic matter significantly exceeds its accumulation rate. On the other hand, the impact of water eutrophication on DOM composition surpasses that of temporal temperature variations, with a 2∼4 °C temperature rise showing minimal effects on DOM composition. Notably, the degradation of protein-like organic matter markedly increases aqueous pCO2, while the rise in humic-like organic matter in water exerts minimal influence on pCO2 concentrations. A comprehensive understanding of carbon cycling processes under environmental changes will facilitate effective management of lake ecosystems and the advancement of carbon mitigation technologies.

Marine mesocosm system: A reliable tool for testing bioaccumulation and effects of seawater enrichment with dissolved iron in reef organisms

In 2015, a marine mesocosm facility was designed and implemented by the Coral Vivo Project in its research station (Porto Seguro, Bahia State, Brazil) to initially study the effects of global impacts, especially ocean warming and acidification, on coral reefs. However, local impacts, including seawater contamination with metal(loid)s, are considered as a major threat to coral reefs. Also, in 2015, the largest disaster involving a mining dam occurred in Brazil. Iron (Fe) mining tailings originated from the dam failure affected not only freshwater ecosystems (rivers, lakes and lagoons), but also adjacent beaches, mangroves, restingas, reefs and other marine systems. Seawater, sediments and biota were contaminated with metal(loid)s, especially Fe, arsenic (As), mercury (Hg) and manganese (Mn). Therefore, we aimed to adapt the marine mesocosm facility of the Coral Vivo Project to evaluate the bioaccumulation and biological impacts of increasing concentrations of dissolved Fe on a diversity of reef organisms. Results obtained indicate a great versatility and reliability of the marine mesocosm system for application in biological and ecological studies on the isolated effect of seawater dissolved Fe on reef organisms of different functional groups simultaneously.•Studies involving seawater enrichment with dissolved Fe can be performed using a marine mesocosm system.•The marine mesocosm is a reliable tool to study the isolated effects of metal(loid)s on reef organisms.

Structural and functional alterations under stress conditions by contamination: A multi-species study in a non-forced multi-compartmented mesocosm

Despite the existing connectivity and heterogeneity of aquatic habitats, the concept of interconnected landscapes has been frequently overlooked in ecotoxicological risk assessment studies. In this study, a novel mesocosm system, the HeMHAS (Heterogeneous Multi-Habitat Assay System), was constructed with the potential to assess structural and functional changes in a community resulting from exposure to contaminants, while also considering the complex ecological scenarios. Fish (Sparus aurata), shrimp (Palaemon varians) and three species of marine microalgae (Isochrysis galbana, Nannochloropsis gaditana and Tetraselmis chuii) were used as test organisms. Other species, such as Artemia sp. and macroalgae were also introduced into the system as environmental enrichment. All the species were distributed in five interconnected mesocosm compartments containing a copper gradient (0, 1, 10, 100 and 250 μg/L). The mobile fish avoided the copper contaminants from 1 μg/L (24 h-AC50: 4.88 μg/L), while the shrimp avoided from 50 μg/L (24 h-AC50: 136.58 μg/L). This finding suggests interspecies interactions influence habitat selection in contaminated environments, potentially jeopardizing population persistence. Among the non-motile organisms, the growth and chlorophyll content of the microalgae were concentration dependent. The growth of I. galbana was more sensitive (growth inhibition of 50 % at the highest concentration) in contrast to N. gaditana (30 % inhibition at the highest concentration) and T. chuii (25 % inhibition at the last two highest concentrations). In summary, the mesocosm HeMHAS showed how contamination-driven responses can be studied at landscape scales, enhancing the ecological relevance of ecotoxicological research.

Comparison of chemical contaminant measurements using CLAM, POCIS, and silicone band samplers in estuarine mesocosms.

Discrete water samples represent a snapshot of conditions at a particular moment in time and may not represent a true chemical exposure caused by changes in chemical input, tide, flow, and precipitation. Sampling technologies have been engineered to better estimate time-weighted concentrations. In this study, we consider the utility of three integrative sampling platforms: polar organic chemical integrative sampler (POCIS), silicone bands (SBs), and continuous, low-level aquatic monitoring (CLAM). This experiment used simulated southeastern salt marsh mesocosm systems to evaluate the response of passive (POCIS, SBs) and active sampling (CLAM) devices along with discrete sampling methodologies. Three systems were assigned to each passive sampler technology. Initially, all tanks were dosed at nominal (low) bifenthrin, pyrene, and triclosan concentrations of 0.02, 2.2, and 100 µg/L, respectively. After 28 days, the same treatment systems were dosed a second time (high) with bifenthrin, pyrene, and triclosan at 0.08, 8.8, and 200 µg/L, respectively. For passive samplers, estimated water concentrations were calculated using published or laboratory-derived sampling rate constants. Chemical residues measured from SBs resulted in high/low ratios of approximately 2x, approximately 3x, and 1x for bifenthrin, pyrene, and triclosan. A similar pattern was calculated using data from POCIS samples (~4x, ~3x, ~1x). Results from this study will help users of CLAM, POCIS, and SB data to better evaluate water concentrations from sampling events that are integrated across time. Integr Environ Assess Manag 2024;20:1384-1395. © 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Brownification increases the abundance of microorganisms related to carbon and nitrogen cycling in shallow lakes

Brownification in aquatic ecosystems under global change has attracted attention. The composition and quantity of dissolved organic matter transported from various land use types to lakes differ significantly, causing varying ecological effects of lake brownification by region. Bacterial communities make a significant contribution to the material cycle of ecosystems and are sensitive to environmental changes. In this study, a series of mesocosm systems were used to simulate forest lakes and urban lakes with different degrees of brownification, and a high-throughput amplicon sequencing technique was used to explore the changes in the composition, structure, and function of bacterial communities in shallow lakes undergoing brownification. Principal coordinate analysis (PCoA) and Jensen‒Shannon distance typing analysis both indicated significant differences in bacterial communities between forest lakes and urban lakes. The α diversity of bacterial communities in urban lakes increased with the degree of brownification. However, whether forest lakes or urban lakes, brownification increased the abundance of carbon cycling-related bacterial phyla (Proteobacteria, Poribacteria, and Chloroflexi) and nitrogen cycling-related bacterial genera (Microbacteriaceae, Limnohabitans, Comamonadaceae, Bacillus, and Rhizobiales_Incertae_Sedis). Additionally, the carbon and nitrogen cycling functions of bacterial communities in forest lakes are dominant, while those in urban lakes are dominated by functions related to light. Our study has preliminarily revealed that lake brownification promotes the growth of carbon and nitrogen cycling microorganisms, providing a new paradigm for understanding the response of lake ecosystems in different catchment areas to environmental changes and the carbon and nitrogen cycling processes in shallow lake ecosystems.

Comprehensive characterization of organics in oil sands process water in constructed mesocosms utilizing multiple analytical methods

This study aims to provide a thorough characterization of dissolved organics in oil sands process water (OSPW) in field-based aquatic mesocosms at both molecular and bulk measurement levels using multiple analytical methods. In a 3-year outdoor mesocosm experiment, the analysis of naphthenic acid (NA) species was conducted using ultra-performance liquid chromatography time-of-flight mass spectrometry (UPLC-TOFMS). The results revealed the removal of both total NAs (38% and 35%) and classical NAs (O2–NAs, 58% and 49%) in undiluted and half-diluted OSPW, respectively. The increased ratios of oxidized NAs (O3–O6 NAs) to classical NAs suggested a transformation trend. The results also indicated that O2–NAs with higher carbon number and lower double bond equivalent (DBE) were more easily degraded in the mesocosm systems. Biomimetic extraction using solid-phase microextraction (BE-SPME) measurement displayed 26% (undiluted OSPW) and 30% (half-diluted OSPW) decrease in total bioavailable organics over 3 years. Naphthenic acids fraction compounds (NAFCs) obtained by liquid-liquid extraction (LLE) were also determined using Fourier transform infrared spectroscopy (FTIR). Reduction in acute toxicity for undiluted (43%) and half-diluted (26%) OSPW was observed over 3 years, which are well correlated with the decreases of NAs and BE-SPME concentrations. Moreover, BE-SPME values were found to be linearly correlated with total NAs concentrations (r = 0.96) and NAFCs (r = 0.96). Additionally, the linear relationships of individual O2–O6 NA species and BE-SPME concentrations unveiled the changes in the relative abundances of O2–O6 NA species in total bioavailable organics over time in the mesocosms. The present study has provided comprehensive insights by integrating various analytical methods, contributing valuable information for assessing the effectiveness of aquatic mesocosm systems in studying the temporal changes of organics in OSPW.

A new incubation system to simultaneously measure N2 as well as N2O and CO2 fluxes from plant-soil mesocosms

AbstractThis study presents a novel plant-soil mesocosm system designed for cultivating plants over periods ranging from days to weeks while continuously measuring fluxes of N2, N2O and CO2. For proof of concept, we conducted a 33-day incubation experiment using six soil mesocosms, with three containing germinated wheat plants and three left plant-free. To validate the magnitude of N2 and N2O fluxes, we used 15N-enriched fertilizer and a 15N mass balance approach. The system inherent leakage rate was about 55 µg N m− 2 h− 1 for N2, while N2O leakage rates were below the detection limit (&lt; 1 µg N m− 2 h− 1). In our experiment, we found higher cumulative gaseous N2 + N2O losses in sown soil (0.34 ± 0.02 g N m− 2) as compared to bare soil (0.23 ± 0.01 g N m− 2). N2 fluxes accounted for approximately 94–96% of total gaseous N losses in both planted and unplanted mesocosms. N losses, as determined by the 15N mass balance approach, were found to be 1.7 ± 0.5 g N m− 2 for the sown soil and 1.7 ± 0.6 g N m− 2 for the bare soil, indicating an inconsistency between the two assessment methods. Soil respiration rates were also higher in sown mesocosms, with cumulative soil and aboveground biomass CO2 respiration reaching 4.8 ± 0.1 and 4.0 ± 0.1 g C m− 2 over the 33-day incubation period, in sown and bare soil, respectively. Overall, this study measured the effect of wheat growth on soil denitrification, highlighting the sensitivity and utility of this advanced incubation system for such studies.

Dynamics of Microcystis surface scum formation under different wind conditions: the role of hydrodynamic processes at the air-water interface.

Due to climate change, Microcystis blooms occur at increasing frequencies in aquatic ecosystems worldwide. Wind-generated turbulence is a crucial environmental stressor that can vertically disperse the Microcystis surface scum, reducing its light availability. Yet, the interactions of Microcystis scum with the wind-generated hydrodynamic processes, particularly those at the air-water interface, remain poorly understood. Here, we explore the response of Microcystis (including colony size and migration dynamics) to varying magnitudes and durations of intermittent wind disturbances in a mesocosm system. The flow velocities, size of Microcystis colonies, and the areal coverage of the water surface by scum were measured through video observations. Our results demonstrate that low wind speeds increase colony size by providing a stable condition where Microcystis forms a scum layer and aggregates into large colonies at the air-water interface. In contrast, wind disturbances disperse scum and generate turbulence, resulting in smaller colonies with higher magnitudes of wind disturbance. We observed that surface scum can form rapidly following a long period (6h) of high-magnitude (4.5m s-1) wind disturbance. Furthermore, our results indicate reduced water surface tension caused by the presence of Microcystis, which can decrease surface flow velocity and counteract wind-driven mixing. The reduced surface tension may also drive lateral convection at the water surface. These findings suggest that Microcystis reduces surface tension, likely by releasing surface-active materials, as an adaptive response to various wind conditions. This could result in an increased rate of surface scum re-formation under wind conditions and potentially facilitate the lateral expansion of scum patches during weak wind periods. This study reveals new insights into how Microcystis copes with different wind conditions and highlights the importance of the air-water interface for Microcystis scum dynamics.

Assessment of the potential of microbial consortium for the reclamation of mine tailings containing potentially toxic elements

Bioremediation using microorganisms is an emerging green technology for the remediation of potentially toxic elements (PTEs) in soils and sediments. However, such technology can differently impact PTEs dynamics (e.g., immobilization and mobilization), ultimately affecting the efficiency of the remediation programs. In this study, we aimed to assess different microbial remediation mechanisms triggered by a microbial consortium to bioremediate Fe-rich mining tailings. The tailings were incubated in a mesocosm system for 35 days with increasing colony-forming units (CFU) of a specific microbial consortium (Azospirillum sp., Pseudomonas sp., Saccharomyces sp., and Rhizobium sp.). At the end of the experiment, we determined the geochemical fractionation of Fe and PTEs in the solid phase to assess the effect of treatments on PTE’s bioavailability. Increasing the CFU resulted in higher Fe (15%) and Mn (37%) reductive dissolution compared to the control. As a result, the Fe and Mn concentrations in water increased by 9-fold. In addition, microbial consortium decreased the contents of Fe and Mn associated with oxides (-59% and −79%, respectively) and increased the more bioavailable solid fractions. The microbial consortium also efficiently decreased PTEs pseudo total contents in the mine tailings (Cr: −85%, Cd: −61%, Pb: −55%, and Cu: −49%). In addition, lower CFUs increased PTEs dissolved in the drainage water, indicating a potential for assisting other remediation strategies. Lower CFU also induced high Cr biomineralization (94%). In conclusion, our work provides novel evidence of a microbial consortium for remediating Fe mine tailings through different strategies (biodissolution and biomineralization). In view of the effects of the microbial consortium over Fe and Mn oxyhydroxide dissolution rates, further research should test it on microbially assisted phytoremediation protocols.

Technical note: An autonomous flow-through salinity and temperature perturbation mesocosm system for multi-stressor experiments

Abstract. The rapid environmental changes in aquatic systems as a result of anthropogenic forcings are creating a multitude of challenging conditions for organisms and communities. The need to better understand the interaction of environmental stressors now, and in the future, is fundamental to determining the response of ecosystems to these perturbations. This work describes an automated ex situ mesocosm perturbation system that can manipulate several variables of aquatic media in a controlled setting. This perturbation system was deployed in Kongsfjorden (Svalbard); within this system, ambient water from the fjord was heated and mixed with freshwater in a multifactorial design to investigate the response of mixed-kelp communities in mesocosms to projected future Arctic conditions. The system employed an automated dynamic offset scenario in which a nominal temperature increase was programmed as a set value above real-time ambient conditions in order to simulate future warming. A freshening component was applied in a similar manner: a decrease in salinity was coupled to track the temperature offset based on a temperature–salinity relationship in the fjord. The system functioned as an automated mixing manifold that adjusted flow rates of warmed and chilled ambient seawater, with unmanipulated ambient seawater and freshwater delivered as a single source of mixed media to individual mesocosms. These conditions were maintained via continuously measured temperature and salinity in 12 mesocosms (1 control and 3 treatments, all in triplicate) for 54 d. System regulation was robust, as median deviations from nominal conditions were &lt; 0.15 for both temperature (∘C) and salinity across the three replicates per treatment. Regulation further improved during a second deployment that mimicked three marine heat wave scenarios in which a dynamic temperature regulation held median deviations to &lt; 0.036 ∘C from the nominal value for all treatment conditions and replicates. This perturbation system has the potential to be implemented across a wide range of conditions to test single or multi-stressor drivers (e.g., increased temperature, freshening, and high CO2) while maintaining natural variability. The automated and independent control for each experimental unit (if desired) provides a large breadth of versatility with respect to experimental design.

An automated modular heating solution for experimental flow‐through stream mesocosm systems

AbstractWater temperature is a key environmental variable in stream ecosystems determining species distribution ranges, community composition, and ecological processes. In addition to global warming, direct anthropogenic impacts, for example through the influx of power plant cooling water or due to sun exposure after the removal of riparian vegetation, result in elevated water temperatures. However, temperature effects in stream ecosystems have mostly been tested in recirculating experimental systems, which can neither capture diurnal and seasonal variability in other environmental variables nor allow for entrainment of stream organisms. In contrast, open flow‐through systems, which are constantly supplied with stream water, offer a more realistic setting for stream ecological experiments, yet are difficult to implement. Here, we outline a heating module for the purpose of differential temperature regulation in a flow‐through mesocosm system by automatic control of warm water supply. We validated the functionality of the module in indoor trials as well as in an outdoor ExStream experimental mesocosm system. Furthermore, we tested the implications of different warm water temperatures for the survival of invertebrates drifting through the heating module to derive recommendations for the maximum warm water temperature for mixing with the natural water inflow. The module allows for controlled open flow‐through experiments in the field and the key components are flexible and scalable. Therefore, the module can be easily integrated into existing experimental flow‐through setups.

Effects of flow reduction and artificial light at night (ALAN) on litter decomposition and invertebrate communities in streams: A flume experiment

River ecosystems are heavily impacted by multiple stressors, where effects can cascade downstream of point sources. However, a spatial approach to assess the effects of multiple stressors is missing. We assessed the local and downstream effects on litter decomposition, and associated invertebrate communities of two stressors: flow reduction and artificial light at night (ALAN). We used an 18-flow-through mesocosm system consisting of two tributaries, where we applied the stressors, merging in a downstream section. We assessed the changes in decomposition rate and invertebrate community structure in leaf bags. We found no effect of ALAN or its interaction with flow reduction on the litter decomposition or the invertebrate community in the tributaries. Flow reduction alone led to a 14.8 % reduction in decomposition rate in the tributaries. We recorded no effect of flow reduction on the macroinvertebrates community composition in the litter bags. We also observed no effects of the spatial arrangement of the stressors on the litter decomposition and macroinvertebrate community structure downstream. Overall, our results suggest the impact of stressors on litter decomposition and macroinvertebrate communities remained local in our experiment. Our work thus calls for further studies to identify the mechanisms and the conditions under which spatial effects dominate over local processes.

Fate and toxicity of 2,4-D and fipronil in mesocosm systems

2,4-D and fipronil are among Brazil's most used pesticides. The presence of these substances in surface waters is a concern for the aquatic ecosystem health. Thus, understanding the behavior of these substances under environmentally relevant conditions is essential for an effective risk assessment. This study aimed to determine the degradation profiles of 2,4-D and fipronil after controlled application in aquatic mesocosm systems under influencing factors such as environmental aspects and vinasse application, evaluate pesticide dissipation at the water-sediment interface, and perform an environmental risk assessment in water and sediment compartments. Mesocosm systems were divided into six different treatments, namely: control (C), vinasse application (V), 2,4-D application (D), fipronil application (F), mixture of 2,4-D and fipronil application (M), and mixture of 2,4-D and fipronil with vinasse application (MV). Pesticide application was performed according to typical Brazilian sugarcane management procedures, and the experimental systems were monitored for 150 days. Pesticide dissipation kinetics was modeled using first-order reaction models. The estimated half-life times of 2,4-D were 18.2 days for individual application, 50.2 days for combined application, and 9.6 days for combined application with vinasse. For fipronil, the respective half-life times were 11.7, 13.8, and 24.5 days. The dynamics of pesticides in surface waters resulted in the deposition of these compounds in the sediment. Also, fipronil transformation products fipronil-sulfide and fipronil-sulfone were quantified in water 21 days after pesticide application. Finally, performed risk assessments showed significant potential risk to environmental health, with RQ values for 2,4-D up to 1359 in freshwater and 98 in sediment, and RQ values for fipronil up to 22,078 in freshwater and 2582 in sediment.

Larviculture of Brycon amazonicus under Different Food and Farming Systems

Freshwater fish larviculture techniques still have deficiencies in cultivation and feeding. In this study, we evaluated experimentally different cultivation and feeding systems in the Brycon amazonicus (matrinxã) larviculture. Seven treatments with different live foods were used: T1 = a semi-intensive mesocosm system with green water; T2 = a clear water system containing Artemia sp. as food; T3 = a clear water system containing Dendrocephalus brasiliensis as food; T4 = a clear water system containing a combination of Artemia sp. and D. brasiliensis as food (a proportion of 1:1); T5, T6 and T7 were the same as T2, T3 and T4, respectively, but with a swimming exercise system. During the experiment, the water quality parameters were measured and maintained suitably for the cultures. The highest values of final weight (42.97 ± 2.58 mg) and specific growth rate (31.77 ± 0.60%) were observed in T5 (p &lt; 0.05). Regarding the nutritional composition, the larvae of B. amazonicus that were fed nauplii of D. brasiliensis had a better profile of amino acids and essential fatty acids than those fed other live foods. Therefore, nauplii of D. brasiliensis can be used as an adequately nutritional food for larvae of B. amazonicus.

Microbial Community Colonization Process Unveiled through eDNA-PFU Technology in Mesocosm Ecosystems.

Microbial communities are essential components of aquatic ecosystems and are widely employed for the detection, protection, and restoration of water ecosystems. The polyurethane foam unit (PFU) method, an effective and widely used environmental monitoring technique, has been improved with the eDNA-PFU method, offering efficiency, rapidity, and standardization advantages. This research aimed to explore the colonization process of microbial communities within PFUs using eDNA-PFU technology. To achieve this, we conducted ten-day monitoring and sequencing of microbial communities within PFUs in a stable and controlled artificial aquatic ecosystem, comparing them with water environmental samples (eDNA samples). Results showed 1065 genera in eDNA-PFU and 1059 in eDNA, with eDNA-PFU detecting 99.95% of eDNA-identified species. Additionally, the diversity indices of bacteria and eukaryotes in both methods showed similar trends over time in the colonization process; however, relative abundance differed. We further analyzed the colonization dynamics of microbes in eDNA-PFU and identified four clusters with varying colonization speeds. Notably, we found differences in colonization rates between bacteria and eukaryotes. Furthermore, the Molecular Ecological Networks (MEN) showed that the network in eDNA-PFU was more modular, forming a unique microbial community differentiated from the aquatic environment. In conclusion, this study, using eDNA-PFU, comprehensively explored microbial colonization and interrelationships in a controlled mesocosm system, providing foundational data and reference standards for its application in aquatic ecosystem monitoring and beyond.

Anticipated impacts of climate change on the structure and function of phytobenthos in freshwater lakes

Climate change threatens surface waters worldwide, especially shallow lakes where one of the expected consequences is a sharp increase in their water temperatures. Phytobenthos is an essential, but still less studied component of aquatic ecosystems, and it would be important to learn more about how global warming will affect this community in shallow lakes. In this research, the effects of different climate change scenarios (SSP2-4.5 and SSP5-8.5, as intermediate and high emission scenarios) on the structure and function of the entire phytobenthos community using species- and trait-based approaches were experimentally investigated in an outdoor mesocosm system. Our results show that the forecasted 3 °C increase in temperature will already exert significant impacts on the benthic algal community by (1) altering its species and (2) trait composition (smaller cell size, lower abundance of colonial and higher of filamentous forms); (3) decreasing Shannon diversity; and (4) enhancing the variability of the community. Higher increase in the temperature (+5 °C) will imply more drastic alterations in freshwater phytobenthos by (1) inducing very high variability in species composition and compositional changes even in phylum level (towards higher abundance of Cyanobacteria and Chlorophyta at the expense of Bacillariophyta); (2) continuing shift in trait composition (benefits for smaller cell volume, filamentous life-forms, non-motile and weakly attached taxa); (3) further reducing the functional diversity; (4) increasing biofilm thickness (1.4 μm/°C) and (5) decreasing maximum quantum yield of photosystem II. In conclusion, already the intermediate emission scenario will predictably induce high risk in biodiversity issues, the high emission scenario will imply drastic impacts on the benthic algae endangering even the function of the ecosystem.

Crop residue retention increases greenhouse gas emissions but reduces chemical fertilizer requirement in a vegetable-rice rotation

Retaining crop residues on site after harvesting can maintain soil fertility, reduce fertilizer requirements and restore soil organic carbon on intensively cultivated land. However, how crop residue retention and reduced chemical fertilizer application affect greenhouse gas emissions and crop yield in vegetable-rice rotations is poorly understood. We studied the effect of chemical fertilizer application alone (control, without straw retention), straw retention with 100 % nitrogen fertilizer application (STF) or with three levels of reduced chemical fertilizer application (SFR1, SFR2 and SFR3) in a vegetable-rice rotation in a mesocosm system. In the vegetable season, crop yield was maintained but the agronomic efficiency (AE) was higher in SFR1, SFR2 and SFR3 as compared to STF and the control. In the rice season under flooded condition, the methanogens were higher in SFR1, SFR2 and SFR3 compared to the control, but not different between STF and SFR1. The STF showed higher methane and nitrous oxide emissions, but carbon dioxide emissions and AE remained unaffected compared to the control in the vegetable-rice rotation. The SFR2 and SFR3 treatments maintained crop yields, increased AE, and decreased N2O emissions as compared with STF, but the CH4 emissions were 29.8 % lower in SFR2 than SFR3 in the vegetable-rice rotation. We concluded that straw retention with reduced chemical fertilizer application can maintain crop yield in a vegetable-rice rotation but has the potential to increase CH4 emissions in the rice cultivation season.

Individual and combined effects of herbicide prometryn and nitrate enrichment at environmentally relevant concentrations on photosynthesis, oxidative stress, and endosymbiont community diversity of coral Acropora hyacinthus

Nitrogen pollution and pesticides such as photosystem II (PSII) inhibitor herbicides have several detrimental impacts on coral reefs, including breakdown of the symbiosis between host corals and photosynthetic symbionts. Although nitrogen and PSII herbicide pollution separately cause coral bleaching, the combined effects of these stressors at environmentally relevant concentrations on corals have not been assessed. Here, we report the combined effects of nitrate enrichment and PSII herbicide (prometryn) exposure on photosynthesis, oxidative status and endosymbiont community diversity of the reef-building coral Acropora hyacinthus. Coral fragments were exposed in a mesocosm system to nitrate enrichment (9 μmol/L) and two prometryn concentrations (1 and 5 μg/L). The results showed that sustained prometryn exposure in combination with nitrate enrichment stress had significant detrimental impacts on photosynthetic apparatus [the maximum quantum efficiency of photosystem II (Fv/Fm), nonphotochemical quenching (NPQ) and oxidative status in the short term. Nevertheless, the adaptive mechanism of corals allowed the normal physiological state to be recovered following 1 μg/L prometryn and 9 μmol/L nitrate enrichment individual exposure. Moreover, exposure for 9 days was insufficient to trigger a shift in Symbiodiniaceae community. Most importantly, the negative impact of exposure to the combined environmental concentrations of 1 μg/L prometryn and 9 μmol/L nitrate enrichment was found to be significantly greater on the Fv/Fm, quantum yield of non-regulated energy dissipation [Y(NO)], NPQ, and oxidative status of corals compared to the impact of individual stressors. Our results show that interactions between prometryn stress and nitrate enrichment have a synergistic impact on the photosynthetic and oxidative stress responses of corals. This study provides valuable insights into combined effects of nitrate enrichment and PSII herbicides pollution for coral's physiology. Environmental concentrations of PSII herbicides may be more harmful to photosystems and antioxidant systems of corals under nitrate enrichment stress. Thus, future research and management of seawater quality stressors should consider combined impacts on corals rather than just the impacts of individual stressors alone.